Wall clock time and date at job start Tue Mar 31 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46662 * 2 1 4 4 C 1.50700 * 109.47250 * 119.99250 * 2 1 3 5 5 H 1.07999 * 119.99719 * 115.15924 * 4 2 1 6 6 C 1.37879 * 120.00393 * 295.16544 * 4 2 1 7 7 N 1.31511 * 120.00438 * 163.88469 * 6 4 2 8 8 Si 1.86806 * 119.99784 * 344.16465 * 6 4 2 9 9 H 1.48505 * 109.46769 * 269.72267 * 8 6 4 10 10 H 1.48500 * 109.47033 * 29.72103 * 8 6 4 11 11 H 1.48501 * 109.47106 * 149.72499 * 8 6 4 12 12 C 1.50692 * 109.47424 * 239.99603 * 2 1 3 13 13 O 1.21286 * 120.00175 * 262.33506 * 12 2 1 14 14 N 1.34775 * 119.99944 * 82.32855 * 12 2 1 15 15 C 1.46504 * 120.00050 * 184.56287 * 14 12 2 16 16 C 1.50700 * 109.47289 * 86.73678 * 15 14 12 17 17 O 1.20826 * 119.99822 * 0.02562 * 16 15 14 18 18 O 1.34223 * 119.99945 * 180.02562 * 16 15 14 19 19 C 1.46500 * 119.99995 * 4.56399 * 14 12 2 20 20 C 1.53189 * 109.54263 * 235.55381 * 19 14 12 21 21 C 1.53088 * 109.16162 * 183.15033 * 20 19 14 22 22 O 1.42911 * 109.41449 * 57.61180 * 21 20 19 23 23 C 1.42902 * 114.09196 * 298.83714 * 22 21 20 24 24 C 1.53087 * 109.41691 * 61.16238 * 23 22 21 25 25 H 1.09004 * 109.47225 * 294.87090 * 1 2 3 26 26 H 1.08997 * 109.47632 * 54.86955 * 1 2 3 27 27 H 1.09001 * 109.47350 * 174.87170 * 1 2 3 28 28 H 0.97005 * 119.99756 * 355.18772 * 7 6 4 29 29 H 1.09003 * 109.46985 * 206.73905 * 15 14 12 30 30 H 1.09000 * 109.46770 * 326.73399 * 15 14 12 31 31 H 0.96701 * 117.00046 * 180.02562 * 18 16 15 32 32 H 1.08994 * 109.54447 * 355.81608 * 19 14 12 33 33 H 1.08997 * 109.51847 * 303.05705 * 20 19 14 34 34 H 1.08997 * 109.51968 * 63.24645 * 20 19 14 35 35 H 1.08997 * 109.48636 * 297.62446 * 21 20 19 36 36 H 1.08998 * 109.47986 * 177.58903 * 21 20 19 37 37 H 1.08997 * 109.48624 * 301.17254 * 23 22 21 38 38 H 1.09007 * 109.48613 * 181.14637 * 23 22 21 39 39 H 1.08999 * 109.52275 * 182.47825 * 24 23 22 40 40 H 1.09004 * 109.52421 * 62.29093 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.5872 -1.6317 1.1334 6 6 1.7835 -0.1838 2.4803 7 7 1.9302 -0.9335 3.5508 8 14 1.2303 1.5921 2.6525 9 1 2.4197 2.4690 2.7995 10 1 0.4667 1.9922 1.4433 11 1 0.3647 1.7269 3.8517 12 6 2.0323 -0.7104 -1.2303 13 8 2.3666 -1.8745 -1.1645 14 7 2.1101 -0.0524 -2.4039 15 6 2.5028 -0.7681 -3.6204 16 6 1.2837 -1.3857 -4.2556 17 8 0.1982 -1.2424 -3.7448 18 8 1.4039 -2.0951 -5.3887 19 6 1.8020 1.3786 -2.4631 20 6 0.7056 1.6241 -3.5045 21 6 0.4460 3.1286 -3.6157 22 8 1.6609 3.7959 -3.9637 23 6 2.7073 3.6410 -3.0029 24 6 3.0578 2.1570 -2.8670 25 1 -0.3634 0.4322 0.9324 26 1 -0.3634 0.5913 -0.8404 27 1 -0.3634 -1.0235 -0.0919 28 1 2.1454 -1.8748 3.4579 29 1 2.9629 -0.0702 -4.3200 30 1 3.2167 -1.5516 -3.3665 31 1 0.5938 -2.4717 -5.7589 32 1 1.4607 1.7189 -1.4855 33 1 1.0285 1.2376 -4.4712 34 1 -0.2094 1.1183 -3.1961 35 1 0.0845 3.5069 -2.6595 36 1 -0.3030 3.3123 -4.3860 37 1 2.3755 4.0259 -2.0387 38 1 3.5875 4.1937 -3.3316 39 1 3.8251 2.0324 -2.1029 40 1 3.4282 1.7813 -3.8209 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:17 Heat of formation + Delta-G solvation = -198.382359 kcal Electronic energy + Delta-G solvation = -24570.209371 eV Core-core repulsion = 20963.076421 eV Total energy + Delta-G solvation = -3607.132949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99589 -40.66438 -39.84304 -37.29835 -36.71690 -35.95183 -33.35612 -32.93784 -32.04524 -29.71465 -26.91147 -25.74539 -24.52081 -24.49272 -22.64701 -21.38272 -20.19108 -19.34748 -19.21080 -18.32659 -17.92592 -17.32423 -16.86938 -16.71430 -16.48427 -15.92402 -15.63347 -15.50594 -15.19596 -14.88220 -14.60679 -14.36093 -14.14083 -13.81717 -13.43585 -13.32665 -13.25688 -13.02879 -12.55927 -12.48499 -12.40874 -12.33022 -12.11143 -12.04215 -11.64522 -11.43065 -11.35644 -11.01407 -10.69707 -10.52170 -10.46847 -9.89057 -8.80222 -6.41016 1.13494 1.45059 1.48282 1.56263 1.71519 1.80673 2.32946 2.53349 3.00335 3.04494 3.56600 3.64611 3.80668 4.00812 4.04224 4.12927 4.25781 4.28281 4.31482 4.36965 4.47412 4.58268 4.62420 4.71999 4.76761 4.84756 4.87617 4.97917 5.07446 5.15270 5.17922 5.37921 5.41572 5.56111 5.77368 6.00802 6.28432 6.31926 6.54609 6.92582 7.22584 7.39678 8.58828 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014796 B = 0.007370 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.944064 B = 3798.035657 C = 5000.723959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.005 3.995 3 H 0.070 0.930 4 C -0.600 4.600 5 H 0.012 0.988 6 C -0.020 4.020 7 N -0.936 5.936 8 Si 1.081 2.919 9 H -0.263 1.263 10 H -0.222 1.222 11 H -0.287 1.287 12 C 0.534 3.466 13 O -0.584 6.584 14 N -0.595 5.595 15 C 0.116 3.884 16 C 0.463 3.537 17 O -0.535 6.535 18 O -0.509 6.509 19 C 0.123 3.877 20 C -0.154 4.154 21 C 0.065 3.935 22 O -0.393 6.393 23 C 0.063 3.937 24 C -0.164 4.164 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.022 0.978 28 H 0.248 0.752 29 H 0.158 0.842 30 H 0.113 0.887 31 H 0.426 0.574 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.119 0.881 39 H 0.081 0.919 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 12.129 -20.290 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.017 4.017 3 H 0.088 0.912 4 C -0.638 4.638 5 H 0.030 0.970 6 C -0.217 4.217 7 N -0.571 5.571 8 Si 0.899 3.101 9 H -0.189 1.189 10 H -0.145 1.145 11 H -0.213 1.213 12 C 0.326 3.674 13 O -0.463 6.463 14 N -0.328 5.328 15 C -0.008 4.008 16 C 0.304 3.696 17 O -0.424 6.424 18 O -0.322 6.322 19 C 0.021 3.979 20 C -0.192 4.192 21 C -0.012 4.012 22 O -0.312 6.312 23 C -0.014 4.014 24 C -0.203 4.203 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.176 0.824 30 H 0.131 0.869 31 H 0.288 0.712 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.137 0.863 39 H 0.100 0.900 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.239 12.940 -19.031 23.046 hybrid contribution -0.054 -3.005 -0.540 3.054 sum -1.293 9.934 -19.571 21.986 Atomic orbital electron populations 1.21966 0.94982 1.00040 1.01575 1.19176 0.94844 0.97275 0.90376 0.91195 1.22005 1.39121 1.10007 0.92659 0.97002 1.27531 0.93453 1.09588 0.91145 1.70936 1.46597 1.07346 1.32186 0.83764 0.78255 0.69961 0.78132 1.18852 1.14451 1.21282 1.21389 0.74599 0.86366 0.85074 1.90542 1.49949 1.19781 1.85999 1.47886 1.68900 1.10111 1.05876 1.20953 0.92286 0.99577 0.88012 1.24308 0.91631 0.75348 0.78301 1.90715 1.30435 1.58408 1.62863 1.84470 1.44733 1.64084 1.38919 1.21636 0.96455 0.78355 1.01460 1.22536 0.99085 0.98692 0.98916 1.22651 0.87046 0.89144 1.02340 1.87916 1.22536 1.73311 1.47424 1.22705 0.91496 0.93971 0.93254 1.22642 0.97115 0.96853 1.03649 0.91867 0.91538 0.95917 0.94296 0.82429 0.86912 0.71241 0.88404 0.91203 0.91061 0.91883 0.87070 0.92019 0.86318 0.89990 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.34 71.98 0.60 -4.88 16 2 C 0.00 0.23 1.32 -12.29 -0.02 0.22 16 3 H 0.07 2.87 5.00 -2.39 -0.01 2.85 16 4 C -0.60 -35.81 8.65 25.60 0.22 -35.59 16 5 H 0.01 0.82 7.18 -2.91 -0.02 0.80 16 6 C -0.02 -1.18 5.32 84.66 0.45 -0.73 16 7 N -0.94 -60.24 13.70 21.45 0.29 -59.94 16 8 Si 1.08 46.64 26.18 68.60 1.80 48.43 16 9 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 10 H -0.22 -7.74 5.52 99.48 0.55 -7.19 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.53 24.19 6.71 87.65 0.59 24.78 16 13 O -0.58 -31.96 15.33 -3.05 -0.05 -32.01 16 14 N -0.60 -19.31 1.94 -801.47 -1.56 -20.86 16 15 C 0.12 3.06 5.21 85.63 0.45 3.50 16 16 C 0.46 12.71 7.38 71.24 0.53 13.24 16 17 O -0.53 -18.44 15.46 21.96 0.34 -18.10 16 18 O -0.51 -10.08 13.42 -51.35 -0.69 -10.77 16 19 C 0.12 3.11 2.19 45.11 0.10 3.21 16 20 C -0.15 -3.35 4.30 30.69 0.13 -3.21 16 21 C 0.07 1.14 6.84 72.01 0.49 1.63 16 22 O -0.39 -7.39 10.77 -148.98 -1.60 -8.99 16 23 C 0.06 1.00 6.84 72.01 0.49 1.49 16 24 C -0.16 -3.11 5.51 30.68 0.17 -2.94 16 25 H 0.06 2.63 5.00 -2.39 -0.01 2.62 16 26 H 0.07 2.34 7.51 -2.39 -0.02 2.32 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.25 16.63 8.73 -92.70 -0.81 15.83 16 29 H 0.16 2.69 6.53 -2.39 -0.02 2.68 16 30 H 0.11 3.25 7.46 -2.39 -0.02 3.23 16 31 H 0.43 4.96 9.10 -74.06 -0.67 4.28 16 32 H 0.10 2.68 4.93 -2.39 -0.01 2.67 16 33 H 0.07 1.45 6.84 -2.39 -0.02 1.44 16 34 H 0.07 1.84 7.39 -2.39 -0.02 1.83 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 1.41 6.75 -2.38 -0.02 1.39 16 Total: -1.00 -83.82 316.41 2.94 -80.88 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.21 Total: 20.65 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.20 Total: 0.71 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -1.26 Total: -80.80 kcal Atomic # 8 Polarization: -67.87 SS G_CDS: -2.00 Total: -69.87 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.80 Total: 48.43 kcal Total: -83.82 2.94 -80.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.499 kcal (2) G-P(sol) polarization free energy of solvation -83.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds