Wall clock time and date at job start Tue Mar 31 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47485 * 2 1 4 4 C 1.50702 * 109.47520 * 239.99495 * 2 1 3 5 5 H 1.07992 * 119.99955 * 240.00527 * 4 2 1 6 6 C 1.37876 * 119.99288 * 59.99895 * 4 2 1 7 7 N 1.31515 * 120.00679 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99472 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47249 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46979 * 120.00194 * 8 6 4 11 11 H 1.48502 * 109.46914 * 240.00174 * 8 6 4 12 12 C 1.50707 * 109.47061 * 119.99685 * 2 1 3 13 13 O 1.20821 * 120.00209 * 120.00205 * 12 2 1 14 14 O 1.34230 * 119.99606 * 300.00087 * 12 2 1 15 15 C 1.45209 * 116.99610 * 180.02562 * 14 12 2 16 16 H 1.08996 * 110.78212 * 26.75443 * 15 14 12 17 17 C 1.55187 * 110.79817 * 263.39950 * 15 14 12 18 18 N 1.48538 * 103.23871 * 204.24146 * 17 15 14 19 19 C 1.46898 * 111.00157 * 159.74511 * 18 17 15 20 20 C 1.47898 * 105.81927 * 39.22816 * 18 17 15 21 21 C 1.53003 * 109.91814 * 94.02436 * 20 18 17 22 22 C 1.50700 * 110.08410 * 215.22862 * 20 18 17 23 23 O 1.20828 * 120.00013 * 142.68846 * 22 20 18 24 24 O 1.34229 * 119.99939 * 322.69235 * 22 20 18 25 25 C 1.54000 * 107.06012 * 334.67374 * 20 18 17 26 26 H 1.09001 * 109.47542 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47469 * 300.00520 * 1 2 3 28 28 H 1.09000 * 109.47413 * 60.00349 * 1 2 3 29 29 H 0.96998 * 120.00078 * 179.97438 * 7 6 4 30 30 H 1.08998 * 110.64686 * 85.81306 * 17 15 14 31 31 H 1.09004 * 110.82491 * 322.75133 * 17 15 14 32 32 H 1.08999 * 109.47133 * 302.60121 * 19 18 17 33 33 H 1.08996 * 109.47056 * 62.60138 * 19 18 17 34 34 H 1.09006 * 109.46571 * 182.60634 * 19 18 17 35 35 H 1.09001 * 109.47062 * 302.41271 * 21 20 18 36 36 H 1.09001 * 109.46867 * 62.40977 * 21 20 18 37 37 H 1.08999 * 109.47198 * 182.41151 * 21 20 18 38 38 H 0.96693 * 116.99989 * 179.97438 * 24 22 20 39 39 H 1.09002 * 110.31026 * 120.14103 * 25 20 18 40 40 H 1.09000 * 110.30915 * 242.21132 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4826 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1465 -2.2871 -3.6036 10 1 1.1661 -1.5869 -4.8159 11 1 3.1467 -0.1876 -4.8164 12 6 2.0323 -0.7104 1.2306 13 8 2.7269 -1.6927 1.1198 14 8 1.7079 -0.2517 2.4496 15 6 2.2276 -0.9855 3.5898 16 1 3.1531 -1.4992 3.3299 17 6 1.1728 -1.9896 4.1260 18 7 1.5749 -2.1810 5.5431 19 6 0.4578 -2.7032 6.3414 20 6 1.9944 -0.8478 6.0267 21 6 0.8171 -0.1457 6.7064 22 6 3.1391 -0.9859 6.9971 23 8 4.0305 -0.1702 7.0000 24 8 3.1685 -2.0152 7.8582 25 6 2.4456 -0.0416 4.7946 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.7095 1.1616 -3.4844 30 1 1.2267 -2.9316 3.5803 31 1 0.1697 -1.5676 4.0645 32 1 -0.3902 -2.0222 6.2687 33 1 0.1693 -3.6843 5.9645 34 1 0.7656 -2.7902 7.3835 35 1 -0.0133 -0.0670 6.0047 36 1 0.5038 -0.7220 7.5769 37 1 1.1221 0.8522 7.0218 38 1 3.9231 -2.0618 8.4610 39 1 1.8373 0.8565 4.6866 40 1 3.4992 0.2240 4.8813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:36 Heat of formation + Delta-G solvation = -168.088413 kcal Electronic energy + Delta-G solvation = -23464.016335 eV Core-core repulsion = 19858.197029 eV Total energy + Delta-G solvation = -3605.819305 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15342 -39.73819 -38.58379 -36.32737 -35.68063 -33.90904 -31.95841 -31.43861 -30.42565 -26.45289 -25.98988 -25.22570 -23.86284 -23.06501 -21.20345 -19.85133 -19.66234 -18.17294 -17.29168 -16.93911 -16.17185 -16.00067 -15.63835 -15.13887 -15.03242 -14.74275 -14.36458 -13.91757 -13.84828 -13.30511 -12.96339 -12.81530 -12.52660 -12.37809 -12.26500 -11.93800 -11.75716 -11.66125 -11.63946 -11.42037 -11.07981 -10.78861 -10.73277 -10.68388 -10.67054 -10.36937 -10.06969 -9.98902 -9.15903 -9.05378 -8.80639 -8.46922 -6.12255 -4.17614 1.97883 2.79534 3.16169 3.25073 3.28711 3.36085 3.44580 3.85524 4.17184 4.39623 4.47674 4.54563 4.93355 4.98650 5.08288 5.19457 5.21415 5.22981 5.28319 5.36401 5.51418 5.71122 5.71445 5.75463 5.80815 5.94984 6.16450 6.29194 6.46532 6.62930 6.64707 6.83298 6.85199 7.19624 7.40964 7.71851 7.73184 7.92759 8.11945 8.81339 8.92202 9.48287 10.95202 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033766 B = 0.003617 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.040557 B = 7740.130352 C = 7838.450710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.065 0.935 4 C -0.512 4.512 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.903 3.097 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.464 3.536 13 O -0.512 6.512 14 O -0.355 6.355 15 C 0.079 3.921 16 H 0.099 0.901 17 C 0.023 3.977 18 N -0.499 5.499 19 C 0.012 3.988 20 C 0.102 3.898 21 C -0.168 4.168 22 C 0.506 3.494 23 O -0.514 6.514 24 O -0.503 6.503 25 C -0.117 4.117 26 H 0.031 0.969 27 H 0.023 0.977 28 H 0.096 0.904 29 H 0.263 0.737 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.405 0.595 39 H 0.099 0.901 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.330 -2.845 19.902 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.309 3.691 13 O -0.399 6.399 14 O -0.272 6.272 15 C 0.023 3.977 16 H 0.117 0.883 17 C -0.105 4.105 18 N -0.225 5.225 19 C -0.136 4.136 20 C 0.010 3.990 21 C -0.226 4.226 22 C 0.347 3.653 23 O -0.401 6.401 24 O -0.313 6.313 25 C -0.155 4.155 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.263 0.737 39 H 0.117 0.883 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.857 -3.183 19.535 19.880 hybrid contribution 0.211 -0.030 -0.381 0.437 sum -1.646 -3.213 19.154 19.491 Atomic orbital electron populations 1.21726 0.95591 1.00011 1.01718 1.18780 0.94859 0.97018 0.85516 0.91773 1.21178 1.31838 1.13240 0.88741 0.90545 1.24934 0.94887 0.95009 0.99146 1.69885 1.36603 1.22825 1.23772 0.86334 0.78663 0.79750 0.82155 1.19484 1.20885 1.20880 1.25427 0.76437 0.83265 0.83980 1.90502 1.36216 1.26690 1.86456 1.86701 1.70090 1.55208 1.15240 1.23372 0.97917 0.91856 0.84569 0.88257 1.23686 0.98077 1.00673 0.88046 1.64695 1.35566 1.19663 1.02584 1.22651 0.91810 1.00290 0.98892 1.21504 0.92544 0.91551 0.93360 1.22425 0.97150 1.01358 1.01664 1.23085 0.85959 0.77355 0.78922 1.90723 1.37737 1.42442 1.69245 1.84584 1.51099 1.48164 1.47494 1.22599 1.04741 0.98388 0.89752 0.94994 0.95841 0.88551 0.92741 0.88476 0.91785 0.94266 0.90744 0.90339 0.90060 0.90743 0.90793 0.73673 0.88255 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.90 37.15 0.33 -2.74 16 2 C 0.06 1.43 2.74 -92.92 -0.25 1.18 16 3 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 4 C -0.51 -14.25 8.37 -34.44 -0.29 -14.54 16 5 H 0.08 2.23 6.76 -52.49 -0.35 1.87 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.62 11.32 55.43 0.63 -23.99 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.46 10.71 7.25 36.01 0.26 10.97 16 13 O -0.51 -12.88 14.67 -18.75 -0.27 -13.16 16 14 O -0.35 -6.84 9.88 -39.26 -0.39 -7.23 16 15 C 0.08 1.28 3.44 -24.73 -0.09 1.19 16 16 H 0.10 1.78 7.14 -51.93 -0.37 1.41 16 17 C 0.02 0.31 6.29 -1.76 -0.01 0.30 16 18 N -0.50 -5.91 5.00 -224.31 -1.12 -7.03 16 19 C 0.01 0.10 8.22 60.06 0.49 0.60 16 20 C 0.10 1.17 0.84 -131.68 -0.11 1.06 16 21 C -0.17 -1.47 6.95 37.16 0.26 -1.21 16 22 C 0.51 5.99 7.20 36.01 0.26 6.25 16 23 O -0.51 -7.42 16.34 -18.75 -0.31 -7.73 16 24 O -0.50 -4.55 12.49 -39.26 -0.49 -5.04 16 25 C -0.12 -1.57 5.83 -25.37 -0.15 -1.72 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.47 8.11 -51.93 -0.42 0.04 16 28 H 0.10 2.42 6.07 -51.93 -0.32 2.10 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 30 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.06 0.83 7.96 -51.93 -0.41 0.41 16 32 H 0.04 0.31 6.27 -51.93 -0.33 -0.01 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.64 7.13 -51.93 -0.37 0.27 16 35 H 0.08 0.69 7.59 -51.93 -0.39 0.30 16 36 H 0.07 0.55 6.69 -51.93 -0.35 0.20 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.41 1.93 9.10 45.56 0.41 2.34 16 39 H 0.10 1.24 7.62 -51.93 -0.40 0.84 16 40 H 0.10 1.40 6.75 -51.93 -0.35 1.05 16 LS Contribution 328.12 15.07 4.94 4.94 Total: -1.00 -31.75 328.12 -6.31 -38.06 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.89 Total: 1.90 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 0.61 Total: 2.94 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: -0.49 Total: -31.02 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -1.46 Total: -33.15 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.75 -6.31 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.028 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds