Wall clock time and date at job start Tue Mar 31 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47016 * 2 1 4 4 C 1.37095 * 119.99811 * 277.45043 * 3 2 1 5 5 H 1.07998 * 119.99685 * 177.34494 * 4 3 2 6 6 C 1.38949 * 120.00400 * 357.34858 * 4 3 2 7 7 N 1.31417 * 119.99650 * 9.72916 * 6 4 3 8 8 Si 1.86796 * 120.00196 * 189.73688 * 6 4 3 9 9 H 1.48505 * 109.47112 * 59.99630 * 8 6 4 10 10 H 1.48501 * 109.47269 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47278 * 299.99733 * 8 6 4 12 12 C 1.34778 * 120.00054 * 97.44628 * 3 2 1 13 13 O 1.21294 * 120.00163 * 187.79708 * 12 3 2 14 14 C 1.50696 * 119.99996 * 7.80090 * 12 3 2 15 15 C 1.53004 * 109.54494 * 302.79734 * 14 12 3 16 16 C 1.50698 * 109.46753 * 303.67417 * 15 14 12 17 17 O 1.20825 * 120.00526 * 5.64803 * 16 15 14 18 18 O 1.34228 * 119.99989 * 185.64370 * 16 15 14 19 19 C 1.53181 * 109.54584 * 182.61818 * 14 12 3 20 20 C 1.53278 * 109.06213 * 297.02985 * 19 14 12 21 21 O 1.42907 * 109.46237 * 302.44386 * 20 19 14 22 22 C 1.42905 * 114.09798 * 61.15681 * 21 20 19 23 23 C 1.53092 * 109.41641 * 298.84575 * 22 21 20 24 24 H 1.09005 * 109.47252 * 64.95513 * 1 2 3 25 25 H 1.09006 * 109.46928 * 184.95362 * 1 2 3 26 26 H 1.09001 * 109.47654 * 304.95559 * 1 2 3 27 27 H 1.08998 * 109.47396 * 239.99716 * 2 1 3 28 28 H 1.09001 * 109.46765 * 119.99543 * 2 1 3 29 29 H 0.96999 * 119.99573 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47049 * 63.67201 * 15 14 12 31 31 H 1.08995 * 109.47257 * 183.67721 * 15 14 12 32 32 H 0.96701 * 117.00600 * 180.02562 * 18 16 15 33 33 H 1.08995 * 109.51894 * 57.01816 * 19 14 12 34 34 H 1.09000 * 109.52398 * 177.20908 * 19 14 12 35 35 H 1.08999 * 109.46001 * 182.44498 * 20 19 14 36 36 H 1.09002 * 109.46700 * 62.44709 * 20 19 14 37 37 H 1.08995 * 109.48099 * 178.86016 * 22 21 20 38 38 H 1.08997 * 109.48539 * 58.83191 * 22 21 20 39 39 H 1.09001 * 109.51915 * 297.70399 * 23 22 21 40 40 H 1.08996 * 109.57617 * 177.54614 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1016 2.0788 -1.1773 5 1 2.4207 3.1106 -1.1721 6 6 1.7754 1.4585 -2.3771 7 7 1.2077 0.2733 -2.3708 8 14 2.1441 2.3090 -3.9988 9 1 3.6045 2.5555 -4.1077 10 1 1.7033 1.4443 -5.1227 11 1 1.4182 3.6032 -4.0552 12 6 2.3856 1.9662 1.1574 13 8 2.6544 3.1487 1.1807 14 6 2.4622 1.1510 2.4225 15 6 1.1054 0.4978 2.6935 16 6 0.0401 1.5616 2.7593 17 8 0.3163 2.7100 2.5048 18 8 -1.2159 1.2334 3.1006 19 6 2.8365 2.0609 3.5966 20 6 4.2311 2.6475 3.3505 21 8 5.1723 1.5849 3.1854 22 6 4.8975 0.7295 2.0742 23 6 3.5319 0.0654 2.2685 24 1 -0.3634 0.4351 -0.9311 25 1 -0.3633 -1.0239 0.0887 26 1 -0.3634 0.5888 0.8422 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.9797 -0.1596 -3.2084 30 1 0.8718 -0.2012 1.8904 31 1 1.1431 -0.0378 3.6420 32 1 -1.8648 1.9498 3.1289 33 1 2.1087 2.8681 3.6781 34 1 2.8434 1.4807 4.5193 35 1 4.5221 3.2619 4.2025 36 1 4.2134 3.2607 2.4494 37 1 5.6686 -0.0379 2.0068 38 1 4.8885 1.3173 1.1563 39 1 3.5528 -0.5550 3.1645 40 1 3.3003 -0.5539 1.4020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589718780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:31 Heat of formation + Delta-G solvation = -150.006552 kcal Electronic energy + Delta-G solvation = -25714.968189 eV Core-core repulsion = 22109.932972 eV Total energy + Delta-G solvation = -3605.035217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.47125 -40.59283 -39.10065 -37.19630 -36.98323 -35.80253 -33.46289 -31.94917 -31.56065 -30.02881 -27.34245 -25.26847 -24.81711 -23.89164 -22.56444 -22.21378 -19.97172 -18.98065 -18.76290 -17.99076 -17.30113 -17.05676 -16.93043 -16.76203 -16.09224 -15.95683 -15.81358 -15.41315 -14.94159 -14.54229 -14.45492 -13.91243 -13.67791 -13.42252 -13.26061 -13.10652 -12.95930 -12.81829 -12.65597 -12.51868 -12.38307 -12.17429 -12.06754 -11.98000 -11.77026 -11.62320 -11.33054 -11.10803 -10.70237 -10.49309 -9.89709 -9.62232 -8.06831 -5.77273 1.30851 1.37159 1.39850 1.48472 2.13252 2.17592 2.28806 2.96867 3.12179 3.13888 3.60112 3.64642 3.84924 4.04741 4.14899 4.36874 4.39541 4.42251 4.45338 4.51542 4.67886 4.74529 4.79867 4.85956 4.91776 4.93017 5.00946 5.07316 5.16261 5.19005 5.28568 5.45773 5.69834 5.77306 5.91930 6.19375 6.26446 6.68498 7.06411 7.30671 7.65815 8.21967 8.72865 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016241 B = 0.008409 C = 0.006761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.644527 B = 3328.852039 C = 4140.382806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.087 3.913 3 N -0.461 5.461 4 C -0.326 4.326 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.879 5.879 8 Si 0.978 3.022 9 H -0.277 1.277 10 H -0.266 1.266 11 H -0.286 1.286 12 C 0.464 3.536 13 O -0.620 6.620 14 C -0.058 4.058 15 C -0.134 4.134 16 C 0.471 3.529 17 O -0.533 6.533 18 O -0.512 6.512 19 C -0.124 4.124 20 C 0.053 3.947 21 O -0.390 6.390 22 C 0.060 3.940 23 C -0.145 4.145 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.022 0.978 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.268 0.732 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.421 0.579 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.042 0.958 37 H 0.125 0.875 38 H 0.014 0.986 39 H 0.119 0.881 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -8.055 10.257 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.035 4.035 3 N -0.181 5.181 4 C -0.455 4.455 5 H 0.079 0.921 6 C -0.201 4.201 7 N -0.521 5.521 8 Si 0.804 3.196 9 H -0.203 1.203 10 H -0.190 1.190 11 H -0.212 1.212 12 C 0.254 3.746 13 O -0.506 6.506 14 C -0.062 4.062 15 C -0.171 4.171 16 C 0.314 3.686 17 O -0.422 6.422 18 O -0.325 6.325 19 C -0.162 4.162 20 C -0.024 4.024 21 O -0.310 6.310 22 C -0.017 4.017 23 C -0.182 4.182 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.041 0.959 27 H 0.133 0.867 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.160 0.840 31 H 0.168 0.832 32 H 0.281 0.719 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.060 0.940 37 H 0.143 0.857 38 H 0.032 0.968 39 H 0.138 0.862 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.295 -7.654 10.115 12.688 hybrid contribution -0.865 1.653 -1.404 2.335 sum -1.160 -6.002 8.711 10.642 Atomic orbital electron populations 1.22215 0.96845 1.00627 1.00186 1.22636 0.94594 0.82897 1.03354 1.43878 1.56257 1.12900 1.05024 1.19511 1.44225 0.96745 0.84982 0.92081 1.25693 0.96165 0.97226 1.01036 1.70055 1.40070 1.14842 1.27095 0.85225 0.78363 0.77800 0.78225 1.20314 1.19048 1.21242 1.20308 0.81898 0.87571 0.84853 1.90402 1.56145 1.18158 1.85938 1.20577 0.95425 0.96368 0.93822 1.22385 0.88717 0.96637 1.09324 1.23725 0.83400 0.89667 0.71777 1.90860 1.82070 1.23720 1.45525 1.84470 1.20211 1.46435 1.81421 1.22059 0.97769 0.99532 0.96822 1.22773 0.88304 0.89335 1.01975 1.87795 1.51165 1.42394 1.49596 1.22609 0.97814 0.93375 0.87886 1.22500 0.93162 0.96881 1.05700 0.93152 0.90976 0.95921 0.86736 0.89958 0.92115 0.83974 0.83211 0.71886 0.91839 0.88230 0.87803 0.94015 0.85730 0.96770 0.86235 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 8.43 71.98 0.61 -4.98 16 2 C 0.09 3.58 4.24 86.38 0.37 3.95 16 3 N -0.46 -23.15 2.64 -635.54 -1.68 -24.82 16 4 C -0.33 -18.63 9.51 84.04 0.80 -17.83 16 5 H 0.06 3.87 7.20 -2.91 -0.02 3.85 16 6 C 0.00 -0.08 5.37 84.93 0.46 0.37 16 7 N -0.88 -43.13 7.53 21.66 0.16 -42.96 16 8 Si 0.98 43.09 29.56 68.60 2.03 45.11 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 C 0.46 22.47 3.20 87.66 0.28 22.75 16 13 O -0.62 -35.96 12.79 12.31 0.16 -35.80 16 14 C -0.06 -2.04 0.25 -52.81 -0.01 -2.06 16 15 C -0.13 -3.87 4.20 29.85 0.13 -3.75 16 16 C 0.47 16.03 5.57 71.24 0.40 16.43 16 17 O -0.53 -23.77 13.04 27.42 0.36 -23.41 16 18 O -0.51 -13.26 13.27 -51.40 -0.68 -13.94 16 19 C -0.12 -4.21 4.30 30.75 0.13 -4.08 16 20 C 0.05 1.91 6.56 72.08 0.47 2.39 16 21 O -0.39 -13.42 10.77 -148.98 -1.60 -15.03 16 22 C 0.06 1.93 6.62 72.01 0.48 2.41 16 23 C -0.15 -4.13 4.63 30.69 0.14 -3.99 16 24 H 0.05 2.38 6.39 -2.38 -0.02 2.36 16 25 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 26 H 0.02 0.86 4.38 -2.39 -0.01 0.85 16 27 H 0.12 5.22 5.44 -2.49 -0.01 5.20 16 28 H 0.08 2.72 2.66 -2.39 -0.01 2.72 16 29 H 0.27 12.46 8.31 -92.71 -0.77 11.69 16 30 H 0.14 4.08 2.94 -2.39 -0.01 4.07 16 31 H 0.15 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.42 7.88 9.10 -74.06 -0.67 7.21 16 33 H 0.06 2.51 6.06 -2.39 -0.01 2.50 16 34 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.04 1.92 5.71 -2.39 -0.01 1.90 16 37 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.01 0.57 7.38 -2.39 -0.02 0.55 16 39 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.09 2.64 5.27 -2.39 -0.01 2.62 16 Total: -1.00 -74.74 293.50 3.41 -71.33 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.43 Total: 27.90 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 4.24 Total: 11.63 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -1.51 Total: -67.79 kcal Atomic # 8 Polarization: -86.41 SS G_CDS: -1.77 Total: -88.18 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -74.74 3.41 -71.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589718780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.677 kcal (2) G-P(sol) polarization free energy of solvation -74.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds