Wall clock time and date at job start Tue Mar 31 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47020 * 2 1 4 4 C 1.53000 * 109.47005 * 119.99624 * 2 1 3 5 5 C 1.50694 * 113.00066 * 304.69754 * 4 2 1 6 6 O 1.21290 * 120.00357 * 93.95991 * 5 4 2 7 7 N 1.34785 * 120.00195 * 273.95543 * 5 4 2 8 8 C 1.37098 * 119.99715 * 353.87212 * 7 5 4 9 9 H 1.08001 * 119.99613 * 39.23871 * 8 7 5 10 10 C 1.38950 * 120.00261 * 218.96121 * 8 7 5 11 11 N 1.31410 * 119.99617 * 8.94129 * 10 8 7 12 12 Si 1.86792 * 120.00423 * 188.94228 * 10 8 7 13 13 H 1.48495 * 109.47276 * 89.99931 * 12 10 8 14 14 H 1.48498 * 109.47225 * 210.00107 * 12 10 8 15 15 H 1.48503 * 109.47171 * 329.99868 * 12 10 8 16 16 C 1.46495 * 120.00255 * 173.86769 * 7 5 4 17 17 C 1.53000 * 109.47318 * 277.90408 * 16 7 5 18 18 C 1.50701 * 109.46985 * 179.97438 * 17 16 7 19 19 O 1.20830 * 119.99990 * 359.97438 * 18 17 16 20 20 O 1.34230 * 120.00085 * 180.02562 * 18 17 16 21 21 C 1.54034 * 113.81483 * 76.52491 * 4 2 1 22 22 O 1.44573 * 85.38652 * 136.86647 * 21 4 2 23 23 C 1.44183 * 93.32234 * 335.80274 * 22 21 4 24 24 H 1.08992 * 109.47282 * 305.62112 * 1 2 3 25 25 H 1.08997 * 109.46989 * 65.62489 * 1 2 3 26 26 H 1.09004 * 109.46939 * 185.61641 * 1 2 3 27 27 H 1.08996 * 109.47848 * 239.99964 * 2 1 3 28 28 H 1.08995 * 109.46968 * 299.99591 * 3 2 1 29 29 H 1.08998 * 109.47130 * 60.00063 * 3 2 1 30 30 H 1.09001 * 109.47176 * 179.97438 * 3 2 1 31 31 H 0.97002 * 120.00044 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.47040 * 37.90535 * 16 7 5 33 33 H 1.09003 * 109.46904 * 157.89937 * 16 7 5 34 34 H 1.08994 * 109.47343 * 299.99684 * 17 16 7 35 35 H 1.08998 * 109.47111 * 60.00492 * 17 16 7 36 36 H 0.96697 * 116.99933 * 179.97438 * 20 18 17 37 37 H 1.09004 * 113.86504 * 251.06916 * 21 4 2 38 38 H 1.08994 * 113.86757 * 22.77508 * 21 4 2 39 39 H 1.09003 * 113.86514 * 270.04370 * 23 22 21 40 40 H 1.08997 * 113.86223 * 138.34423 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.4917 -0.1426 2.5282 6 8 0.4963 -0.6188 3.0316 7 7 2.1076 0.9041 3.1128 8 6 3.3003 1.3626 2.6158 9 1 3.4602 1.4043 1.5485 10 6 4.3011 1.7790 3.4851 11 7 4.1775 1.5718 4.7768 12 14 5.8223 2.6332 2.8176 13 1 5.5897 4.0993 2.7787 14 1 6.9815 2.3390 3.6978 15 1 6.1049 2.1403 1.4456 16 6 1.5026 1.5520 4.2791 17 6 0.4364 2.5461 3.8144 18 6 -0.1864 3.2121 5.0143 19 8 0.1841 2.9211 6.1269 20 8 -1.1536 4.1278 4.8470 21 6 1.9377 -2.2559 1.1668 22 8 3.2627 -2.2586 1.7451 23 6 3.5656 -0.9328 1.2661 24 1 -0.3633 0.5985 0.8353 25 1 -0.3633 0.4241 -0.9360 26 1 -0.3633 -1.0228 0.1006 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 4.8763 1.8621 5.3837 32 1 1.0422 0.7968 4.9161 33 1 2.2724 2.0810 4.8409 34 1 0.8966 3.3013 3.1774 35 1 -0.3335 2.0170 3.2527 36 1 -1.5228 4.5272 5.6465 37 1 1.1711 -2.6822 1.8140 38 1 1.9004 -2.6413 0.1480 39 1 4.0242 -0.9152 0.2774 40 1 4.0892 -0.3107 1.9920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591058617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:21 Heat of formation + Delta-G solvation = -150.447034 kcal Electronic energy + Delta-G solvation = -24862.849857 eV Core-core repulsion = 21257.795539 eV Total energy + Delta-G solvation = -3605.054318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.28278 -41.24893 -39.40753 -37.23743 -36.85874 -36.04291 -33.78593 -32.39146 -29.69771 -28.69490 -26.99413 -26.70579 -25.91504 -23.05206 -22.48861 -21.52325 -20.49853 -19.21176 -18.37158 -17.75745 -17.57831 -17.01846 -16.90050 -16.59232 -16.42763 -15.97880 -15.56223 -15.29667 -14.87086 -14.36676 -14.30102 -14.02342 -13.85543 -13.55905 -13.31424 -13.27398 -13.10467 -12.86094 -12.76678 -12.57603 -12.49969 -12.04580 -11.97558 -11.85578 -11.70795 -11.63102 -11.28340 -11.04112 -10.84460 -10.66102 -10.14542 -9.41318 -8.19524 -6.03159 1.17840 1.46925 1.51998 1.62138 1.91068 2.05477 2.38412 2.91560 3.02444 3.12802 3.41027 3.91941 3.98740 4.11702 4.18940 4.27301 4.41467 4.46568 4.49805 4.52625 4.72965 4.78056 4.87998 4.93500 4.99584 5.09265 5.13209 5.20000 5.26231 5.34007 5.40269 5.45467 5.51250 5.57085 5.63551 5.70507 6.05782 6.46828 6.98943 7.14503 7.59026 8.01341 8.79978 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.008842 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.972516 B = 3165.905817 C = 4362.076552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.073 4.073 3 C -0.151 4.151 4 C -0.122 4.122 5 C 0.498 3.502 6 O -0.630 6.630 7 N -0.444 5.444 8 C -0.346 4.346 9 H 0.136 0.864 10 C -0.008 4.008 11 N -0.901 5.901 12 Si 0.973 3.027 13 H -0.272 1.272 14 H -0.295 1.295 15 H -0.240 1.240 16 C 0.127 3.873 17 C -0.114 4.114 18 C 0.493 3.507 19 O -0.550 6.550 20 O -0.507 6.507 21 C 0.053 3.947 22 O -0.418 6.418 23 C 0.027 3.973 24 H 0.028 0.972 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.268 0.732 32 H 0.020 0.980 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.426 0.574 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.674 3.979 -11.417 12.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.092 4.092 3 C -0.208 4.208 4 C -0.125 4.125 5 C 0.288 3.712 6 O -0.517 6.517 7 N -0.161 5.161 8 C -0.473 4.473 9 H 0.153 0.847 10 C -0.210 4.210 11 N -0.539 5.539 12 Si 0.797 3.203 13 H -0.198 1.198 14 H -0.222 1.222 15 H -0.163 1.163 16 C 0.003 3.997 17 C -0.153 4.153 18 C 0.337 3.663 19 O -0.440 6.440 20 O -0.320 6.320 21 C -0.024 4.024 22 O -0.338 6.338 23 C -0.048 4.048 24 H 0.047 0.953 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.124 0.876 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.288 0.712 37 H 0.090 0.910 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.635 3.371 -10.874 11.951 hybrid contribution 0.272 0.593 1.271 1.429 sum -3.364 3.964 -9.603 10.920 Atomic orbital electron populations 1.21739 0.94766 1.01518 1.01527 1.21132 0.96253 0.96989 0.94796 1.22110 1.01328 0.95129 1.02184 1.23468 0.97524 0.96647 0.94906 1.20172 0.84422 0.79592 0.87061 1.90501 1.30699 1.62954 1.67575 1.43503 1.19861 1.26126 1.26655 1.20552 0.89345 1.42261 0.95124 0.84684 1.26383 1.01666 0.97759 0.95165 1.69928 1.35055 1.44963 1.03959 0.85200 0.77027 0.78675 0.79426 1.19753 1.22184 1.16281 1.21073 0.95249 0.94155 0.89259 1.21631 0.99277 0.99720 0.94676 1.23428 0.76235 0.76098 0.90575 1.90712 1.61935 1.62771 1.28628 1.84501 1.50392 1.52809 1.44343 1.24141 0.85052 0.93346 0.99819 1.89694 1.32208 1.37293 1.74580 1.25001 0.95496 0.82098 1.02223 0.95252 0.90179 0.93058 0.87612 0.90681 0.93387 0.91637 0.92245 0.96135 0.87446 0.86260 0.88481 0.71228 0.91025 0.86258 0.87636 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.71 71.98 0.63 -3.17 16 2 C -0.07 -2.01 2.40 -10.79 -0.03 -2.04 16 3 C -0.15 -4.08 7.48 71.98 0.54 -3.54 16 4 C -0.12 -4.47 0.30 -52.23 -0.02 -4.49 16 5 C 0.50 23.13 4.99 87.65 0.44 23.56 16 6 O -0.63 -33.12 15.84 -3.06 -0.05 -33.17 16 7 N -0.44 -21.07 2.17 -635.54 -1.38 -22.45 16 8 C -0.35 -15.44 4.84 84.04 0.41 -15.03 16 9 H 0.14 5.26 2.81 -2.91 -0.01 5.25 16 10 C -0.01 -0.37 5.08 84.93 0.43 0.06 16 11 N -0.90 -47.83 10.93 21.66 0.24 -47.59 16 12 Si 0.97 36.54 29.56 68.60 2.03 38.57 16 13 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 14 H -0.30 -11.72 7.11 99.48 0.71 -11.02 16 15 H -0.24 -7.95 7.11 99.48 0.71 -7.24 16 16 C 0.13 6.23 4.14 86.38 0.36 6.59 16 17 C -0.11 -4.44 6.06 29.85 0.18 -4.26 16 18 C 0.49 18.03 8.33 71.24 0.59 18.62 16 19 O -0.55 -24.24 16.74 21.95 0.37 -23.88 16 20 O -0.51 -13.43 13.42 -51.42 -0.69 -14.12 16 21 C 0.05 1.86 8.04 72.30 0.58 2.45 16 22 O -0.42 -17.50 12.41 -148.98 -1.85 -19.35 16 23 C 0.03 1.00 6.68 72.30 0.48 1.49 16 24 H 0.03 0.96 7.41 -2.39 -0.02 0.94 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.42 7.91 -2.38 -0.02 1.40 16 27 H 0.11 2.25 8.09 -2.39 -0.02 2.23 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.56 6.19 -2.39 -0.01 1.55 16 30 H 0.06 1.75 6.05 -2.39 -0.01 1.73 16 31 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 32 H 0.02 1.13 7.55 -2.39 -0.02 1.11 16 33 H 0.11 5.78 5.22 -2.39 -0.01 5.77 16 34 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 35 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 36 H 0.43 7.02 9.10 -74.06 -0.67 6.35 16 37 H 0.07 2.78 7.58 -2.39 -0.02 2.77 16 38 H 0.12 3.07 8.06 -2.39 -0.02 3.05 16 39 H 0.11 3.00 8.10 -2.39 -0.02 2.98 16 40 H 0.12 5.02 4.77 -2.39 -0.01 5.01 16 Total: -1.00 -68.79 319.17 3.67 -65.12 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.41 Total: 36.63 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 4.60 Total: 20.24 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -1.14 Total: -70.05 kcal Atomic # 8 Polarization: -88.30 SS G_CDS: -2.22 Total: -90.52 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Total: -68.79 3.67 -65.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591058617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.326 kcal (2) G-P(sol) polarization free energy of solvation -68.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds