Wall clock time and date at job start Tue Mar 31 2020 06:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50696 * 109.47197 * 239.99428 * 2 1 3 5 5 H 1.08002 * 120.00318 * 240.00361 * 4 2 1 6 6 C 1.37879 * 119.99922 * 60.00151 * 4 2 1 7 7 N 1.31513 * 119.99824 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99920 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46763 * 60.00502 * 8 6 4 10 10 H 1.48506 * 109.46865 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47267 * 300.00432 * 8 6 4 12 12 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 13 13 O 1.20830 * 119.99594 * 120.00100 * 12 2 1 14 14 O 1.34222 * 120.00024 * 299.72383 * 12 2 1 15 15 C 1.45201 * 116.99867 * 180.02562 * 14 12 2 16 16 H 1.09000 * 110.64593 * 328.29936 * 15 14 12 17 17 C 1.54933 * 110.72735 * 91.45243 * 15 14 12 18 18 N 1.48530 * 103.23045 * 155.77105 * 17 15 14 19 19 C 1.46898 * 111.00223 * 200.28377 * 18 17 15 20 20 C 1.47906 * 105.82229 * 320.79674 * 18 17 15 21 21 C 1.53000 * 109.91774 * 265.97551 * 20 18 17 22 22 C 1.50701 * 109.91894 * 144.87763 * 20 18 17 23 23 O 1.20829 * 119.99993 * 216.45714 * 22 20 18 24 24 O 1.34229 * 119.99812 * 36.45520 * 22 20 18 25 25 C 1.53993 * 107.05400 * 25.32735 * 20 18 17 26 26 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 27 27 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 29 29 H 0.97005 * 119.99648 * 179.97438 * 7 6 4 30 30 H 1.08998 * 110.66881 * 274.21038 * 17 15 14 31 31 H 1.08999 * 110.66640 * 37.17096 * 17 15 14 32 32 H 1.08993 * 109.47203 * 60.12769 * 19 18 17 33 33 H 1.09000 * 109.47239 * 180.13144 * 19 18 17 34 34 H 1.09001 * 109.46898 * 300.12021 * 19 18 17 35 35 H 1.09001 * 109.46751 * 58.54539 * 21 20 18 36 36 H 1.08995 * 109.47175 * 178.53896 * 21 20 18 37 37 H 1.08995 * 109.47183 * 298.54629 * 21 20 18 38 38 H 0.96701 * 116.99709 * 179.97438 * 24 22 20 39 39 H 1.09001 * 110.30900 * 239.85622 * 25 20 18 40 40 H 1.09003 * 110.30814 * 117.69685 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 1.8279 -2.5202 -4.0079 10 1 1.8269 -0.4203 -5.2204 11 1 3.8075 -1.1194 -4.0075 12 6 2.0322 -0.7103 1.2306 13 8 2.7269 -1.6928 1.1198 14 8 1.7125 -0.2484 2.4496 15 6 2.2318 -0.9825 3.5897 16 1 2.3206 -2.0433 3.3557 17 6 3.5971 -0.4039 4.0387 18 7 3.6821 -0.8027 5.4670 19 6 4.6461 0.0363 6.1914 20 6 2.3182 -0.6360 6.0142 21 6 2.1797 0.7455 6.6570 22 6 2.0405 -1.7078 7.0365 23 8 0.9353 -2.1883 7.1231 24 8 3.0211 -2.1286 7.8509 25 6 1.3387 -0.7655 4.8329 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 0.7096 1.1616 -3.4845 30 1 4.4106 -0.8489 3.4659 31 1 3.6066 0.6814 3.9386 32 1 4.3314 1.0786 6.1397 33 1 4.6904 -0.2785 7.2340 34 1 5.6318 -0.0687 5.7381 35 1 2.3879 1.5147 5.9133 36 1 1.1649 0.8705 7.0345 37 1 2.8876 0.8355 7.4808 38 1 2.7950 -2.8176 8.4906 39 1 0.7543 0.1481 4.7241 40 1 0.6801 -1.6216 4.9797 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:31 Heat of formation + Delta-G solvation = -189.377965 kcal Electronic energy + Delta-G solvation = -23455.364967 eV Core-core repulsion = 19848.622477 eV Total energy + Delta-G solvation = -3606.742490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.17821 -41.27170 -39.70213 -37.34265 -37.16634 -35.92397 -33.07733 -32.69924 -32.07840 -27.36047 -27.25225 -26.93667 -25.33071 -24.30926 -22.55652 -21.47329 -20.62728 -19.08120 -18.65655 -18.31097 -18.04257 -17.52343 -16.87540 -16.72059 -16.28900 -15.93061 -15.58867 -15.15431 -14.89754 -14.63913 -14.29741 -14.20332 -13.75628 -13.58913 -13.36631 -13.25916 -12.97974 -12.82627 -12.75397 -12.62435 -12.57313 -12.52624 -12.50661 -12.28753 -12.04741 -11.83908 -11.63955 -11.44661 -11.11822 -11.02253 -10.52910 -9.69212 -8.19840 -6.32887 1.07592 1.40980 1.43266 1.45185 1.51991 1.71937 2.01215 2.42956 2.79930 3.10462 3.18774 3.41171 3.60872 3.84500 3.90017 4.22029 4.27329 4.33561 4.37567 4.51544 4.62765 4.65700 4.68558 4.71384 4.75171 4.85509 4.90032 5.01108 5.02949 5.09752 5.36817 5.44762 5.50264 5.61358 5.69821 5.79168 5.88704 6.10725 6.73150 6.97185 7.03058 7.35926 8.86345 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033502 B = 0.003629 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.582425 B = 7713.611356 C = 7861.940795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 H 0.055 0.945 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.473 3.527 13 O -0.539 6.539 14 O -0.348 6.348 15 C 0.071 3.929 16 H 0.074 0.926 17 C 0.029 3.971 18 N -0.507 5.507 19 C 0.008 3.992 20 C 0.101 3.899 21 C -0.164 4.164 22 C 0.510 3.490 23 O -0.546 6.546 24 O -0.495 6.495 25 C -0.109 4.109 26 H 0.078 0.922 27 H 0.026 0.974 28 H 0.050 0.950 29 H 0.268 0.732 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.425 0.575 39 H 0.112 0.888 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 1.674 21.006 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.032 3.968 3 H 0.072 0.928 4 C -0.578 4.578 5 H 0.074 0.926 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.319 3.681 13 O -0.428 6.428 14 O -0.264 6.264 15 C 0.016 3.984 16 H 0.092 0.908 17 C -0.099 4.099 18 N -0.233 5.233 19 C -0.139 4.139 20 C 0.009 3.991 21 C -0.222 4.222 22 C 0.352 3.648 23 O -0.436 6.436 24 O -0.307 6.307 25 C -0.147 4.147 26 H 0.097 0.903 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.286 0.714 39 H 0.130 0.870 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.038 1.129 20.694 21.114 hybrid contribution -0.082 -0.428 -0.663 0.793 sum 3.956 0.701 20.031 20.430 Atomic orbital electron populations 1.21576 0.94430 0.99830 1.02118 1.18685 0.95845 0.96252 0.85988 0.92771 1.21225 1.32715 1.13320 0.90530 0.92616 1.25606 0.94868 0.95629 1.01470 1.69946 1.36575 1.23308 1.24807 0.85557 0.78775 0.78638 0.78374 1.20065 1.19855 1.19857 1.24897 0.75958 0.82511 0.84773 1.90488 1.37365 1.27752 1.87178 1.86618 1.69865 1.55098 1.14863 1.23591 0.94343 0.96415 0.84097 0.90753 1.23516 0.96574 1.00287 0.89499 1.64707 1.03972 1.53141 1.01494 1.22777 0.95439 0.95670 1.00007 1.21521 0.91383 0.93995 0.92172 1.22439 1.04827 0.92445 1.02520 1.23082 0.81426 0.80597 0.79676 1.90720 1.26032 1.56646 1.70185 1.84531 1.42050 1.56581 1.47567 1.22532 0.96891 1.05998 0.89282 0.90330 0.95454 0.93090 0.92233 0.89762 0.90710 0.92610 0.89063 0.90476 0.89496 0.90157 0.88834 0.71362 0.87014 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.90 71.98 0.64 -5.07 16 2 C 0.05 2.61 2.74 -12.29 -0.03 2.58 16 3 H 0.05 2.84 8.14 -2.39 -0.02 2.82 16 4 C -0.54 -30.60 8.37 25.60 0.21 -30.38 16 5 H 0.06 3.32 6.76 -2.91 -0.02 3.30 16 6 C 0.02 1.33 5.30 84.66 0.45 1.78 16 7 N -0.91 -50.05 11.32 21.45 0.24 -49.80 16 8 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 C 0.47 22.16 7.24 71.24 0.52 22.67 16 13 O -0.54 -27.75 14.74 21.95 0.32 -27.43 16 14 O -0.35 -13.37 9.89 -51.34 -0.51 -13.88 16 15 C 0.07 2.30 3.34 31.80 0.11 2.41 16 16 H 0.07 2.74 7.29 -2.39 -0.02 2.73 16 17 C 0.03 0.78 6.28 86.65 0.54 1.32 16 18 N -0.51 -11.14 4.97 -864.16 -4.30 -15.44 16 19 C 0.01 0.13 8.22 127.69 1.05 1.18 16 20 C 0.10 2.11 0.84 2.92 0.00 2.11 16 21 C -0.16 -2.37 6.94 71.98 0.50 -1.88 16 22 C 0.51 11.15 7.20 71.24 0.51 11.66 16 23 O -0.55 -15.14 16.38 21.96 0.36 -14.78 16 24 O -0.50 -7.72 12.46 -51.41 -0.64 -8.36 16 25 C -0.11 -2.82 5.84 31.47 0.18 -2.64 16 26 H 0.08 3.98 6.07 -2.39 -0.01 3.97 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 2.06 8.12 -2.38 -0.02 2.04 16 29 H 0.27 13.97 8.31 -92.70 -0.77 13.20 16 30 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.07 1.82 8.01 -2.39 -0.02 1.80 16 32 H 0.06 0.70 6.15 -2.39 -0.01 0.69 16 33 H 0.09 1.20 7.24 -2.39 -0.02 1.18 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.19 7.63 -2.39 -0.02 1.17 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.02 6.66 -2.39 -0.02 1.01 16 38 H 0.42 2.98 9.10 -74.06 -0.67 2.31 16 39 H 0.11 2.59 7.62 -2.39 -0.02 2.57 16 40 H 0.09 2.47 6.79 -2.39 -0.02 2.45 16 Total: -1.00 -68.05 328.31 2.58 -65.47 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.39 Total: 12.71 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 4.69 Total: 5.74 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -4.06 Total: -65.24 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: -0.46 Total: -64.45 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.05 2.58 -65.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.909 kcal (2) G-P(sol) polarization free energy of solvation -68.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds