Wall clock time and date at job start Tue Mar 31 2020 06:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46857 * 2 1 4 4 C 1.50697 * 109.47071 * 239.99634 * 2 1 3 5 5 H 1.07999 * 120.00459 * 239.99688 * 4 2 1 6 6 C 1.37881 * 119.99871 * 60.00487 * 4 2 1 7 7 N 1.31516 * 119.99742 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00021 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47138 * 89.99546 * 8 6 4 10 10 H 1.48499 * 109.47011 * 209.99786 * 8 6 4 11 11 H 1.48500 * 109.47068 * 329.99573 * 8 6 4 12 12 C 1.50702 * 109.46966 * 120.00017 * 2 1 3 13 13 O 1.20820 * 120.00390 * 120.00561 * 12 2 1 14 14 O 1.34231 * 119.99697 * 299.99566 * 12 2 1 15 15 C 1.45207 * 117.00017 * 180.02562 * 14 12 2 16 16 H 1.09007 * 110.90191 * 26.13312 * 15 14 12 17 17 C 1.55377 * 111.17325 * 262.11943 * 15 14 12 18 18 N 1.47841 * 104.83923 * 204.89975 * 17 15 14 19 19 C 1.46899 * 111.00358 * 146.36426 * 18 17 15 20 20 C 1.47447 * 108.56604 * 24.09521 * 18 17 15 21 21 C 1.52997 * 110.02314 * 239.53153 * 20 18 17 22 22 C 1.50702 * 109.88571 * 118.41855 * 20 18 17 23 23 O 1.20829 * 119.99553 * 229.80394 * 22 20 18 24 24 O 1.34222 * 120.00154 * 49.80570 * 22 20 18 25 25 C 1.54318 * 107.23138 * 359.01368 * 20 18 17 26 26 H 1.08998 * 109.47245 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46961 * 299.99804 * 1 2 3 28 28 H 1.08993 * 109.47018 * 60.00087 * 1 2 3 29 29 H 0.97004 * 119.99687 * 180.02562 * 7 6 4 30 30 H 1.09005 * 110.35277 * 86.05139 * 17 15 14 31 31 H 1.09008 * 110.45022 * 323.79255 * 17 15 14 32 32 H 1.09000 * 109.46879 * 284.57871 * 19 18 17 33 33 H 1.09003 * 109.46843 * 44.57767 * 19 18 17 34 34 H 1.09000 * 109.46931 * 164.57441 * 19 18 17 35 35 H 1.08998 * 109.46836 * 177.84880 * 21 20 18 36 36 H 1.08998 * 109.47055 * 297.85075 * 21 20 18 37 37 H 1.09001 * 109.47503 * 57.85270 * 21 20 18 38 38 H 0.96701 * 116.99894 * 179.97438 * 24 22 20 39 39 H 1.09001 * 110.70543 * 96.09979 * 25 20 18 40 40 H 1.09003 * 110.70408 * 219.15673 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3449 -2.1616 -4.4122 10 1 2.4873 -0.1403 -5.1120 11 1 3.6309 -1.7566 -3.7119 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1197 14 8 1.7081 -0.2517 2.4496 15 6 2.2276 -0.9856 3.5898 16 1 3.1475 -1.5091 3.3289 17 6 1.1668 -1.9709 4.1537 18 7 1.5456 -2.1654 5.5695 19 6 0.3569 -2.3570 6.4110 20 6 2.3234 -0.9938 6.0126 21 6 3.7139 -1.4329 6.4760 22 6 1.6041 -0.2971 7.1389 23 8 1.4246 0.8969 7.0939 24 8 1.1630 -1.0030 8.1918 25 6 2.4488 -0.0441 4.8028 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.7083 1.1609 -3.4844 30 1 1.2062 -2.9186 3.6166 31 1 0.1691 -1.5373 4.0840 32 1 -0.1412 -1.3990 6.5598 33 1 -0.3271 -3.0500 5.9212 34 1 0.6571 -2.7643 7.3765 35 1 4.2939 -0.5565 6.7653 36 1 3.6173 -2.1030 7.3302 37 1 4.2209 -1.9518 5.6626 38 1 0.7077 -0.5122 8.8897 39 1 1.6796 0.7274 4.8371 40 1 3.4415 0.4046 4.7663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:33 Heat of formation + Delta-G solvation = -183.716708 kcal Electronic energy + Delta-G solvation = -23538.212971 eV Core-core repulsion = 19931.715972 eV Total energy + Delta-G solvation = -3606.496999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.42323 -41.35138 -39.44453 -37.44345 -37.22361 -35.93302 -33.37132 -32.81621 -31.79422 -27.72825 -27.29231 -26.27176 -25.31488 -24.60975 -22.73124 -21.53440 -20.76270 -19.17776 -18.75672 -18.21242 -18.17219 -17.34336 -17.01428 -16.77612 -16.20213 -15.97093 -15.72971 -15.36629 -14.71799 -14.54262 -14.33835 -14.11115 -13.90300 -13.64744 -13.56452 -13.11892 -12.99744 -12.92461 -12.76653 -12.72459 -12.61817 -12.51511 -12.31716 -12.09178 -12.05416 -12.01859 -11.68365 -11.45201 -11.12400 -11.03859 -10.53628 -9.68505 -8.20278 -6.33739 0.94581 1.39058 1.43081 1.43786 1.52484 1.61190 1.99177 2.42900 2.70043 3.10018 3.15019 3.29096 3.74959 3.81096 3.93966 4.12943 4.22633 4.29846 4.34055 4.53473 4.61105 4.66746 4.69854 4.75972 4.77594 4.83679 4.88388 4.98797 5.08054 5.22028 5.36055 5.38727 5.46096 5.62239 5.68503 5.72288 5.87338 6.09033 6.72988 6.84414 7.01060 7.35354 8.86240 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036787 B = 0.003609 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.950134 B = 7757.290242 C = 7897.476373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.049 3.951 3 H 0.050 0.950 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.275 1.275 11 H -0.274 1.274 12 C 0.475 3.525 13 O -0.534 6.534 14 O -0.352 6.352 15 C 0.067 3.933 16 H 0.096 0.904 17 C 0.030 3.970 18 N -0.504 5.504 19 C 0.015 3.985 20 C 0.108 3.892 21 C -0.127 4.127 22 C 0.487 3.513 23 O -0.539 6.539 24 O -0.494 6.494 25 C -0.121 4.121 26 H 0.030 0.970 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.268 0.732 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.024 0.976 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.424 0.576 39 H 0.083 0.917 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 -4.120 21.358 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.030 3.970 3 H 0.068 0.932 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.200 1.200 11 H -0.199 1.199 12 C 0.320 3.680 13 O -0.423 6.423 14 O -0.268 6.268 15 C 0.011 3.989 16 H 0.114 0.886 17 C -0.098 4.098 18 N -0.231 5.231 19 C -0.131 4.131 20 C 0.018 3.982 21 C -0.185 4.185 22 C 0.329 3.671 23 O -0.428 6.428 24 O -0.308 6.308 25 C -0.159 4.159 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.095 0.905 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.286 0.714 39 H 0.102 0.898 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.428 -4.631 20.986 21.495 hybrid contribution -0.572 0.783 -0.614 1.147 sum -0.144 -3.848 20.372 20.733 Atomic orbital electron populations 1.21557 0.94394 0.99963 1.01877 1.18699 0.95905 0.96174 0.86205 0.93220 1.21254 1.32654 1.13305 0.90368 0.92341 1.25649 0.94879 0.95611 1.01613 1.69967 1.36686 1.23420 1.24755 0.85459 0.78775 0.78407 0.78463 1.19743 1.20026 1.19924 1.24858 0.75912 0.82595 0.84650 1.90474 1.37234 1.27545 1.87051 1.86637 1.69818 1.55305 1.15066 1.23923 0.98194 0.92980 0.83832 0.88597 1.23496 0.97502 0.99668 0.89164 1.63798 1.22401 1.35247 1.01618 1.23082 0.90682 1.00426 0.98960 1.21932 0.97335 0.89129 0.89849 1.21835 0.90629 1.02635 1.03356 1.23510 0.74948 0.85305 0.83319 1.90747 1.54764 1.17835 1.79437 1.84794 1.69840 1.44617 1.31529 1.22881 1.05566 0.97291 0.90199 0.95034 0.93567 0.90391 0.92268 0.89012 0.92171 0.95708 0.90489 0.86965 0.90461 0.89597 0.90233 0.71404 0.89831 0.87577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.90 71.98 0.64 -5.04 16 2 C 0.05 2.53 2.74 -12.29 -0.03 2.50 16 3 H 0.05 2.68 8.14 -2.38 -0.02 2.66 16 4 C -0.54 -30.47 8.37 25.60 0.21 -30.25 16 5 H 0.06 3.46 6.76 -2.91 -0.02 3.44 16 6 C 0.02 1.23 5.30 84.66 0.45 1.68 16 7 N -0.91 -50.55 11.32 21.45 0.24 -50.31 16 8 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 12 C 0.47 22.26 7.25 71.24 0.52 22.78 16 13 O -0.53 -26.99 14.66 21.98 0.32 -26.67 16 14 O -0.35 -13.92 9.96 -51.43 -0.51 -14.43 16 15 C 0.07 2.11 3.45 32.14 0.11 2.22 16 16 H 0.10 3.21 7.13 -2.38 -0.02 3.19 16 17 C 0.03 0.82 6.41 86.94 0.56 1.37 16 18 N -0.50 -11.10 5.08 -865.54 -4.40 -15.50 16 19 C 0.02 0.27 8.02 127.69 1.02 1.29 16 20 C 0.11 2.30 1.11 3.12 0.00 2.31 16 21 C -0.13 -2.10 8.69 71.98 0.63 -1.47 16 22 C 0.49 9.86 5.45 71.24 0.39 10.25 16 23 O -0.54 -14.46 16.32 21.95 0.36 -14.10 16 24 O -0.49 -6.08 9.74 -51.34 -0.50 -6.58 16 25 C -0.12 -3.17 5.45 31.77 0.17 -3.00 16 26 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 1.91 8.11 -2.39 -0.02 1.89 16 28 H 0.08 3.99 6.07 -2.39 -0.01 3.98 16 29 H 0.27 14.02 8.31 -92.70 -0.77 13.25 16 30 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 31 H 0.06 1.67 7.81 -2.38 -0.02 1.65 16 32 H 0.02 0.45 6.08 -2.39 -0.01 0.44 16 33 H 0.08 1.26 8.01 -2.39 -0.02 1.24 16 34 H 0.11 1.59 6.61 -2.39 -0.02 1.57 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.42 1.68 9.10 -74.06 -0.67 1.01 16 39 H 0.08 2.46 7.07 -2.39 -0.02 2.45 16 40 H 0.11 2.48 7.83 -2.39 -0.02 2.47 16 Total: -1.00 -67.19 326.82 2.60 -64.59 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.39 Total: 12.66 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 4.67 Total: 4.63 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -4.15 Total: -65.81 kcal Atomic # 8 Polarization: -61.44 SS G_CDS: -0.33 Total: -61.78 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.19 2.60 -64.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.125 kcal (2) G-P(sol) polarization free energy of solvation -67.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds