Wall clock time and date at job start Tue Mar 31 2020 06:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47244 * 2 1 4 4 C 1.50701 * 109.47179 * 240.00052 * 2 1 3 5 5 H 1.08001 * 120.00183 * 240.00148 * 4 2 1 6 6 C 1.37874 * 119.99993 * 60.00439 * 4 2 1 7 7 N 1.31516 * 120.00019 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00080 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46773 * 269.99565 * 8 6 4 10 10 H 1.48499 * 109.47296 * 29.99416 * 8 6 4 11 11 H 1.48496 * 109.46986 * 149.99799 * 8 6 4 12 12 C 1.50701 * 109.46910 * 120.00320 * 2 1 3 13 13 O 1.21279 * 120.00292 * 105.62128 * 12 2 1 14 14 N 1.34781 * 120.00128 * 285.61834 * 12 2 1 15 15 C 1.46496 * 120.00430 * 185.52146 * 14 12 2 16 16 C 1.50698 * 109.47318 * 83.78165 * 15 14 12 17 17 O 1.20836 * 119.99705 * 0.02562 * 16 15 14 18 18 O 1.34220 * 120.00259 * 180.02562 * 16 15 14 19 19 C 1.46503 * 119.99447 * 5.52382 * 14 12 2 20 20 C 1.53179 * 109.54244 * 242.71637 * 19 14 12 21 21 C 1.53094 * 109.16671 * 183.15568 * 20 19 14 22 22 O 1.42902 * 109.41186 * 57.60527 * 21 20 19 23 23 C 1.42905 * 114.10189 * 298.84587 * 22 21 20 24 24 C 1.53089 * 109.41685 * 61.15636 * 23 22 21 25 25 H 1.08996 * 109.47330 * 183.71107 * 1 2 3 26 26 H 1.09000 * 109.47049 * 303.71643 * 1 2 3 27 27 H 1.09007 * 109.46995 * 63.71030 * 1 2 3 28 28 H 0.96999 * 120.00007 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47118 * 203.78778 * 15 14 12 30 30 H 1.09001 * 109.47077 * 323.78298 * 15 14 12 31 31 H 0.96701 * 117.00227 * 179.97438 * 18 16 15 32 32 H 1.09000 * 109.54559 * 2.98433 * 19 14 12 33 33 H 1.09003 * 109.52273 * 303.06183 * 20 19 14 34 34 H 1.09000 * 109.52412 * 63.24466 * 20 19 14 35 35 H 1.09002 * 109.47566 * 297.62543 * 21 20 19 36 36 H 1.08998 * 109.48076 * 177.58991 * 21 20 19 37 37 H 1.08997 * 109.47568 * 301.17609 * 23 22 21 38 38 H 1.09000 * 109.49145 * 181.14898 * 23 22 21 39 39 H 1.08995 * 109.52144 * 182.48692 * 24 23 22 40 40 H 1.09001 * 109.51618 * 62.29525 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.6297 -0.5458 -4.4123 10 1 2.4859 -2.5661 -3.7120 11 1 1.3432 -0.9491 -5.1120 12 6 2.0323 -0.7105 1.2304 13 8 2.5010 -1.8252 1.1382 14 7 1.9606 -0.1071 2.4335 15 6 2.5572 -0.7449 3.6097 16 6 4.0276 -0.4194 3.6661 17 8 4.5258 0.2748 2.8117 18 8 4.7836 -0.9004 4.6654 19 6 1.2859 1.1867 2.5650 20 6 2.2935 2.2458 3.0228 21 6 1.5643 3.5754 3.2333 22 8 0.5175 3.3968 4.1896 23 6 -0.4795 2.4526 3.7939 24 6 0.1675 1.0779 3.6060 25 1 -0.3634 -1.0255 0.0665 26 1 -0.3633 0.5704 0.8548 27 1 -0.3633 0.4552 -0.9214 28 1 0.7089 1.1614 -3.4844 29 1 2.0683 -0.3750 4.5108 30 1 2.4266 -1.8250 3.5427 31 1 5.7215 -0.6648 4.6589 32 1 0.8621 1.4763 1.6034 33 1 2.7533 1.9303 3.9594 34 1 3.0636 2.3692 2.2614 35 1 1.1392 3.9104 2.2872 36 1 2.2685 4.3220 3.6003 37 1 -0.9314 2.7730 2.8553 38 1 -1.2477 2.3904 4.5647 39 1 -0.5827 0.3663 3.2616 40 1 0.5844 0.7389 4.5544 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:15 Heat of formation + Delta-G solvation = -194.786949 kcal Electronic energy + Delta-G solvation = -24452.227613 eV Core-core repulsion = 20845.250572 eV Total energy + Delta-G solvation = -3606.977041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.93639 -40.63826 -39.78634 -37.24781 -36.69695 -35.89480 -33.02432 -32.64205 -32.05854 -29.50752 -27.29938 -25.75344 -24.65537 -24.28192 -22.79149 -21.31469 -20.13257 -19.17719 -18.44618 -18.13812 -17.80769 -17.26419 -16.82709 -16.69771 -16.61877 -16.15440 -15.67776 -15.58718 -15.10659 -14.77823 -14.50934 -14.33934 -14.11317 -13.43790 -13.30281 -13.24199 -13.01584 -12.76290 -12.72264 -12.54536 -12.33947 -12.27874 -12.10575 -12.05650 -12.04547 -11.63569 -11.32096 -11.10223 -10.72425 -10.54754 -10.33102 -9.81463 -8.18632 -6.29153 1.17294 1.37449 1.37898 1.48043 1.55063 1.91532 2.34483 2.44227 2.98211 3.10573 3.60087 3.75612 3.82490 4.03200 4.05626 4.19517 4.28444 4.33107 4.36032 4.51959 4.62508 4.68081 4.74119 4.82981 4.87056 4.89100 4.99036 5.06955 5.15502 5.19403 5.38595 5.48466 5.59202 5.69972 5.91545 6.14161 6.26095 6.42162 6.76767 6.95536 7.30368 7.40588 8.87053 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.006428 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.209841 B = 4354.754995 C = 5442.544294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 H 0.033 0.967 4 C -0.532 4.532 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.270 1.270 12 C 0.530 3.470 13 O -0.580 6.580 14 N -0.597 5.597 15 C 0.117 3.883 16 C 0.460 3.540 17 O -0.541 6.541 18 O -0.508 6.508 19 C 0.124 3.876 20 C -0.153 4.153 21 C 0.068 3.932 22 O -0.391 6.391 23 C 0.062 3.938 24 C -0.159 4.159 25 H 0.025 0.975 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.266 0.734 29 H 0.160 0.840 30 H 0.119 0.881 31 H 0.425 0.575 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.110 0.890 37 H 0.056 0.944 38 H 0.124 0.876 39 H 0.089 0.911 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 4.350 17.019 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.012 3.988 3 H 0.051 0.949 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.195 1.195 12 C 0.322 3.678 13 O -0.459 6.459 14 N -0.329 5.329 15 C -0.008 4.008 16 C 0.301 3.699 17 O -0.430 6.430 18 O -0.321 6.321 19 C 0.022 3.978 20 C -0.192 4.192 21 C -0.010 4.010 22 O -0.310 6.310 23 C -0.015 4.015 24 C -0.197 4.197 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.177 0.823 30 H 0.137 0.863 31 H 0.286 0.714 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.074 0.926 38 H 0.142 0.858 39 H 0.107 0.893 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.242 4.046 16.769 17.395 hybrid contribution 1.479 -0.531 -1.514 2.182 sum -0.763 3.515 15.256 15.674 Atomic orbital electron populations 1.21687 0.94577 0.99424 1.02390 1.18727 0.95568 0.95379 0.89173 0.94949 1.21252 1.31848 1.12618 0.91324 0.93896 1.25548 0.95117 0.95750 1.01240 1.69920 1.36887 1.23373 1.24411 0.85633 0.78442 0.78781 0.79280 1.20222 1.20427 1.19452 1.21694 0.75558 0.85373 0.85161 1.90500 1.47228 1.21771 1.86369 1.47879 1.56028 1.22147 1.06859 1.21015 0.85815 1.01928 0.92017 1.24488 0.91754 0.75686 0.77929 1.90753 1.74942 1.37549 1.39766 1.84464 1.27975 1.71257 1.48400 1.21634 0.93025 0.81611 1.01557 1.22487 0.98543 0.96466 1.01720 1.22584 0.89653 0.95550 0.93165 1.87898 1.36122 1.62102 1.44904 1.22732 0.90430 0.86290 1.02071 1.22614 0.97852 0.99954 0.99304 0.95621 0.92433 0.90737 0.92440 0.82321 0.86276 0.71383 0.88588 0.91194 0.92501 0.92647 0.87186 0.92562 0.85827 0.89285 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.64 71.98 0.62 -4.96 16 2 C 0.03 1.68 1.78 -12.29 -0.02 1.65 16 3 H 0.03 1.76 7.32 -2.39 -0.02 1.74 16 4 C -0.53 -31.61 8.36 25.60 0.21 -31.39 16 5 H 0.04 2.74 6.85 -2.91 -0.02 2.72 16 6 C 0.02 1.30 5.30 84.65 0.45 1.75 16 7 N -0.91 -50.94 11.30 21.45 0.24 -50.69 16 8 Si 0.95 45.57 29.54 68.60 2.03 47.60 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 C 0.53 24.96 6.68 87.66 0.59 25.54 16 13 O -0.58 -31.27 15.23 -3.03 -0.05 -31.32 16 14 N -0.60 -20.76 1.96 -801.48 -1.57 -22.33 16 15 C 0.12 3.21 5.28 85.63 0.45 3.66 16 16 C 0.46 13.83 7.48 71.24 0.53 14.36 16 17 O -0.54 -21.09 15.79 21.94 0.35 -20.74 16 18 O -0.51 -10.96 13.42 -51.32 -0.69 -11.65 16 19 C 0.12 3.60 1.81 45.11 0.08 3.68 16 20 C -0.15 -4.19 4.42 30.69 0.14 -4.05 16 21 C 0.07 1.53 6.84 72.01 0.49 2.02 16 22 O -0.39 -8.62 10.77 -148.98 -1.60 -10.22 16 23 C 0.06 1.12 6.84 72.01 0.49 1.62 16 24 C -0.16 -3.22 5.36 30.68 0.16 -3.06 16 25 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 2.09 5.83 -2.39 -0.01 2.08 16 27 H 0.07 3.74 5.98 -2.38 -0.01 3.72 16 28 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.16 2.87 6.23 -2.39 -0.01 2.85 16 30 H 0.12 3.37 7.54 -2.39 -0.02 3.35 16 31 H 0.42 5.82 9.10 -74.06 -0.67 5.14 16 32 H 0.10 3.23 4.15 -2.39 -0.01 3.22 16 33 H 0.07 1.79 7.04 -2.39 -0.02 1.78 16 34 H 0.06 1.91 7.87 -2.39 -0.02 1.89 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.09 1.52 6.44 -2.39 -0.02 1.50 16 Total: -1.00 -76.19 319.62 3.31 -72.88 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.40 Total: 15.64 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 4.20 Total: 10.84 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -1.33 Total: -73.02 kcal Atomic # 8 Polarization: -71.94 SS G_CDS: -1.99 Total: -73.93 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -76.19 3.31 -72.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.905 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds