Wall clock time and date at job start Tue Mar 31 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47035 * 2 1 4 4 C 1.50698 * 109.47632 * 239.99507 * 2 1 3 5 5 H 1.07998 * 120.00180 * 246.40575 * 4 2 1 6 6 C 1.37877 * 119.99791 * 66.39754 * 4 2 1 7 7 N 1.31513 * 120.00146 * 189.13285 * 6 4 2 8 8 Si 1.86804 * 120.00244 * 9.12865 * 6 4 2 9 9 H 1.48489 * 109.47113 * 179.97438 * 8 6 4 10 10 H 1.48509 * 109.46816 * 60.00102 * 8 6 4 11 11 H 1.48503 * 109.47209 * 300.00275 * 8 6 4 12 12 C 1.50697 * 109.46927 * 119.99332 * 2 1 3 13 13 O 1.20831 * 120.00214 * 120.00430 * 12 2 1 14 14 O 1.34237 * 120.00381 * 300.00056 * 12 2 1 15 15 C 1.45193 * 117.00085 * 179.97438 * 14 12 2 16 16 H 1.09001 * 110.88156 * 327.61297 * 15 14 12 17 17 C 1.54904 * 110.98993 * 91.45842 * 15 14 12 18 18 N 1.47850 * 104.79639 * 155.15869 * 17 15 14 19 19 C 1.46901 * 110.99747 * 213.62984 * 18 17 15 20 20 C 1.47433 * 108.56740 * 335.90435 * 18 17 15 21 21 C 1.53003 * 109.89002 * 120.39460 * 20 18 17 22 22 C 1.50703 * 109.88780 * 241.58443 * 20 18 17 23 23 O 1.20828 * 119.99862 * 227.34966 * 22 20 18 24 24 O 1.34228 * 119.99939 * 47.34934 * 22 20 18 25 25 C 1.54316 * 107.23496 * 0.98878 * 20 18 17 26 26 H 1.09004 * 109.46888 * 183.84243 * 1 2 3 27 27 H 1.08994 * 109.47624 * 303.84025 * 1 2 3 28 28 H 1.09000 * 109.47032 * 63.84092 * 1 2 3 29 29 H 0.97008 * 119.99769 * 354.85349 * 7 6 4 30 30 H 1.09005 * 110.37586 * 273.98647 * 17 15 14 31 31 H 1.09001 * 110.37675 * 36.21672 * 17 15 14 32 32 H 1.09001 * 109.47107 * 50.72990 * 19 18 17 33 33 H 1.08998 * 109.46703 * 170.72215 * 19 18 17 34 34 H 1.08996 * 109.47845 * 290.72366 * 19 18 17 35 35 H 1.09006 * 109.46873 * 61.45209 * 21 20 18 36 36 H 1.09000 * 109.47214 * 181.44908 * 21 20 18 37 37 H 1.08997 * 109.46798 * 301.45461 * 21 20 18 38 38 H 0.96705 * 116.99500 * 180.02562 * 24 22 20 39 39 H 1.08999 * 110.70504 * 263.90203 * 25 20 18 40 40 H 1.08996 * 110.70686 * 140.66843 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5654 -1.6449 -1.1345 6 6 1.8115 -0.1676 -2.4784 7 7 2.0869 -0.8668 -3.5577 8 14 1.1209 1.5609 -2.6363 9 1 0.9784 1.9076 -4.0730 10 1 2.0442 2.5242 -1.9843 11 1 -0.2080 1.6251 -1.9767 12 6 2.0322 -0.7103 1.2305 13 8 2.7270 -1.6927 1.1198 14 8 1.7080 -0.2516 2.4497 15 6 2.2266 -0.9860 3.5898 16 1 2.3096 -2.0487 3.3622 17 6 3.5890 -0.4088 4.0485 18 7 3.6951 -0.7802 5.4756 19 6 4.4090 0.2536 6.2369 20 6 2.3364 -0.9860 6.0095 21 6 2.1944 -2.4161 6.5345 22 6 2.0662 -0.0008 7.1174 23 8 1.5867 -0.3801 8.1596 24 8 2.3581 1.2982 6.9463 25 6 1.3483 -0.7530 4.8472 26 1 -0.3633 -1.0254 0.0689 27 1 -0.3634 0.5722 0.8535 28 1 -0.3633 0.4531 -0.9224 29 1 2.5144 -1.7339 -3.4779 30 1 4.4025 -0.8572 3.4781 31 1 3.5995 0.6752 3.9349 32 1 3.9671 1.2281 6.0291 33 1 4.3307 0.0390 7.3027 34 1 5.4589 0.2608 5.9439 35 1 2.9046 -2.5776 7.3456 36 1 1.1803 -2.5687 6.9038 37 1 2.3974 -3.1209 5.7282 38 1 2.1674 1.8919 7.6854 39 1 0.9650 0.2672 4.8660 40 1 0.5313 -1.4735 4.8856 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221523.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:29 Heat of formation + Delta-G solvation = -184.026676 kcal Electronic energy + Delta-G solvation = -23627.191326 eV Core-core repulsion = 20020.680885 eV Total energy + Delta-G solvation = -3606.510440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.41541 -41.42300 -39.51516 -37.42785 -37.31286 -35.97273 -33.47712 -33.25332 -31.87287 -27.80201 -26.84985 -26.46679 -25.28736 -24.55766 -22.60018 -21.45987 -20.84281 -19.57019 -19.30087 -18.66657 -17.99346 -17.45635 -17.06374 -16.62693 -16.26699 -16.02670 -15.56691 -15.11960 -14.89744 -14.73322 -14.42971 -14.14763 -14.05037 -13.87156 -13.50576 -13.42666 -13.19251 -13.08955 -12.95074 -12.71288 -12.48924 -12.38250 -12.27087 -12.03362 -12.00195 -11.58570 -11.55259 -11.47419 -11.09908 -10.88725 -10.47801 -9.68839 -8.80698 -6.45182 0.87998 1.32141 1.50530 1.59960 1.60793 1.78187 1.92226 2.53452 2.69860 3.07675 3.18436 3.26528 3.58740 3.72317 3.89186 4.13758 4.16981 4.25925 4.40575 4.41919 4.55490 4.61126 4.63863 4.66293 4.72167 4.75619 4.82424 4.89775 5.01280 5.09852 5.14139 5.35540 5.44620 5.49262 5.57078 5.70595 5.74510 6.02276 6.52665 6.83014 6.94459 7.37372 8.61386 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031782 B = 0.003889 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.800211 B = 7198.664904 C = 7360.494605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.020 3.980 3 H 0.080 0.920 4 C -0.602 4.602 5 H 0.021 0.979 6 C -0.020 4.020 7 N -0.937 5.937 8 Si 1.081 2.919 9 H -0.292 1.292 10 H -0.256 1.256 11 H -0.218 1.218 12 C 0.478 3.522 13 O -0.540 6.540 14 O -0.342 6.342 15 C 0.072 3.928 16 H 0.086 0.914 17 C 0.031 3.969 18 N -0.511 5.511 19 C 0.004 3.996 20 C 0.105 3.895 21 C -0.119 4.119 22 C 0.486 3.514 23 O -0.531 6.531 24 O -0.502 6.502 25 C -0.116 4.116 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.249 0.751 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.423 0.577 39 H 0.100 0.900 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 7.282 23.096 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.001 3.999 3 H 0.097 0.903 4 C -0.640 4.640 5 H 0.040 0.960 6 C -0.217 4.217 7 N -0.573 5.573 8 Si 0.900 3.100 9 H -0.218 1.218 10 H -0.180 1.180 11 H -0.143 1.143 12 C 0.322 3.678 13 O -0.428 6.428 14 O -0.259 6.259 15 C 0.015 3.985 16 H 0.104 0.896 17 C -0.097 4.097 18 N -0.238 5.238 19 C -0.143 4.143 20 C 0.015 3.985 21 C -0.177 4.177 22 C 0.328 3.672 23 O -0.420 6.420 24 O -0.317 6.317 25 C -0.154 4.154 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.286 0.714 39 H 0.119 0.881 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.883 7.265 22.052 23.294 hybrid contribution 0.763 -1.038 1.105 1.697 sum -1.121 6.226 23.157 24.005 Atomic orbital electron populations 1.22217 0.93370 1.01619 1.03332 1.19076 0.96452 0.97469 0.86920 0.90269 1.22098 1.40640 1.08799 0.92453 0.96025 1.27495 0.95277 1.07970 0.90952 1.70982 1.40897 1.13908 1.31515 0.83780 0.79437 0.69992 0.76775 1.21831 1.18014 1.14258 1.24517 0.76063 0.82475 0.84710 1.90536 1.37253 1.27890 1.87152 1.86587 1.69523 1.55180 1.14577 1.23799 0.93943 0.96804 0.83906 0.89620 1.23411 0.96875 1.00560 0.88859 1.63853 1.13058 1.44970 1.01925 1.23157 0.99868 0.93901 0.97359 1.22036 0.90182 0.95092 0.91225 1.21692 1.03174 0.91048 1.01753 1.23647 0.73028 0.82657 0.87870 1.90720 1.41695 1.80062 1.29480 1.84838 1.77341 1.19268 1.50235 1.22889 0.97574 1.05730 0.89187 0.94191 0.90236 0.90749 0.94204 0.90197 0.90867 0.90443 0.91447 0.90168 0.91532 0.90331 0.90439 0.71364 0.88114 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 8.76 71.98 0.63 -5.02 16 2 C 0.02 0.92 2.32 -12.29 -0.03 0.90 16 3 H 0.08 3.28 6.94 -2.39 -0.02 3.26 16 4 C -0.60 -34.61 8.68 25.60 0.22 -34.38 16 5 H 0.02 1.44 7.02 -2.91 -0.02 1.42 16 6 C -0.02 -1.14 5.41 84.65 0.46 -0.68 16 7 N -0.94 -58.91 13.70 21.45 0.29 -58.62 16 8 Si 1.08 45.62 26.16 68.60 1.79 47.42 16 9 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 10 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 11 H -0.22 -7.58 5.32 99.48 0.53 -7.05 16 12 C 0.48 20.81 7.25 71.23 0.52 21.33 16 13 O -0.54 -27.46 14.77 21.95 0.32 -27.13 16 14 O -0.34 -11.67 9.97 -51.49 -0.51 -12.18 16 15 C 0.07 2.03 3.30 31.98 0.11 2.13 16 16 H 0.09 2.73 7.33 -2.39 -0.02 2.71 16 17 C 0.03 0.79 6.47 86.77 0.56 1.36 16 18 N -0.51 -11.02 5.07 -866.55 -4.39 -15.42 16 19 C 0.00 0.07 8.12 127.69 1.04 1.10 16 20 C 0.11 2.11 1.10 3.13 0.00 2.11 16 21 C -0.12 -2.24 8.08 71.98 0.58 -1.66 16 22 C 0.49 9.04 5.32 71.24 0.38 9.42 16 23 O -0.53 -12.42 16.80 21.96 0.37 -12.05 16 24 O -0.50 -6.40 9.83 -51.39 -0.51 -6.91 16 25 C -0.12 -2.42 5.75 31.78 0.18 -2.24 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.07 2.81 4.13 -2.39 -0.01 2.80 16 29 H 0.25 16.20 8.72 -92.70 -0.81 15.39 16 30 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.07 1.78 7.63 -2.39 -0.02 1.76 16 32 H 0.08 1.22 5.51 -2.39 -0.01 1.21 16 33 H 0.07 1.07 6.89 -2.39 -0.02 1.06 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.08 1.36 8.01 -2.39 -0.02 1.34 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.42 1.71 9.10 -74.05 -0.67 1.04 16 39 H 0.10 1.96 7.84 -2.39 -0.02 1.94 16 40 H 0.11 2.00 7.83 -2.39 -0.02 1.98 16 Total: -1.00 -74.72 322.17 2.19 -72.53 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.18 Total: 17.99 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 4.65 Total: -5.64 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -4.10 Total: -74.04 kcal Atomic # 8 Polarization: -57.94 SS G_CDS: -0.33 Total: -58.27 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.79 Total: 47.42 kcal Total: -74.72 2.19 -72.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221523.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.499 kcal (2) G-P(sol) polarization free energy of solvation -74.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds