Wall clock time and date at job start Tue Mar 31 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47244 * 2 1 4 4 C 1.50701 * 109.47179 * 240.00052 * 2 1 3 5 5 H 1.08001 * 120.00183 * 240.00148 * 4 2 1 6 6 C 1.37874 * 119.99993 * 60.00439 * 4 2 1 7 7 N 1.31516 * 120.00019 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00080 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46773 * 269.99565 * 8 6 4 10 10 H 1.48499 * 109.47296 * 29.99416 * 8 6 4 11 11 H 1.48496 * 109.46986 * 149.99799 * 8 6 4 12 12 C 1.50701 * 109.46910 * 120.00320 * 2 1 3 13 13 O 1.21279 * 120.00292 * 105.62128 * 12 2 1 14 14 N 1.34781 * 120.00128 * 285.61834 * 12 2 1 15 15 C 1.46496 * 120.00430 * 185.52146 * 14 12 2 16 16 C 1.50698 * 109.47318 * 83.78165 * 15 14 12 17 17 O 1.20836 * 119.99705 * 0.02562 * 16 15 14 18 18 O 1.34220 * 120.00259 * 180.02562 * 16 15 14 19 19 C 1.46503 * 119.99447 * 5.52382 * 14 12 2 20 20 C 1.53179 * 109.54244 * 242.71637 * 19 14 12 21 21 C 1.53094 * 109.16671 * 183.15568 * 20 19 14 22 22 O 1.42902 * 109.41186 * 57.60527 * 21 20 19 23 23 C 1.42905 * 114.10189 * 298.84587 * 22 21 20 24 24 C 1.53089 * 109.41685 * 61.15636 * 23 22 21 25 25 H 1.08996 * 109.47330 * 183.71107 * 1 2 3 26 26 H 1.09000 * 109.47049 * 303.71643 * 1 2 3 27 27 H 1.09007 * 109.46995 * 63.71030 * 1 2 3 28 28 H 0.96999 * 120.00007 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47118 * 203.78778 * 15 14 12 30 30 H 1.09001 * 109.47077 * 323.78298 * 15 14 12 31 31 H 0.96701 * 117.00227 * 179.97438 * 18 16 15 32 32 H 1.09000 * 109.54559 * 2.98433 * 19 14 12 33 33 H 1.09003 * 109.52273 * 303.06183 * 20 19 14 34 34 H 1.09000 * 109.52412 * 63.24466 * 20 19 14 35 35 H 1.09002 * 109.47566 * 297.62543 * 21 20 19 36 36 H 1.08998 * 109.48076 * 177.58991 * 21 20 19 37 37 H 1.08997 * 109.47568 * 301.17609 * 23 22 21 38 38 H 1.09000 * 109.49145 * 181.14898 * 23 22 21 39 39 H 1.08995 * 109.52144 * 182.48692 * 24 23 22 40 40 H 1.09001 * 109.51618 * 62.29525 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.6297 -0.5458 -4.4123 10 1 2.4859 -2.5661 -3.7120 11 1 1.3432 -0.9491 -5.1120 12 6 2.0323 -0.7105 1.2304 13 8 2.5010 -1.8252 1.1382 14 7 1.9606 -0.1071 2.4335 15 6 2.5572 -0.7449 3.6097 16 6 4.0276 -0.4194 3.6661 17 8 4.5258 0.2748 2.8117 18 8 4.7836 -0.9004 4.6654 19 6 1.2859 1.1867 2.5650 20 6 2.2935 2.2458 3.0228 21 6 1.5643 3.5754 3.2333 22 8 0.5175 3.3968 4.1896 23 6 -0.4795 2.4526 3.7939 24 6 0.1675 1.0779 3.6060 25 1 -0.3634 -1.0255 0.0665 26 1 -0.3633 0.5704 0.8548 27 1 -0.3633 0.4552 -0.9214 28 1 0.7089 1.1614 -3.4844 29 1 2.0683 -0.3750 4.5108 30 1 2.4266 -1.8250 3.5427 31 1 5.7215 -0.6648 4.6589 32 1 0.8621 1.4763 1.6034 33 1 2.7533 1.9303 3.9594 34 1 3.0636 2.3692 2.2614 35 1 1.1392 3.9104 2.2872 36 1 2.2685 4.3220 3.6003 37 1 -0.9314 2.7730 2.8553 38 1 -1.2477 2.3904 4.5647 39 1 -0.5827 0.3663 3.2616 40 1 0.5844 0.7389 4.5544 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:16 Heat of formation + Delta-G solvation = -170.165516 kcal Electronic energy + Delta-G solvation = -24451.159948 eV Core-core repulsion = 20845.250572 eV Total energy + Delta-G solvation = -3605.909375 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.59575 -39.41331 -38.41970 -36.01207 -35.33564 -33.89172 -31.75015 -31.09491 -30.73610 -28.10737 -25.24977 -24.53465 -23.57847 -22.78357 -21.38011 -20.08231 -18.67932 -17.98694 -16.80619 -16.54255 -16.39089 -15.91717 -15.81027 -15.29358 -15.04502 -14.61844 -14.45077 -14.28532 -13.60682 -13.43945 -13.00643 -12.87011 -12.56915 -12.32100 -12.12296 -11.60620 -11.41212 -11.25101 -11.18834 -11.04137 -10.96420 -10.71019 -10.59134 -10.41965 -10.33337 -10.18952 -10.00321 -9.62958 -9.03181 -8.72446 -8.38327 -8.33706 -6.05834 -4.08765 2.40352 2.87072 3.32726 3.38304 3.44191 3.48307 3.74326 3.88820 4.44844 4.71035 4.87402 4.95454 5.01126 5.13864 5.25852 5.27775 5.38827 5.43381 5.47185 5.59061 5.69024 5.76887 5.84487 6.00701 6.02780 6.19287 6.30903 6.55122 6.62182 6.77296 6.81026 6.89813 7.18481 7.36680 7.70992 7.86568 8.02866 8.06040 8.30404 8.98003 9.06945 9.56285 11.01685 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.006428 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.209841 B = 4354.754995 C = 5442.544294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.034 3.966 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.072 0.928 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.286 1.286 12 C 0.531 3.469 13 O -0.538 6.538 14 N -0.607 5.607 15 C 0.123 3.877 16 C 0.455 3.545 17 O -0.495 6.495 18 O -0.524 6.524 19 C 0.132 3.868 20 C -0.162 4.162 21 C 0.063 3.937 22 O -0.386 6.386 23 C 0.064 3.936 24 C -0.168 4.168 25 H 0.032 0.968 26 H 0.018 0.982 27 H 0.097 0.903 28 H 0.261 0.739 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.405 0.595 32 H 0.119 0.881 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.259 3.849 15.121 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.013 3.987 3 H 0.068 0.932 4 C -0.538 4.538 5 H 0.090 0.910 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.197 1.197 11 H -0.212 1.212 12 C 0.323 3.677 13 O -0.412 6.412 14 N -0.341 5.341 15 C -0.003 4.003 16 C 0.295 3.705 17 O -0.381 6.381 18 O -0.336 6.336 19 C 0.029 3.971 20 C -0.201 4.201 21 C -0.014 4.014 22 O -0.305 6.305 23 C -0.013 4.013 24 C -0.206 4.206 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.263 0.737 32 H 0.137 0.863 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.367 3.509 14.810 15.281 hybrid contribution 1.158 -0.400 -1.013 1.589 sum -0.209 3.108 13.797 14.144 Atomic orbital electron populations 1.21893 0.96310 0.99571 1.01850 1.18861 0.94164 0.96753 0.88883 0.93168 1.21108 1.31018 1.12687 0.88987 0.91029 1.24921 0.95062 0.95073 0.99054 1.69848 1.37028 1.23078 1.23603 0.86452 0.78486 0.80287 0.82027 1.20658 1.19730 1.21201 1.22158 0.75725 0.85905 0.83875 1.90534 1.45183 1.20133 1.85394 1.48096 1.56814 1.21712 1.07513 1.20676 0.85825 1.01861 0.91945 1.24420 0.91244 0.76655 0.78212 1.90748 1.74058 1.35283 1.37963 1.84522 1.26529 1.72262 1.50241 1.21436 0.91771 0.82717 1.01220 1.22603 0.99379 0.95553 1.02577 1.22602 0.89395 0.96495 0.92938 1.87893 1.36009 1.61697 1.44919 1.22546 0.90415 0.87452 1.00903 1.22640 0.99159 0.98898 0.99932 0.94875 0.96345 0.88454 0.92901 0.86889 0.86355 0.73676 0.86301 0.91899 0.89443 0.92436 0.88831 0.92513 0.88726 0.89907 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.64 37.16 0.32 -2.78 16 2 C 0.03 0.85 1.78 -92.92 -0.16 0.69 16 3 H 0.05 1.30 7.32 -51.93 -0.38 0.92 16 4 C -0.50 -14.27 8.36 -34.44 -0.29 -14.56 16 5 H 0.07 2.18 6.85 -52.49 -0.36 1.82 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -24.87 11.30 55.43 0.63 -24.25 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.53 12.20 6.68 -10.98 -0.07 12.13 16 13 O -0.54 -14.03 15.23 5.56 0.08 -13.94 16 14 N -0.61 -10.72 1.96 -167.26 -0.33 -11.05 16 15 C 0.12 1.80 5.28 -5.20 -0.03 1.78 16 16 C 0.46 7.12 7.48 36.00 0.27 7.39 16 17 O -0.49 -9.59 15.79 -18.76 -0.30 -9.89 16 18 O -0.52 -6.26 13.42 -39.23 -0.53 -6.79 16 19 C 0.13 1.99 1.81 -67.74 -0.12 1.87 16 20 C -0.16 -2.30 4.42 -26.59 -0.12 -2.41 16 21 C 0.06 0.77 6.84 37.21 0.25 1.02 16 22 O -0.39 -4.86 10.77 -35.23 -0.38 -5.24 16 23 C 0.06 0.70 6.84 37.20 0.25 0.95 16 24 C -0.17 -1.97 5.36 -26.59 -0.14 -2.12 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.02 0.33 5.83 -51.93 -0.30 0.03 16 27 H 0.10 2.41 5.98 -51.93 -0.31 2.10 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.11 1.25 6.23 -51.93 -0.32 0.92 16 30 H 0.12 1.76 7.54 -51.93 -0.39 1.37 16 31 H 0.40 3.22 9.10 45.56 0.41 3.64 16 32 H 0.12 2.02 4.15 -51.93 -0.22 1.80 16 33 H 0.06 0.87 7.04 -51.93 -0.37 0.50 16 34 H 0.09 1.43 7.87 -51.93 -0.41 1.02 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 LS Contribution 319.62 15.07 4.82 4.82 Total: -1.00 -33.97 319.62 -5.60 -39.57 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.65 Total: 4.34 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 0.07 Total: 5.51 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.30 Total: -35.29 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -1.12 Total: -35.85 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.97 -5.60 -39.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.593 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds