Wall clock time and date at job start Tue Mar 31 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47343 * 2 1 4 4 C 1.53002 * 109.46802 * 239.99703 * 2 1 3 5 5 O 1.42901 * 109.46848 * 120.00142 * 2 1 3 6 6 C 1.42895 * 114.00310 * 59.99707 * 5 2 1 7 7 H 1.08999 * 115.54959 * 4.28234 * 6 5 2 8 8 C 1.53003 * 117.50288 * 218.60634 * 6 5 2 9 9 C 1.52998 * 60.03167 * 252.47572 * 8 6 5 10 10 H 1.08998 * 117.49942 * 107.50264 * 9 8 6 11 11 C 1.50695 * 117.49794 * 252.51972 * 9 8 6 12 12 O 1.21290 * 120.00216 * 68.60706 * 11 9 8 13 13 N 1.34782 * 120.00041 * 248.61262 * 11 9 8 14 14 C 1.37100 * 120.00160 * 179.97438 * 13 11 9 15 15 H 1.07994 * 119.99947 * 16.61750 * 14 13 11 16 16 C 1.38946 * 120.00184 * 196.61697 * 14 13 11 17 17 N 1.31413 * 119.99748 * 21.59794 * 16 14 13 18 18 Si 1.86795 * 120.00359 * 201.59789 * 16 14 13 19 19 H 1.48498 * 109.47344 * 90.00016 * 18 16 14 20 20 H 1.48505 * 109.47339 * 210.00242 * 18 16 14 21 21 H 1.48505 * 109.46841 * 330.00045 * 18 16 14 22 22 C 1.46499 * 119.99986 * 359.97438 * 13 11 9 23 23 C 1.50695 * 109.47213 * 83.98040 * 22 13 11 24 24 O 1.20830 * 120.00159 * 359.97438 * 23 22 13 25 25 O 1.34228 * 120.00375 * 180.02562 * 23 22 13 26 26 H 1.09005 * 109.47255 * 300.00320 * 1 2 3 27 27 H 1.09001 * 109.46755 * 59.99720 * 1 2 3 28 28 H 1.08999 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46862 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47424 * 299.99870 * 3 2 1 31 31 H 1.09004 * 109.47164 * 60.00202 * 3 2 1 32 32 H 1.08991 * 109.47469 * 300.00137 * 4 2 1 33 33 H 1.09001 * 109.46994 * 60.00724 * 4 2 1 34 34 H 1.09006 * 109.46465 * 179.97438 * 4 2 1 35 35 H 1.09002 * 117.49195 * 359.97438 * 8 6 5 36 36 H 1.08999 * 117.49455 * 144.97030 * 8 6 5 37 37 H 0.97005 * 120.00129 * 179.97438 * 17 16 14 38 38 H 1.08996 * 109.47292 * 203.98228 * 22 13 11 39 39 H 1.09002 * 109.47148 * 323.98020 * 22 13 11 40 40 H 0.96697 * 117.00379 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.5846 -2.0355 1.2645 7 1 1.0191 -2.4148 0.4134 8 6 1.2109 -2.5616 2.6518 9 6 2.5133 -3.0136 1.9883 10 1 3.4464 -2.6185 2.3900 11 6 2.5757 -4.4271 1.4694 12 8 1.9051 -4.7520 0.5124 13 7 3.3767 -5.3303 2.0688 14 6 3.4331 -6.6163 1.5970 15 1 3.0617 -6.8459 0.6093 16 6 3.9682 -7.6243 2.3897 17 7 4.0266 -7.4734 3.6938 18 14 4.6045 -9.1938 1.6017 19 1 6.0428 -9.0329 1.2693 20 1 4.4389 -10.3256 2.5488 21 1 3.8375 -9.4707 0.3606 22 6 4.1871 -4.9378 3.2244 23 6 3.3535 -5.0283 4.4765 24 8 2.2006 -5.3838 4.4104 25 8 3.8914 -4.7131 5.6652 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 1.2873 -1.8689 3.4900 36 1 0.3993 -3.2866 2.7133 37 1 4.3998 -8.1772 4.2473 38 1 5.0449 -5.6047 3.3100 39 1 4.5352 -3.9132 3.0929 40 1 3.3178 -4.7870 6.4402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590397006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:24 Heat of formation + Delta-G solvation = -155.781129 kcal Electronic energy + Delta-G solvation = -23800.363168 eV Core-core repulsion = 20195.077547 eV Total energy + Delta-G solvation = -3605.285621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.37280 -40.46703 -39.63515 -37.25101 -36.60024 -36.19737 -33.80517 -33.39523 -29.55752 -28.37186 -28.26361 -27.42338 -24.57810 -23.29368 -22.78274 -20.92168 -20.40565 -19.01894 -18.76533 -18.39906 -17.45676 -17.29319 -16.65416 -16.43230 -16.16565 -15.86804 -15.72864 -15.22624 -14.88425 -14.45192 -14.02599 -13.75826 -13.64322 -13.56822 -13.28008 -13.21668 -13.04288 -12.81927 -12.79412 -12.66341 -12.62278 -12.39805 -12.18125 -12.10496 -11.78503 -11.63543 -11.49695 -11.31388 -10.95417 -10.54226 -10.14294 -9.88725 -8.46066 -5.97925 1.34030 1.42116 1.54213 1.67064 1.83164 2.12111 2.39117 2.51435 2.79312 3.07834 3.14758 3.73354 3.87058 3.90392 3.98649 4.02642 4.08476 4.16982 4.26338 4.45103 4.65217 4.68426 4.72779 4.75876 4.82752 4.92185 4.94028 4.95981 4.96873 5.03816 5.19082 5.34850 5.42131 5.43386 5.97174 5.98645 6.29842 6.36145 7.06714 7.27926 7.47214 7.89677 8.60742 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022145 B = 0.004916 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.095453 B = 5693.831737 C = 6481.849600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 C -0.131 4.131 4 C -0.178 4.178 5 O -0.352 6.352 6 C 0.068 3.932 7 H 0.109 0.891 8 C -0.144 4.144 9 C -0.191 4.191 10 H 0.134 0.866 11 C 0.479 3.521 12 O -0.623 6.623 13 N -0.437 5.437 14 C -0.344 4.344 15 H 0.079 0.921 16 C 0.001 3.999 17 N -0.890 5.890 18 Si 0.994 3.006 19 H -0.259 1.259 20 H -0.279 1.279 21 H -0.278 1.278 22 C 0.142 3.858 23 C 0.499 3.501 24 O -0.543 6.543 25 O -0.519 6.519 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.276 0.724 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 14.898 -0.763 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.057 3.943 3 C -0.188 4.188 4 C -0.235 4.235 5 O -0.271 6.271 6 C 0.009 3.991 7 H 0.127 0.873 8 C -0.182 4.182 9 C -0.213 4.213 10 H 0.152 0.848 11 C 0.270 3.730 12 O -0.510 6.510 13 N -0.155 5.155 14 C -0.471 4.471 15 H 0.097 0.903 16 C -0.201 4.201 17 N -0.529 5.529 18 Si 0.818 3.182 19 H -0.183 1.183 20 H -0.204 1.204 21 H -0.203 1.203 22 C 0.017 3.983 23 C 0.341 3.659 24 O -0.432 6.432 25 O -0.331 6.331 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 0.310 14.644 -1.284 14.703 hybrid contribution -0.385 -1.622 0.332 1.699 sum -0.075 13.022 -0.952 13.057 Atomic orbital electron populations 1.22451 0.94643 1.02251 1.03854 1.21893 0.94202 0.93865 0.84323 1.21769 1.01855 0.91455 1.03746 1.22473 1.01934 1.00394 0.98717 1.87848 1.73855 1.21004 1.44371 1.22259 0.98698 0.82273 0.95884 0.87301 1.23322 0.95637 1.01806 0.97463 1.22609 0.98497 0.92558 1.07610 0.84784 1.19855 0.80409 0.87321 0.85436 1.90456 1.46847 1.81859 1.31853 1.43490 1.36948 1.09471 1.25558 1.19645 1.42174 0.84530 1.00792 0.90295 1.25986 0.97037 1.01926 0.95106 1.69894 1.42746 1.36352 1.03911 0.84928 0.79136 0.76489 0.77696 1.18341 1.20448 1.20309 1.20820 0.93853 1.02427 0.81220 1.23660 0.86156 0.70853 0.85227 1.90592 1.21255 1.44145 1.87207 1.84443 1.49265 1.81609 1.17828 0.91297 0.89379 0.93623 0.92022 0.88703 0.91446 0.94117 0.89205 0.92290 0.85648 0.89799 0.91450 0.86294 0.86599 0.72720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 8.38 71.98 0.60 -3.05 16 2 C 0.10 2.24 1.11 -10.79 -0.01 2.23 16 3 C -0.13 -2.26 8.84 71.98 0.64 -1.62 16 4 C -0.18 -4.32 8.38 71.98 0.60 -3.72 16 5 O -0.35 -10.59 10.24 -148.98 -1.53 -12.12 16 6 C 0.07 2.38 4.47 30.62 0.14 2.51 16 7 H 0.11 4.15 5.15 -2.39 -0.01 4.14 16 8 C -0.14 -5.13 10.18 30.59 0.31 -4.82 16 9 C -0.19 -7.58 5.14 -11.52 -0.06 -7.64 16 10 H 0.13 4.67 6.53 -2.39 -0.02 4.65 16 11 C 0.48 24.50 7.19 87.65 0.63 25.13 16 12 O -0.62 -36.32 15.90 -3.06 -0.05 -36.37 16 13 N -0.44 -22.78 2.18 -639.62 -1.39 -24.18 16 14 C -0.34 -19.62 9.34 84.04 0.78 -18.84 16 15 H 0.08 4.84 7.37 -2.91 -0.02 4.82 16 16 C 0.00 0.07 4.87 84.93 0.41 0.48 16 17 N -0.89 -46.50 9.29 21.66 0.20 -46.30 16 18 Si 0.99 42.15 29.60 68.60 2.03 44.18 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 20 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 22 C 0.14 6.21 4.97 85.63 0.43 6.64 16 23 C 0.50 21.86 6.38 71.23 0.45 22.31 16 24 O -0.54 -28.29 16.79 21.95 0.37 -27.92 16 25 O -0.52 -17.70 13.42 -51.40 -0.69 -18.39 16 26 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.04 1.12 6.71 -2.39 -0.02 1.10 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 1.21 6.53 -2.39 -0.02 1.19 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.13 3.74 8.14 -2.39 -0.02 3.72 16 36 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.28 13.57 8.31 -92.70 -0.77 12.80 16 38 H 0.12 5.37 6.37 -2.39 -0.02 5.35 16 39 H 0.12 4.07 6.27 -2.39 -0.01 4.05 16 40 H 0.41 10.52 9.10 -74.06 -0.67 9.85 16 Total: -1.00 -73.38 333.63 4.26 -69.12 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.39 Total: 32.36 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: 4.93 Total: 19.61 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -1.19 Total: -70.48 kcal Atomic # 8 Polarization: -92.90 SS G_CDS: -1.90 Total: -94.80 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -73.38 4.26 -69.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590397006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.663 kcal (2) G-P(sol) polarization free energy of solvation -73.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds