Wall clock time and date at job start Tue Mar 31 2020 06:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47016 * 2 1 4 4 C 1.37095 * 119.99811 * 277.45043 * 3 2 1 5 5 H 1.07998 * 119.99685 * 177.34494 * 4 3 2 6 6 C 1.38949 * 120.00400 * 357.34858 * 4 3 2 7 7 N 1.31417 * 119.99650 * 9.72916 * 6 4 3 8 8 Si 1.86796 * 120.00196 * 189.73688 * 6 4 3 9 9 H 1.48505 * 109.47112 * 59.99630 * 8 6 4 10 10 H 1.48501 * 109.47269 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47278 * 299.99733 * 8 6 4 12 12 C 1.34778 * 120.00054 * 97.44628 * 3 2 1 13 13 O 1.21294 * 120.00163 * 187.79708 * 12 3 2 14 14 C 1.50696 * 119.99996 * 7.80090 * 12 3 2 15 15 C 1.53004 * 109.54494 * 302.79734 * 14 12 3 16 16 C 1.50698 * 109.46753 * 303.67417 * 15 14 12 17 17 O 1.20825 * 120.00526 * 5.64803 * 16 15 14 18 18 O 1.34228 * 119.99989 * 185.64370 * 16 15 14 19 19 C 1.53181 * 109.54584 * 182.61818 * 14 12 3 20 20 C 1.53278 * 109.06213 * 297.02985 * 19 14 12 21 21 O 1.42907 * 109.46237 * 302.44386 * 20 19 14 22 22 C 1.42905 * 114.09798 * 61.15681 * 21 20 19 23 23 C 1.53092 * 109.41641 * 298.84575 * 22 21 20 24 24 H 1.09005 * 109.47252 * 64.95513 * 1 2 3 25 25 H 1.09006 * 109.46928 * 184.95362 * 1 2 3 26 26 H 1.09001 * 109.47654 * 304.95559 * 1 2 3 27 27 H 1.08998 * 109.47396 * 239.99716 * 2 1 3 28 28 H 1.09001 * 109.46765 * 119.99543 * 2 1 3 29 29 H 0.96999 * 119.99573 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47049 * 63.67201 * 15 14 12 31 31 H 1.08995 * 109.47257 * 183.67721 * 15 14 12 32 32 H 0.96701 * 117.00600 * 180.02562 * 18 16 15 33 33 H 1.08995 * 109.51894 * 57.01816 * 19 14 12 34 34 H 1.09000 * 109.52398 * 177.20908 * 19 14 12 35 35 H 1.08999 * 109.46001 * 182.44498 * 20 19 14 36 36 H 1.09002 * 109.46700 * 62.44709 * 20 19 14 37 37 H 1.08995 * 109.48099 * 178.86016 * 22 21 20 38 38 H 1.08997 * 109.48539 * 58.83191 * 22 21 20 39 39 H 1.09001 * 109.51915 * 297.70399 * 23 22 21 40 40 H 1.08996 * 109.57617 * 177.54614 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1016 2.0788 -1.1773 5 1 2.4207 3.1106 -1.1721 6 6 1.7754 1.4585 -2.3771 7 7 1.2077 0.2733 -2.3708 8 14 2.1441 2.3090 -3.9988 9 1 3.6045 2.5555 -4.1077 10 1 1.7033 1.4443 -5.1227 11 1 1.4182 3.6032 -4.0552 12 6 2.3856 1.9662 1.1574 13 8 2.6544 3.1487 1.1807 14 6 2.4622 1.1510 2.4225 15 6 1.1054 0.4978 2.6935 16 6 0.0401 1.5616 2.7593 17 8 0.3163 2.7100 2.5048 18 8 -1.2159 1.2334 3.1006 19 6 2.8365 2.0609 3.5966 20 6 4.2311 2.6475 3.3505 21 8 5.1723 1.5849 3.1854 22 6 4.8975 0.7295 2.0742 23 6 3.5319 0.0654 2.2685 24 1 -0.3634 0.4351 -0.9311 25 1 -0.3633 -1.0239 0.0887 26 1 -0.3634 0.5888 0.8422 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.9797 -0.1596 -3.2084 30 1 0.8718 -0.2012 1.8904 31 1 1.1431 -0.0378 3.6420 32 1 -1.8648 1.9498 3.1289 33 1 2.1087 2.8681 3.6781 34 1 2.8434 1.4807 4.5193 35 1 4.5221 3.2619 4.2025 36 1 4.2134 3.2607 2.4494 37 1 5.6686 -0.0379 2.0068 38 1 4.8885 1.3173 1.1563 39 1 3.5528 -0.5550 3.1645 40 1 3.3003 -0.5539 1.4020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589718780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:32 Heat of formation + Delta-G solvation = -127.127640 kcal Electronic energy + Delta-G solvation = -25713.976085 eV Core-core repulsion = 22109.932972 eV Total energy + Delta-G solvation = -3604.043113 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97940 -39.17296 -37.50945 -35.78311 -35.21016 -34.27956 -31.61621 -30.56271 -29.87443 -28.60748 -25.51112 -23.75404 -23.40005 -22.24608 -21.00820 -20.83858 -18.32744 -17.63497 -16.88152 -16.52193 -15.85566 -15.66367 -15.40024 -15.17654 -14.54855 -14.35017 -14.13026 -13.78705 -13.30927 -13.02179 -12.86878 -12.47874 -12.19007 -11.91076 -11.82890 -11.55334 -11.22723 -11.18009 -11.14363 -11.02836 -10.73370 -10.64635 -10.36944 -10.30048 -10.17053 -9.97102 -9.87002 -9.57427 -9.05351 -8.83743 -8.10814 -7.74207 -6.14350 -3.77047 2.66634 3.18427 3.24236 3.28804 3.36297 3.89848 4.11694 4.33870 4.75418 4.96672 4.99215 5.15642 5.29386 5.39527 5.55521 5.67618 5.68383 5.74328 5.81632 5.89968 6.06943 6.12558 6.18354 6.20461 6.32552 6.43038 6.52228 6.54414 6.62984 6.67529 6.78333 6.90531 7.39163 7.60624 7.66955 7.72635 8.11545 8.31047 8.59214 9.23734 9.50102 10.04546 10.70476 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016241 B = 0.008409 C = 0.006761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.644527 B = 3328.852039 C = 4140.382806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.085 3.915 3 N -0.449 5.449 4 C -0.284 4.284 5 H 0.101 0.899 6 C 0.020 3.980 7 N -0.886 5.886 8 Si 0.929 3.071 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.470 3.530 13 O -0.570 6.570 14 C -0.060 4.060 15 C -0.135 4.135 16 C 0.471 3.529 17 O -0.481 6.481 18 O -0.526 6.526 19 C -0.129 4.129 20 C 0.052 3.948 21 O -0.392 6.392 22 C 0.064 3.936 23 C -0.151 4.151 24 H 0.087 0.913 25 H 0.038 0.962 26 H 0.019 0.981 27 H 0.135 0.865 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.141 0.859 31 H 0.098 0.902 32 H 0.403 0.597 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 -5.008 8.642 10.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.037 4.037 3 N -0.168 5.168 4 C -0.411 4.411 5 H 0.119 0.881 6 C -0.179 4.179 7 N -0.530 5.530 8 Si 0.756 3.244 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.202 1.202 12 C 0.258 3.742 13 O -0.453 6.453 14 C -0.063 4.063 15 C -0.172 4.172 16 C 0.312 3.688 17 O -0.366 6.366 18 O -0.338 6.338 19 C -0.167 4.167 20 C -0.024 4.024 21 O -0.311 6.311 22 C -0.013 4.013 23 C -0.188 4.188 24 H 0.106 0.894 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.152 0.848 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.159 0.841 31 H 0.117 0.883 32 H 0.261 0.739 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.081 -4.547 8.496 9.636 hybrid contribution -0.929 0.673 -0.904 1.461 sum -0.848 -3.874 7.591 8.565 Atomic orbital electron populations 1.22335 0.97311 0.98954 1.02075 1.22603 0.94258 0.84509 1.02350 1.43701 1.55806 1.11869 1.05466 1.19754 1.41264 0.97476 0.82641 0.88118 1.25184 0.96857 0.96493 0.99392 1.69934 1.41583 1.15066 1.26388 0.85946 0.78933 0.78781 0.80746 1.20093 1.21025 1.20186 1.19330 0.83792 0.87618 0.83505 1.90429 1.54555 1.15510 1.84855 1.20566 0.92912 0.96069 0.96795 1.22317 0.90879 0.97319 1.06652 1.23333 0.82326 0.90099 0.73050 1.90845 1.81141 1.21500 1.43127 1.84521 1.21041 1.45859 1.82399 1.22090 0.99292 0.99815 0.95460 1.22871 0.87210 0.89228 1.03132 1.87795 1.51127 1.42574 1.49616 1.22479 0.95537 0.93349 0.89907 1.22468 0.95264 0.97605 1.03491 0.89442 0.94284 0.96183 0.84802 0.93886 0.92564 0.84147 0.88330 0.73876 0.89352 0.92264 0.90112 0.89522 0.89212 0.92427 0.90842 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.43 37.16 0.31 -2.75 16 2 C 0.09 1.81 4.24 -4.04 -0.02 1.79 16 3 N -0.45 -10.98 2.64 -114.81 -0.30 -11.28 16 4 C -0.28 -7.69 9.51 -14.93 -0.14 -7.83 16 5 H 0.10 2.93 7.20 -52.49 -0.38 2.55 16 6 C 0.02 0.50 5.37 -17.47 -0.09 0.41 16 7 N -0.89 -21.78 7.53 55.50 0.42 -21.36 16 8 Si 0.93 20.59 29.56 -169.99 -5.03 15.56 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 C 0.47 11.08 3.20 -10.99 -0.04 11.04 16 13 O -0.57 -15.48 12.79 -10.54 -0.13 -15.62 16 14 C -0.06 -1.10 0.25 -155.47 -0.04 -1.14 16 15 C -0.13 -2.19 4.20 -27.88 -0.12 -2.31 16 16 C 0.47 8.44 5.57 36.00 0.20 8.64 16 17 O -0.48 -10.59 13.04 -24.46 -0.32 -10.91 16 18 O -0.53 -7.54 13.27 -39.25 -0.52 -8.06 16 19 C -0.13 -2.30 4.30 -26.49 -0.11 -2.41 16 20 C 0.05 0.95 6.56 37.30 0.24 1.19 16 21 O -0.39 -7.07 10.77 -35.23 -0.38 -7.45 16 22 C 0.06 1.09 6.62 37.20 0.25 1.34 16 23 C -0.15 -2.41 4.63 -26.59 -0.12 -2.53 16 24 H 0.09 2.08 6.39 -51.93 -0.33 1.75 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.02 0.40 4.38 -51.93 -0.23 0.17 16 27 H 0.14 3.10 5.44 -51.98 -0.28 2.82 16 28 H 0.04 0.78 2.66 -51.93 -0.14 0.64 16 29 H 0.26 6.24 8.31 -40.82 -0.34 5.90 16 30 H 0.14 2.30 2.94 -51.93 -0.15 2.15 16 31 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.40 4.20 9.10 45.56 0.41 4.61 16 33 H 0.09 1.75 6.06 -51.93 -0.31 1.44 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.87 5.71 -51.93 -0.30 1.58 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.14 7.38 -51.93 -0.38 0.76 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 1.46 5.27 -51.93 -0.27 1.18 16 LS Contribution 293.50 15.07 4.42 4.42 Total: -1.00 -31.64 293.50 -5.55 -37.19 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -4.04 Total: 12.06 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 0.32 Total: 5.44 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.12 Total: -32.64 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.35 Total: -42.04 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.64 -5.55 -37.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589718780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.934 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds