Wall clock time and date at job start Tue Mar 31 2020 05:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47343 * 2 1 4 4 C 1.53002 * 109.46802 * 239.99703 * 2 1 3 5 5 O 1.42901 * 109.46848 * 120.00142 * 2 1 3 6 6 C 1.42895 * 114.00310 * 59.99707 * 5 2 1 7 7 H 1.08999 * 115.54959 * 4.28234 * 6 5 2 8 8 C 1.53003 * 117.50288 * 218.60634 * 6 5 2 9 9 C 1.52998 * 60.03167 * 252.47572 * 8 6 5 10 10 H 1.08998 * 117.49942 * 107.50264 * 9 8 6 11 11 C 1.50695 * 117.49794 * 252.51972 * 9 8 6 12 12 O 1.21290 * 120.00216 * 68.60706 * 11 9 8 13 13 N 1.34782 * 120.00041 * 248.61262 * 11 9 8 14 14 C 1.37100 * 120.00160 * 179.97438 * 13 11 9 15 15 H 1.07994 * 119.99947 * 16.61750 * 14 13 11 16 16 C 1.38946 * 120.00184 * 196.61697 * 14 13 11 17 17 N 1.31413 * 119.99748 * 21.59794 * 16 14 13 18 18 Si 1.86795 * 120.00359 * 201.59789 * 16 14 13 19 19 H 1.48498 * 109.47344 * 90.00016 * 18 16 14 20 20 H 1.48505 * 109.47339 * 210.00242 * 18 16 14 21 21 H 1.48505 * 109.46841 * 330.00045 * 18 16 14 22 22 C 1.46499 * 119.99986 * 359.97438 * 13 11 9 23 23 C 1.50695 * 109.47213 * 83.98040 * 22 13 11 24 24 O 1.20830 * 120.00159 * 359.97438 * 23 22 13 25 25 O 1.34228 * 120.00375 * 180.02562 * 23 22 13 26 26 H 1.09005 * 109.47255 * 300.00320 * 1 2 3 27 27 H 1.09001 * 109.46755 * 59.99720 * 1 2 3 28 28 H 1.08999 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46862 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47424 * 299.99870 * 3 2 1 31 31 H 1.09004 * 109.47164 * 60.00202 * 3 2 1 32 32 H 1.08991 * 109.47469 * 300.00137 * 4 2 1 33 33 H 1.09001 * 109.46994 * 60.00724 * 4 2 1 34 34 H 1.09006 * 109.46465 * 179.97438 * 4 2 1 35 35 H 1.09002 * 117.49195 * 359.97438 * 8 6 5 36 36 H 1.08999 * 117.49455 * 144.97030 * 8 6 5 37 37 H 0.97005 * 120.00129 * 179.97438 * 17 16 14 38 38 H 1.08996 * 109.47292 * 203.98228 * 22 13 11 39 39 H 1.09002 * 109.47148 * 323.98020 * 22 13 11 40 40 H 0.96697 * 117.00379 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.5846 -2.0355 1.2645 7 1 1.0191 -2.4148 0.4134 8 6 1.2109 -2.5616 2.6518 9 6 2.5133 -3.0136 1.9883 10 1 3.4464 -2.6185 2.3900 11 6 2.5757 -4.4271 1.4694 12 8 1.9051 -4.7520 0.5124 13 7 3.3767 -5.3303 2.0688 14 6 3.4331 -6.6163 1.5970 15 1 3.0617 -6.8459 0.6093 16 6 3.9682 -7.6243 2.3897 17 7 4.0266 -7.4734 3.6938 18 14 4.6045 -9.1938 1.6017 19 1 6.0428 -9.0329 1.2693 20 1 4.4389 -10.3256 2.5488 21 1 3.8375 -9.4707 0.3606 22 6 4.1871 -4.9378 3.2244 23 6 3.3535 -5.0283 4.4765 24 8 2.2006 -5.3838 4.4104 25 8 3.8914 -4.7131 5.6652 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 1.2873 -1.8689 3.4900 36 1 0.3993 -3.2866 2.7133 37 1 4.3998 -8.1772 4.2473 38 1 5.0449 -5.6047 3.3100 39 1 4.5352 -3.9132 3.0929 40 1 3.3178 -4.7870 6.4402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590397006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:25 Heat of formation + Delta-G solvation = -133.456128 kcal Electronic energy + Delta-G solvation = -23799.395083 eV Core-core repulsion = 20195.077547 eV Total energy + Delta-G solvation = -3604.317537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.66966 -38.99662 -38.04555 -35.64479 -34.98401 -34.36404 -32.34497 -31.68046 -27.72243 -27.50139 -27.30895 -25.53465 -22.82582 -21.97297 -21.06554 -19.78076 -18.64395 -17.15027 -17.12802 -16.76155 -15.90732 -15.60417 -15.21531 -14.79014 -14.70896 -14.42167 -14.00953 -13.63971 -13.28761 -13.11025 -12.91893 -12.38046 -12.17649 -12.01058 -11.92129 -11.79816 -11.72337 -11.69875 -11.55789 -11.40788 -10.98983 -10.71816 -10.49443 -10.43117 -10.34637 -10.30442 -9.92955 -9.61499 -9.05242 -8.89489 -8.50221 -7.92824 -6.46882 -3.90730 3.11374 3.23350 3.28462 3.42298 3.54011 3.60287 3.99401 4.20112 4.45662 4.78865 4.85604 4.87183 5.02672 5.03901 5.25705 5.43174 5.50432 5.52784 5.56314 5.62380 5.68851 5.71798 5.84108 5.85670 5.95432 6.04086 6.12361 6.16819 6.27656 6.36556 6.43429 6.50869 6.60114 7.50379 7.51855 7.54533 7.97215 8.34975 9.05377 9.07065 9.29665 9.83482 10.61914 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022145 B = 0.004916 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.095453 B = 5693.831737 C = 6481.849600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.347 6.347 6 C 0.045 3.955 7 H 0.123 0.877 8 C -0.155 4.155 9 C -0.178 4.178 10 H 0.114 0.886 11 C 0.491 3.509 12 O -0.579 6.579 13 N -0.426 5.426 14 C -0.306 4.306 15 H 0.108 0.892 16 C 0.029 3.971 17 N -0.880 5.880 18 Si 0.930 3.070 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.269 1.269 22 C 0.146 3.854 23 C 0.491 3.509 24 O -0.501 6.501 25 O -0.535 6.535 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.271 0.729 38 H 0.127 0.873 39 H 0.078 0.922 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.372 13.284 -1.377 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.069 3.931 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.266 6.266 6 C -0.013 4.013 7 H 0.141 0.859 8 C -0.193 4.193 9 C -0.200 4.200 10 H 0.132 0.868 11 C 0.280 3.720 12 O -0.463 6.463 13 N -0.144 5.144 14 C -0.433 4.433 15 H 0.126 0.874 16 C -0.173 4.173 17 N -0.520 5.520 18 Si 0.757 3.243 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.193 1.193 22 C 0.019 3.981 23 C 0.331 3.669 24 O -0.386 6.386 25 O -0.346 6.346 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.592 12.998 -1.953 13.157 hybrid contribution -0.110 -1.165 0.485 1.267 sum -0.702 11.833 -1.468 11.944 Atomic orbital electron populations 1.22462 0.95641 1.02976 1.02335 1.21505 0.93212 0.92781 0.85641 1.21751 1.01943 0.93439 1.02199 1.22476 1.02319 1.01635 0.97242 1.87855 1.73595 1.22440 1.42723 1.22561 1.00564 0.81563 0.96599 0.85933 1.23320 0.97635 1.02132 0.96191 1.22697 0.96724 0.94928 1.05645 0.86802 1.19057 0.81327 0.85515 0.86147 1.90504 1.45140 1.80606 1.30007 1.43339 1.36497 1.09953 1.24616 1.19737 1.39783 0.82648 1.01102 0.87403 1.25244 0.97945 0.99437 0.94711 1.69820 1.43407 1.35454 1.03281 0.85858 0.79163 0.80268 0.79037 1.20240 1.21084 1.19347 1.20673 0.94744 1.00568 0.82072 1.23749 0.86976 0.71920 0.84248 1.90600 1.19512 1.42048 1.86437 1.84520 1.49421 1.82579 1.18122 0.91863 0.91809 0.91783 0.91832 0.91260 0.91961 0.91341 0.91887 0.91733 0.88340 0.87845 0.91866 0.85527 0.90386 0.75235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 8.38 37.16 0.31 -1.69 16 2 C 0.11 1.36 1.11 -90.62 -0.10 1.26 16 3 C -0.14 -1.37 8.84 37.16 0.33 -1.04 16 4 C -0.18 -2.26 8.38 37.16 0.31 -1.95 16 5 O -0.35 -5.47 10.24 -35.23 -0.36 -5.84 16 6 C 0.05 0.80 4.47 -26.69 -0.12 0.68 16 7 H 0.12 2.25 5.15 -51.93 -0.27 1.98 16 8 C -0.15 -2.78 10.18 -26.73 -0.27 -3.06 16 9 C -0.18 -3.54 5.14 -91.74 -0.47 -4.01 16 10 H 0.11 2.07 6.53 -51.93 -0.34 1.73 16 11 C 0.49 12.14 7.19 -10.99 -0.08 12.06 16 12 O -0.58 -15.99 15.90 5.55 0.09 -15.90 16 13 N -0.43 -10.84 2.18 -116.10 -0.25 -11.09 16 14 C -0.31 -8.42 9.34 -14.93 -0.14 -8.56 16 15 H 0.11 3.11 7.37 -52.49 -0.39 2.73 16 16 C 0.03 0.77 4.87 -17.47 -0.09 0.68 16 17 N -0.88 -23.11 9.29 55.50 0.52 -22.60 16 18 Si 0.93 20.48 29.60 -169.99 -5.03 15.45 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 20 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 22 C 0.15 3.22 4.97 -5.20 -0.03 3.20 16 23 C 0.49 10.98 6.38 36.00 0.23 11.21 16 24 O -0.50 -13.01 16.79 -18.75 -0.31 -13.33 16 25 O -0.54 -9.75 13.42 -39.25 -0.53 -10.28 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.80 6.71 -51.93 -0.35 0.45 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.00 6.53 -51.93 -0.34 0.66 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 37 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.13 2.89 6.37 -51.93 -0.33 2.55 16 39 H 0.08 1.43 6.27 -51.93 -0.33 1.11 16 40 H 0.39 5.49 9.10 45.56 0.41 5.90 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -32.99 333.63 -5.83 -38.82 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -4.86 Total: 10.95 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -0.11 Total: 8.78 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.26 Total: -33.69 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -1.11 Total: -45.34 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.99 -5.83 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590397006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.637 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds