Wall clock time and date at job start Tue Mar 31 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47035 * 2 1 4 4 C 1.50698 * 109.47632 * 239.99507 * 2 1 3 5 5 H 1.07998 * 120.00180 * 246.40575 * 4 2 1 6 6 C 1.37877 * 119.99791 * 66.39754 * 4 2 1 7 7 N 1.31513 * 120.00146 * 189.13285 * 6 4 2 8 8 Si 1.86804 * 120.00244 * 9.12865 * 6 4 2 9 9 H 1.48489 * 109.47113 * 179.97438 * 8 6 4 10 10 H 1.48509 * 109.46816 * 60.00102 * 8 6 4 11 11 H 1.48503 * 109.47209 * 300.00275 * 8 6 4 12 12 C 1.50697 * 109.46927 * 119.99332 * 2 1 3 13 13 O 1.20831 * 120.00214 * 120.00430 * 12 2 1 14 14 O 1.34237 * 120.00381 * 300.00056 * 12 2 1 15 15 C 1.45193 * 117.00085 * 179.97438 * 14 12 2 16 16 H 1.09001 * 110.88156 * 327.61297 * 15 14 12 17 17 C 1.54904 * 110.98993 * 91.45842 * 15 14 12 18 18 N 1.47850 * 104.79639 * 155.15869 * 17 15 14 19 19 C 1.46901 * 110.99747 * 213.62984 * 18 17 15 20 20 C 1.47433 * 108.56740 * 335.90435 * 18 17 15 21 21 C 1.53003 * 109.89002 * 120.39460 * 20 18 17 22 22 C 1.50703 * 109.88780 * 241.58443 * 20 18 17 23 23 O 1.20828 * 119.99862 * 227.34966 * 22 20 18 24 24 O 1.34228 * 119.99939 * 47.34934 * 22 20 18 25 25 C 1.54316 * 107.23496 * 0.98878 * 20 18 17 26 26 H 1.09004 * 109.46888 * 183.84243 * 1 2 3 27 27 H 1.08994 * 109.47624 * 303.84025 * 1 2 3 28 28 H 1.09000 * 109.47032 * 63.84092 * 1 2 3 29 29 H 0.97008 * 119.99769 * 354.85349 * 7 6 4 30 30 H 1.09005 * 110.37586 * 273.98647 * 17 15 14 31 31 H 1.09001 * 110.37675 * 36.21672 * 17 15 14 32 32 H 1.09001 * 109.47107 * 50.72990 * 19 18 17 33 33 H 1.08998 * 109.46703 * 170.72215 * 19 18 17 34 34 H 1.08996 * 109.47845 * 290.72366 * 19 18 17 35 35 H 1.09006 * 109.46873 * 61.45209 * 21 20 18 36 36 H 1.09000 * 109.47214 * 181.44908 * 21 20 18 37 37 H 1.08997 * 109.46798 * 301.45461 * 21 20 18 38 38 H 0.96705 * 116.99500 * 180.02562 * 24 22 20 39 39 H 1.08999 * 110.70504 * 263.90203 * 25 20 18 40 40 H 1.08996 * 110.70686 * 140.66843 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5654 -1.6449 -1.1345 6 6 1.8115 -0.1676 -2.4784 7 7 2.0869 -0.8668 -3.5577 8 14 1.1209 1.5609 -2.6363 9 1 0.9784 1.9076 -4.0730 10 1 2.0442 2.5242 -1.9843 11 1 -0.2080 1.6251 -1.9767 12 6 2.0322 -0.7103 1.2305 13 8 2.7270 -1.6927 1.1198 14 8 1.7080 -0.2516 2.4497 15 6 2.2266 -0.9860 3.5898 16 1 2.3096 -2.0487 3.3622 17 6 3.5890 -0.4088 4.0485 18 7 3.6951 -0.7802 5.4756 19 6 4.4090 0.2536 6.2369 20 6 2.3364 -0.9860 6.0095 21 6 2.1944 -2.4161 6.5345 22 6 2.0662 -0.0008 7.1174 23 8 1.5867 -0.3801 8.1596 24 8 2.3581 1.2982 6.9463 25 6 1.3483 -0.7530 4.8472 26 1 -0.3633 -1.0254 0.0689 27 1 -0.3634 0.5722 0.8535 28 1 -0.3633 0.4531 -0.9224 29 1 2.5144 -1.7339 -3.4779 30 1 4.4025 -0.8572 3.4781 31 1 3.5995 0.6752 3.9349 32 1 3.9671 1.2281 6.0291 33 1 4.3307 0.0390 7.3027 34 1 5.4589 0.2608 5.9439 35 1 2.9046 -2.5776 7.3456 36 1 1.1803 -2.5687 6.9038 37 1 2.3974 -3.1209 5.7282 38 1 2.1674 1.8919 7.6854 39 1 0.9650 0.2672 4.8660 40 1 0.5313 -1.4735 4.8856 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221523.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:29 Heat of formation + Delta-G solvation = -159.324523 kcal Electronic energy + Delta-G solvation = -23626.120160 eV Core-core repulsion = 20020.680885 eV Total energy + Delta-G solvation = -3605.439275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50519 -39.92022 -38.43465 -36.65078 -35.77926 -34.00308 -32.47183 -31.45459 -30.68769 -26.91183 -25.50495 -24.92304 -23.95506 -23.36208 -21.29070 -20.06681 -19.75514 -18.50094 -17.53980 -17.25240 -16.76901 -16.18513 -15.87193 -15.46638 -15.04547 -14.78475 -14.18402 -13.94012 -13.84344 -13.34129 -13.06200 -13.00433 -12.74214 -12.55112 -12.26453 -12.10453 -11.89506 -11.87551 -11.70448 -11.53684 -11.42891 -11.23497 -10.95181 -10.68990 -10.57963 -10.25826 -10.18453 -9.74805 -9.28547 -8.82265 -8.78808 -8.43287 -6.54259 -4.17738 1.72862 2.54856 3.05459 3.10959 3.28964 3.35241 3.53071 3.67917 4.15395 4.26631 4.40570 4.46679 4.86772 4.95269 4.99433 5.10038 5.20843 5.29643 5.43387 5.47514 5.54165 5.58080 5.62999 5.74555 5.84859 5.92635 5.96935 6.12827 6.15395 6.38151 6.42038 6.47909 6.57471 6.79475 7.01911 7.16061 7.49052 7.72343 8.36505 8.64593 8.88404 9.53395 10.88417 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031782 B = 0.003889 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.800211 B = 7198.664904 C = 7360.494605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.030 3.970 3 H 0.058 0.942 4 C -0.594 4.594 5 H 0.076 0.924 6 C 0.031 3.969 7 N -0.904 5.904 8 Si 1.042 2.958 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.472 3.528 13 O -0.502 6.502 14 O -0.356 6.356 15 C 0.081 3.919 16 H 0.101 0.899 17 C 0.025 3.975 18 N -0.506 5.506 19 C 0.004 3.996 20 C 0.108 3.892 21 C -0.120 4.120 22 C 0.477 3.523 23 O -0.508 6.508 24 O -0.508 6.508 25 C -0.126 4.126 26 H 0.049 0.951 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.270 0.730 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.402 0.598 39 H 0.091 0.909 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 4.577 20.815 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.010 3.990 3 H 0.075 0.925 4 C -0.632 4.632 5 H 0.094 0.906 6 C -0.174 4.174 7 N -0.538 5.538 8 Si 0.871 3.129 9 H -0.209 1.209 10 H -0.207 1.207 11 H -0.193 1.193 12 C 0.315 3.685 13 O -0.387 6.387 14 O -0.273 6.273 15 C 0.025 3.975 16 H 0.119 0.881 17 C -0.103 4.103 18 N -0.232 5.232 19 C -0.143 4.143 20 C 0.017 3.983 21 C -0.177 4.177 22 C 0.317 3.683 23 O -0.394 6.394 24 O -0.321 6.321 25 C -0.164 4.164 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.262 0.738 39 H 0.110 0.890 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.414 4.546 19.707 20.229 hybrid contribution 0.213 -0.138 1.701 1.720 sum -0.201 4.408 21.409 21.859 Atomic orbital electron populations 1.22324 0.96118 1.01343 1.01516 1.19103 0.94389 0.97212 0.88300 0.92454 1.22027 1.41244 1.10383 0.89560 0.90582 1.25779 0.95706 1.04249 0.91623 1.70828 1.38607 1.14223 1.30102 0.84166 0.77142 0.75183 0.76445 1.20878 1.20711 1.19305 1.24826 0.76832 0.83276 0.83560 1.90537 1.35531 1.26213 1.86376 1.86665 1.70012 1.55478 1.15172 1.23525 0.92013 0.97817 0.84176 0.88068 1.23554 0.98401 1.00568 0.87784 1.63861 1.12458 1.44093 1.02823 1.23096 0.99720 0.94144 0.97339 1.22016 0.90789 0.94321 0.91173 1.21690 1.02712 0.91445 1.01880 1.23924 0.73608 0.82071 0.88660 1.90716 1.40490 1.79512 1.28697 1.84912 1.77962 1.20069 1.49132 1.22893 0.97625 1.04744 0.91108 0.93204 0.94348 0.90819 0.91969 0.88454 0.91493 0.91166 0.92118 0.90696 0.91434 0.91096 0.90233 0.73834 0.88995 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 8.76 37.16 0.33 -2.89 16 2 C 0.03 0.69 2.32 -92.93 -0.22 0.48 16 3 H 0.06 1.28 6.94 -51.93 -0.36 0.92 16 4 C -0.59 -16.67 8.68 -34.44 -0.30 -16.97 16 5 H 0.08 2.40 7.02 -52.49 -0.37 2.03 16 6 C 0.03 0.88 5.41 -17.82 -0.10 0.79 16 7 N -0.90 -27.40 13.70 55.43 0.76 -26.64 16 8 Si 1.04 23.68 26.16 -169.99 -4.45 19.23 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.27 -5.39 5.32 56.52 0.30 -5.09 16 12 C 0.47 10.37 7.25 36.00 0.26 10.63 16 13 O -0.50 -12.34 14.77 -18.75 -0.28 -12.62 16 14 O -0.36 -6.40 9.97 -39.28 -0.39 -6.79 16 15 C 0.08 1.20 3.30 -24.59 -0.08 1.12 16 16 H 0.10 1.60 7.33 -51.93 -0.38 1.22 16 17 C 0.02 0.33 6.47 -2.30 -0.01 0.31 16 18 N -0.51 -5.88 5.07 -225.25 -1.14 -7.02 16 19 C 0.00 0.04 8.12 60.07 0.49 0.53 16 20 C 0.11 1.20 1.10 -131.77 -0.15 1.05 16 21 C -0.12 -1.22 8.08 37.16 0.30 -0.92 16 22 C 0.48 5.11 5.32 36.01 0.19 5.30 16 23 O -0.51 -6.57 16.80 -18.75 -0.31 -6.88 16 24 O -0.51 -4.13 9.83 -39.25 -0.39 -4.52 16 25 C -0.13 -1.47 5.75 -24.91 -0.14 -1.61 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.55 4.13 -51.93 -0.21 1.33 16 29 H 0.27 8.25 8.72 -40.82 -0.36 7.90 16 30 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.07 0.88 7.63 -51.93 -0.40 0.48 16 32 H 0.07 0.66 5.51 -51.93 -0.29 0.38 16 33 H 0.06 0.56 6.89 -51.93 -0.36 0.20 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.68 8.01 -51.93 -0.42 0.26 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.40 1.57 9.10 45.56 0.41 1.98 16 39 H 0.09 1.06 7.84 -51.93 -0.41 0.65 16 40 H 0.10 1.00 7.83 -51.93 -0.41 0.59 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -32.99 322.17 -5.74 -38.74 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.97 Total: 3.83 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 0.57 Total: -2.18 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: -0.38 Total: -33.66 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.37 Total: -30.81 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -4.45 Total: 19.23 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.99 -5.74 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221523.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.588 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds