Wall clock time and date at job start Tue Mar 31 2020 06:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46857 * 2 1 4 4 C 1.50697 * 109.47071 * 239.99634 * 2 1 3 5 5 H 1.07999 * 120.00459 * 239.99688 * 4 2 1 6 6 C 1.37881 * 119.99871 * 60.00487 * 4 2 1 7 7 N 1.31516 * 119.99742 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00021 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47138 * 89.99546 * 8 6 4 10 10 H 1.48499 * 109.47011 * 209.99786 * 8 6 4 11 11 H 1.48500 * 109.47068 * 329.99573 * 8 6 4 12 12 C 1.50702 * 109.46966 * 120.00017 * 2 1 3 13 13 O 1.20820 * 120.00390 * 120.00561 * 12 2 1 14 14 O 1.34231 * 119.99697 * 299.99566 * 12 2 1 15 15 C 1.45207 * 117.00017 * 180.02562 * 14 12 2 16 16 H 1.09007 * 110.90191 * 26.13312 * 15 14 12 17 17 C 1.55377 * 111.17325 * 262.11943 * 15 14 12 18 18 N 1.47841 * 104.83923 * 204.89975 * 17 15 14 19 19 C 1.46899 * 111.00358 * 146.36426 * 18 17 15 20 20 C 1.47447 * 108.56604 * 24.09521 * 18 17 15 21 21 C 1.52997 * 110.02314 * 239.53153 * 20 18 17 22 22 C 1.50702 * 109.88571 * 118.41855 * 20 18 17 23 23 O 1.20829 * 119.99553 * 229.80394 * 22 20 18 24 24 O 1.34222 * 120.00154 * 49.80570 * 22 20 18 25 25 C 1.54318 * 107.23138 * 359.01368 * 20 18 17 26 26 H 1.08998 * 109.47245 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46961 * 299.99804 * 1 2 3 28 28 H 1.08993 * 109.47018 * 60.00087 * 1 2 3 29 29 H 0.97004 * 119.99687 * 180.02562 * 7 6 4 30 30 H 1.09005 * 110.35277 * 86.05139 * 17 15 14 31 31 H 1.09008 * 110.45022 * 323.79255 * 17 15 14 32 32 H 1.09000 * 109.46879 * 284.57871 * 19 18 17 33 33 H 1.09003 * 109.46843 * 44.57767 * 19 18 17 34 34 H 1.09000 * 109.46931 * 164.57441 * 19 18 17 35 35 H 1.08998 * 109.46836 * 177.84880 * 21 20 18 36 36 H 1.08998 * 109.47055 * 297.85075 * 21 20 18 37 37 H 1.09001 * 109.47503 * 57.85270 * 21 20 18 38 38 H 0.96701 * 116.99894 * 179.97438 * 24 22 20 39 39 H 1.09001 * 110.70543 * 96.09979 * 25 20 18 40 40 H 1.09003 * 110.70408 * 219.15673 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3449 -2.1616 -4.4122 10 1 2.4873 -0.1403 -5.1120 11 1 3.6309 -1.7566 -3.7119 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1197 14 8 1.7081 -0.2517 2.4496 15 6 2.2276 -0.9856 3.5898 16 1 3.1475 -1.5091 3.3289 17 6 1.1668 -1.9709 4.1537 18 7 1.5456 -2.1654 5.5695 19 6 0.3569 -2.3570 6.4110 20 6 2.3234 -0.9938 6.0126 21 6 3.7139 -1.4329 6.4760 22 6 1.6041 -0.2971 7.1389 23 8 1.4246 0.8969 7.0939 24 8 1.1630 -1.0030 8.1918 25 6 2.4488 -0.0441 4.8028 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7083 1.1609 -3.4844 30 1 1.2062 -2.9186 3.6166 31 1 0.1691 -1.5373 4.0840 32 1 -0.1412 -1.3990 6.5598 33 1 -0.3271 -3.0500 5.9212 34 1 0.6571 -2.7643 7.3765 35 1 4.2939 -0.5565 6.7653 36 1 3.6173 -2.1030 7.3302 37 1 4.2209 -1.9518 5.6626 38 1 0.7077 -0.5122 8.8897 39 1 1.6796 0.7274 4.8371 40 1 3.4415 0.4046 4.7663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:33 Heat of formation + Delta-G solvation = -162.294381 kcal Electronic energy + Delta-G solvation = -23537.284029 eV Core-core repulsion = 19931.715972 eV Total energy + Delta-G solvation = -3605.568057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46837 -39.75327 -38.31950 -36.59579 -35.62065 -33.90947 -32.44038 -31.15594 -30.30183 -26.78033 -25.31885 -25.21262 -24.05156 -23.23057 -21.35108 -19.88625 -19.81795 -18.30268 -17.27524 -16.92672 -16.34688 -16.11446 -15.47194 -15.17057 -14.95951 -14.74435 -14.43903 -14.05222 -13.63190 -13.24606 -12.96146 -12.83409 -12.77474 -12.44609 -12.08655 -11.98733 -11.86189 -11.64398 -11.47036 -11.21123 -11.07895 -10.83825 -10.79958 -10.74966 -10.70628 -10.38372 -10.06984 -10.01952 -9.16696 -9.06404 -8.72321 -8.46525 -6.12012 -4.17691 1.81408 2.57938 3.19965 3.23626 3.29871 3.35620 3.42564 3.77725 4.15172 4.39843 4.41843 4.77058 4.91232 5.03152 5.08654 5.10752 5.21465 5.23430 5.40331 5.51925 5.56568 5.72805 5.76778 5.82482 5.91358 5.97761 6.12675 6.19771 6.52012 6.63060 6.64579 6.84174 6.85753 7.18311 7.41009 7.54382 7.72063 7.92574 8.11830 8.79817 8.91485 9.48055 10.95370 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036787 B = 0.003609 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.950134 B = 7757.290242 C = 7897.476373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.465 3.535 13 O -0.513 6.513 14 O -0.353 6.353 15 C 0.076 3.924 16 H 0.103 0.897 17 C 0.024 3.976 18 N -0.506 5.506 19 C 0.017 3.983 20 C 0.110 3.890 21 C -0.130 4.130 22 C 0.478 3.522 23 O -0.506 6.506 24 O -0.507 6.507 25 C -0.126 4.126 26 H 0.031 0.969 27 H 0.023 0.977 28 H 0.096 0.904 29 H 0.263 0.737 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.402 0.598 39 H 0.098 0.902 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 -3.420 19.968 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.196 1.196 12 C 0.310 3.690 13 O -0.399 6.399 14 O -0.270 6.270 15 C 0.020 3.980 16 H 0.121 0.879 17 C -0.104 4.104 18 N -0.233 5.233 19 C -0.131 4.131 20 C 0.020 3.980 21 C -0.187 4.187 22 C 0.318 3.682 23 O -0.392 6.392 24 O -0.319 6.319 25 C -0.164 4.164 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.261 0.739 39 H 0.116 0.884 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.492 -3.932 19.546 19.944 hybrid contribution -0.558 0.557 -0.320 0.851 sum -0.065 -3.374 19.226 19.520 Atomic orbital electron populations 1.21735 0.95598 1.00031 1.01750 1.18779 0.94864 0.97024 0.85464 0.91757 1.21130 1.31979 1.13255 0.88733 0.90585 1.24940 0.94898 0.94991 0.99150 1.69882 1.36489 1.22787 1.23886 0.86372 0.79466 0.79208 0.81725 1.20523 1.21137 1.19639 1.25450 0.76401 0.83249 0.83945 1.90494 1.36288 1.26670 1.86436 1.86711 1.70065 1.55052 1.15178 1.23601 0.97891 0.91947 0.84609 0.87884 1.23604 0.98363 1.00681 0.87703 1.63723 1.21547 1.35289 1.02727 1.22975 0.91271 1.00309 0.98495 1.21885 0.96019 0.89804 0.90322 1.21816 0.92046 1.01866 1.03021 1.23738 0.75554 0.85965 0.82917 1.90745 1.53333 1.16459 1.78618 1.84875 1.70311 1.45009 1.31755 1.22902 1.05378 0.97641 0.90481 0.94979 0.95843 0.88523 0.92674 0.88431 0.91939 0.95428 0.91142 0.88694 0.91640 0.90960 0.89921 0.73903 0.88394 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.90 37.16 0.33 -2.81 16 2 C 0.06 1.45 2.74 -92.92 -0.25 1.20 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.27 8.37 -34.44 -0.29 -14.56 16 5 H 0.08 2.20 6.76 -52.49 -0.35 1.84 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.47 10.74 7.25 36.01 0.26 11.00 16 13 O -0.51 -12.71 14.66 -18.75 -0.27 -12.98 16 14 O -0.35 -6.94 9.96 -39.26 -0.39 -7.33 16 15 C 0.08 1.21 3.45 -24.34 -0.08 1.13 16 16 H 0.10 1.72 7.13 -51.93 -0.37 1.34 16 17 C 0.02 0.34 6.41 -2.04 -0.01 0.33 16 18 N -0.51 -6.03 5.08 -224.93 -1.14 -7.17 16 19 C 0.02 0.17 8.02 60.06 0.48 0.65 16 20 C 0.11 1.27 1.11 -131.76 -0.15 1.13 16 21 C -0.13 -1.22 8.69 37.16 0.32 -0.90 16 22 C 0.48 5.35 5.45 36.01 0.20 5.54 16 23 O -0.51 -7.13 16.32 -18.75 -0.31 -7.44 16 24 O -0.51 -3.93 9.74 -39.24 -0.38 -4.31 16 25 C -0.13 -1.70 5.45 -24.91 -0.14 -1.83 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 28 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.06 0.89 7.81 -51.92 -0.41 0.48 16 32 H 0.03 0.28 6.08 -51.93 -0.32 -0.03 16 33 H 0.07 0.65 8.01 -51.93 -0.42 0.24 16 34 H 0.09 0.83 6.61 -51.93 -0.34 0.49 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.40 1.47 9.10 45.56 0.41 1.89 16 39 H 0.10 1.46 7.07 -51.93 -0.37 1.09 16 40 H 0.09 1.15 7.83 -51.93 -0.41 0.74 16 LS Contribution 326.82 15.07 4.93 4.93 Total: -1.00 -31.45 326.82 -6.36 -37.82 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.97 Total: 1.79 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 0.58 Total: 2.47 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: -0.51 Total: -31.25 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.35 Total: -32.06 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.45 -6.36 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.479 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds