Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50696 * 109.47197 * 239.99428 * 2 1 3 5 5 H 1.08002 * 120.00318 * 240.00361 * 4 2 1 6 6 C 1.37879 * 119.99922 * 60.00151 * 4 2 1 7 7 N 1.31513 * 119.99824 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99920 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46763 * 60.00502 * 8 6 4 10 10 H 1.48506 * 109.46865 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47267 * 300.00432 * 8 6 4 12 12 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 13 13 O 1.20830 * 119.99594 * 120.00100 * 12 2 1 14 14 O 1.34222 * 120.00024 * 299.72383 * 12 2 1 15 15 C 1.45201 * 116.99867 * 180.02562 * 14 12 2 16 16 H 1.09000 * 110.64593 * 328.29936 * 15 14 12 17 17 C 1.54933 * 110.72735 * 91.45243 * 15 14 12 18 18 N 1.48530 * 103.23045 * 155.77105 * 17 15 14 19 19 C 1.46898 * 111.00223 * 200.28377 * 18 17 15 20 20 C 1.47906 * 105.82229 * 320.79674 * 18 17 15 21 21 C 1.53000 * 109.91774 * 265.97551 * 20 18 17 22 22 C 1.50701 * 109.91894 * 144.87763 * 20 18 17 23 23 O 1.20829 * 119.99993 * 216.45714 * 22 20 18 24 24 O 1.34229 * 119.99812 * 36.45520 * 22 20 18 25 25 C 1.53993 * 107.05400 * 25.32735 * 20 18 17 26 26 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 27 27 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 29 29 H 0.97005 * 119.99648 * 179.97438 * 7 6 4 30 30 H 1.08998 * 110.66881 * 274.21038 * 17 15 14 31 31 H 1.08999 * 110.66640 * 37.17096 * 17 15 14 32 32 H 1.08993 * 109.47203 * 60.12769 * 19 18 17 33 33 H 1.09000 * 109.47239 * 180.13144 * 19 18 17 34 34 H 1.09001 * 109.46898 * 300.12021 * 19 18 17 35 35 H 1.09001 * 109.46751 * 58.54539 * 21 20 18 36 36 H 1.08995 * 109.47175 * 178.53896 * 21 20 18 37 37 H 1.08995 * 109.47183 * 298.54629 * 21 20 18 38 38 H 0.96701 * 116.99709 * 179.97438 * 24 22 20 39 39 H 1.09001 * 110.30900 * 239.85622 * 25 20 18 40 40 H 1.09003 * 110.30814 * 117.69685 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 1.8279 -2.5202 -4.0079 10 1 1.8269 -0.4203 -5.2204 11 1 3.8075 -1.1194 -4.0075 12 6 2.0322 -0.7103 1.2306 13 8 2.7269 -1.6928 1.1198 14 8 1.7125 -0.2484 2.4496 15 6 2.2318 -0.9825 3.5897 16 1 2.3206 -2.0433 3.3557 17 6 3.5971 -0.4039 4.0387 18 7 3.6821 -0.8027 5.4670 19 6 4.6461 0.0363 6.1914 20 6 2.3182 -0.6360 6.0142 21 6 2.1797 0.7455 6.6570 22 6 2.0405 -1.7078 7.0365 23 8 0.9353 -2.1883 7.1231 24 8 3.0211 -2.1286 7.8509 25 6 1.3387 -0.7655 4.8329 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 0.7096 1.1616 -3.4845 30 1 4.4106 -0.8489 3.4659 31 1 3.6066 0.6814 3.9386 32 1 4.3314 1.0786 6.1397 33 1 4.6904 -0.2785 7.2340 34 1 5.6318 -0.0687 5.7381 35 1 2.3879 1.5147 5.9133 36 1 1.1649 0.8705 7.0345 37 1 2.8876 0.8355 7.4808 38 1 2.7950 -2.8176 8.4906 39 1 0.7543 0.1481 4.7241 40 1 0.6801 -1.6216 4.9797 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = -167.623553 kcal Electronic energy + Delta-G solvation = -23454.421625 eV Core-core repulsion = 19848.622477 eV Total energy + Delta-G solvation = -3605.799147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.15827 -39.74418 -38.58045 -36.32522 -35.68224 -33.90304 -31.95505 -31.44977 -30.41774 -26.45785 -25.99888 -25.21702 -23.84409 -23.09003 -21.17551 -19.85347 -19.67103 -18.17152 -17.27762 -16.90199 -16.17551 -15.96920 -15.71687 -15.12674 -15.03421 -14.77668 -14.38334 -13.96424 -13.72112 -13.28134 -12.97018 -12.79580 -12.69180 -12.36295 -12.09060 -12.02189 -11.69285 -11.66490 -11.56734 -11.50001 -11.04605 -10.86152 -10.71668 -10.68296 -10.65732 -10.34820 -10.07522 -10.00352 -9.14750 -9.07172 -8.80215 -8.45833 -6.11781 -4.17346 1.97954 2.79351 3.16005 3.25741 3.32440 3.35008 3.41029 3.85525 4.17427 4.39539 4.47573 4.54359 4.93290 4.98512 5.08145 5.18958 5.21698 5.23971 5.27854 5.36291 5.51412 5.70973 5.71885 5.76067 5.81487 5.95093 6.16373 6.29074 6.46760 6.64238 6.65200 6.84998 6.86977 7.19777 7.41740 7.72746 7.73285 7.92974 8.12534 8.81348 8.91740 9.48353 10.95555 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033502 B = 0.003629 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.582425 B = 7713.611356 C = 7861.940795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.064 0.936 4 C -0.514 4.514 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.465 3.535 13 O -0.513 6.513 14 O -0.355 6.355 15 C 0.081 3.919 16 H 0.097 0.903 17 C 0.020 3.980 18 N -0.499 5.499 19 C 0.011 3.989 20 C 0.101 3.899 21 C -0.168 4.168 22 C 0.506 3.494 23 O -0.515 6.515 24 O -0.503 6.503 25 C -0.115 4.115 26 H 0.096 0.904 27 H 0.031 0.969 28 H 0.023 0.977 29 H 0.264 0.736 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.405 0.595 39 H 0.099 0.901 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 0.965 19.664 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.082 0.918 4 C -0.552 4.552 5 H 0.093 0.907 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.309 3.691 13 O -0.399 6.399 14 O -0.273 6.273 15 C 0.025 3.975 16 H 0.115 0.885 17 C -0.107 4.107 18 N -0.225 5.225 19 C -0.138 4.138 20 C 0.010 3.990 21 C -0.226 4.226 22 C 0.347 3.653 23 O -0.402 6.402 24 O -0.313 6.313 25 C -0.152 4.152 26 H 0.114 0.886 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.263 0.737 39 H 0.118 0.882 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.575 0.409 19.306 19.639 hybrid contribution 0.032 -0.189 -0.366 0.413 sum 3.607 0.221 18.940 19.282 Atomic orbital electron populations 1.21740 0.95588 1.00109 1.01737 1.18764 0.94879 0.96921 0.85481 0.91829 1.21094 1.32010 1.13280 0.88773 0.90667 1.24930 0.94871 0.95003 0.99121 1.69870 1.36471 1.22768 1.23977 0.86434 0.79292 0.79703 0.81313 1.20067 1.21214 1.20071 1.25422 0.76532 0.83211 0.83942 1.90504 1.36203 1.26657 1.86515 1.86692 1.70135 1.55250 1.15234 1.23319 0.91873 0.97779 0.84552 0.88472 1.23675 0.98824 1.00003 0.88202 1.64722 1.03186 1.52010 1.02541 1.22664 0.96114 0.95174 0.99798 1.21512 0.92380 0.92304 0.92818 1.22423 1.03773 0.94449 1.01971 1.23080 0.81646 0.80980 0.79596 1.90723 1.24735 1.55577 1.69155 1.84589 1.43150 1.56018 1.47537 1.22563 0.96865 1.05888 0.89933 0.88551 0.94945 0.95778 0.92628 0.88367 0.91837 0.94187 0.90317 0.90766 0.90052 0.90784 0.90708 0.73684 0.88208 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.90 37.16 0.33 -2.81 16 2 C 0.06 1.47 2.74 -92.92 -0.25 1.21 16 3 H 0.06 1.64 8.14 -51.93 -0.42 1.21 16 4 C -0.51 -14.29 8.37 -34.44 -0.29 -14.57 16 5 H 0.08 2.18 6.76 -52.49 -0.35 1.82 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.62 11.32 55.43 0.63 -23.99 16 8 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 C 0.46 10.70 7.24 36.01 0.26 10.96 16 13 O -0.51 -12.83 14.74 -18.75 -0.28 -13.11 16 14 O -0.36 -6.85 9.89 -39.24 -0.39 -7.24 16 15 C 0.08 1.31 3.34 -24.87 -0.08 1.23 16 16 H 0.10 1.73 7.29 -51.93 -0.38 1.35 16 17 C 0.02 0.28 6.28 -1.90 -0.01 0.27 16 18 N -0.50 -5.93 4.97 -224.49 -1.12 -7.05 16 19 C 0.01 0.10 8.22 60.06 0.49 0.59 16 20 C 0.10 1.16 0.84 -131.68 -0.11 1.05 16 21 C -0.17 -1.47 6.94 37.16 0.26 -1.22 16 22 C 0.51 5.98 7.20 36.01 0.26 6.24 16 23 O -0.51 -7.40 16.38 -18.75 -0.31 -7.70 16 24 O -0.50 -4.55 12.46 -39.26 -0.49 -5.04 16 25 C -0.11 -1.53 5.84 -25.37 -0.15 -1.68 16 26 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.06 0.83 8.01 -51.93 -0.42 0.41 16 32 H 0.04 0.32 6.15 -51.93 -0.32 0.00 16 33 H 0.08 0.65 7.24 -51.93 -0.38 0.28 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.69 7.63 -51.93 -0.40 0.30 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.55 6.66 -51.93 -0.35 0.21 16 38 H 0.41 1.93 9.10 45.56 0.41 2.34 16 39 H 0.10 1.24 7.62 -51.93 -0.40 0.84 16 40 H 0.10 1.39 6.79 -51.93 -0.35 1.04 16 LS Contribution 328.31 15.07 4.95 4.95 Total: -1.00 -31.66 328.31 -6.32 -37.98 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -4.91 Total: 2.00 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 0.61 Total: 2.87 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: -0.49 Total: -31.04 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.46 Total: -33.10 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.66 -6.32 -37.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.646 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds