Wall clock time and date at job start Tue Mar 31 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47485 * 2 1 4 4 C 1.50702 * 109.47520 * 239.99495 * 2 1 3 5 5 H 1.07992 * 119.99955 * 240.00527 * 4 2 1 6 6 C 1.37876 * 119.99288 * 59.99895 * 4 2 1 7 7 N 1.31515 * 120.00679 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99472 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47249 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46979 * 120.00194 * 8 6 4 11 11 H 1.48502 * 109.46914 * 240.00174 * 8 6 4 12 12 C 1.50707 * 109.47061 * 119.99685 * 2 1 3 13 13 O 1.20821 * 120.00209 * 120.00205 * 12 2 1 14 14 O 1.34230 * 119.99606 * 300.00087 * 12 2 1 15 15 C 1.45209 * 116.99610 * 180.02562 * 14 12 2 16 16 H 1.08996 * 110.78212 * 26.75443 * 15 14 12 17 17 C 1.55187 * 110.79817 * 263.39950 * 15 14 12 18 18 N 1.48538 * 103.23871 * 204.24146 * 17 15 14 19 19 C 1.46898 * 111.00157 * 159.74511 * 18 17 15 20 20 C 1.47898 * 105.81927 * 39.22816 * 18 17 15 21 21 C 1.53003 * 109.91814 * 94.02436 * 20 18 17 22 22 C 1.50700 * 110.08410 * 215.22862 * 20 18 17 23 23 O 1.20828 * 120.00013 * 142.68846 * 22 20 18 24 24 O 1.34229 * 119.99939 * 322.69235 * 22 20 18 25 25 C 1.54000 * 107.06012 * 334.67374 * 20 18 17 26 26 H 1.09001 * 109.47542 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47469 * 300.00520 * 1 2 3 28 28 H 1.09000 * 109.47413 * 60.00349 * 1 2 3 29 29 H 0.96998 * 120.00078 * 179.97438 * 7 6 4 30 30 H 1.08998 * 110.64686 * 85.81306 * 17 15 14 31 31 H 1.09004 * 110.82491 * 322.75133 * 17 15 14 32 32 H 1.08999 * 109.47133 * 302.60121 * 19 18 17 33 33 H 1.08996 * 109.47056 * 62.60138 * 19 18 17 34 34 H 1.09006 * 109.46571 * 182.60634 * 19 18 17 35 35 H 1.09001 * 109.47062 * 302.41271 * 21 20 18 36 36 H 1.09001 * 109.46867 * 62.40977 * 21 20 18 37 37 H 1.08999 * 109.47198 * 182.41151 * 21 20 18 38 38 H 0.96693 * 116.99989 * 179.97438 * 24 22 20 39 39 H 1.09002 * 110.31026 * 120.14103 * 25 20 18 40 40 H 1.09000 * 110.30915 * 242.21132 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4826 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1465 -2.2871 -3.6036 10 1 1.1661 -1.5869 -4.8159 11 1 3.1467 -0.1876 -4.8164 12 6 2.0323 -0.7104 1.2306 13 8 2.7269 -1.6927 1.1198 14 8 1.7079 -0.2517 2.4496 15 6 2.2276 -0.9855 3.5898 16 1 3.1531 -1.4992 3.3299 17 6 1.1728 -1.9896 4.1260 18 7 1.5749 -2.1810 5.5431 19 6 0.4578 -2.7032 6.3414 20 6 1.9944 -0.8478 6.0267 21 6 0.8171 -0.1457 6.7064 22 6 3.1391 -0.9859 6.9971 23 8 4.0305 -0.1702 7.0000 24 8 3.1685 -2.0152 7.8582 25 6 2.4456 -0.0416 4.7946 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.7095 1.1616 -3.4844 30 1 1.2267 -2.9316 3.5803 31 1 0.1697 -1.5676 4.0645 32 1 -0.3902 -2.0222 6.2687 33 1 0.1693 -3.6843 5.9645 34 1 0.7656 -2.7902 7.3835 35 1 -0.0133 -0.0670 6.0047 36 1 0.5038 -0.7220 7.5769 37 1 1.1221 0.8522 7.0218 38 1 3.9231 -2.0618 8.4610 39 1 1.8373 0.8565 4.6866 40 1 3.4992 0.2240 4.8813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:35 Heat of formation + Delta-G solvation = -190.007651 kcal Electronic energy + Delta-G solvation = -23464.966824 eV Core-core repulsion = 19858.197029 eV Total energy + Delta-G solvation = -3606.769795 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.17143 -41.27520 -39.70024 -37.34336 -37.17092 -35.92784 -33.07721 -32.68879 -32.07684 -27.34351 -27.27198 -26.90308 -25.33973 -24.29336 -22.57388 -21.46894 -20.62176 -19.08626 -18.72014 -18.31576 -18.05533 -17.44948 -16.84561 -16.73745 -16.30465 -15.91849 -15.55162 -15.18130 -15.02570 -14.56750 -14.27920 -14.05335 -13.83258 -13.69398 -13.29694 -13.29260 -12.99128 -12.80801 -12.73715 -12.61097 -12.57943 -12.52672 -12.51089 -12.28459 -12.06854 -11.83520 -11.63253 -11.42575 -11.10149 -11.03747 -10.53270 -9.68675 -8.20383 -6.33314 1.07253 1.39887 1.42419 1.43047 1.54734 1.72405 2.01048 2.42837 2.80135 3.09871 3.18799 3.41670 3.61000 3.84560 3.90912 4.22296 4.27528 4.34856 4.38145 4.51537 4.62775 4.65822 4.69570 4.72567 4.74787 4.85128 4.90888 5.02109 5.03185 5.10629 5.37446 5.45056 5.50463 5.61558 5.70109 5.79999 5.89694 6.10915 6.73411 6.96781 7.02576 7.35735 8.86179 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033766 B = 0.003617 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.040557 B = 7740.130352 C = 7838.450710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.050 3.950 3 H 0.051 0.949 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.962 3.038 9 H -0.277 1.277 10 H -0.271 1.271 11 H -0.274 1.274 12 C 0.473 3.527 13 O -0.540 6.540 14 O -0.347 6.347 15 C 0.069 3.931 16 H 0.075 0.925 17 C 0.032 3.968 18 N -0.508 5.508 19 C 0.009 3.991 20 C 0.102 3.898 21 C -0.164 4.164 22 C 0.509 3.491 23 O -0.546 6.546 24 O -0.495 6.495 25 C -0.112 4.112 26 H 0.030 0.970 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.268 0.732 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.425 0.575 39 H 0.111 0.889 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 -3.114 21.273 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.031 3.969 3 H 0.069 0.931 4 C -0.576 4.576 5 H 0.073 0.927 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.787 3.213 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.200 1.200 12 C 0.319 3.681 13 O -0.429 6.429 14 O -0.263 6.263 15 C 0.013 3.987 16 H 0.093 0.907 17 C -0.096 4.096 18 N -0.234 5.234 19 C -0.138 4.138 20 C 0.010 3.990 21 C -0.222 4.222 22 C 0.352 3.648 23 O -0.436 6.436 24 O -0.307 6.307 25 C -0.150 4.150 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.286 0.714 39 H 0.129 0.871 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.009 -3.452 20.950 21.444 hybrid contribution 0.598 0.038 -0.688 0.913 sum -2.411 -3.414 20.262 20.688 Atomic orbital electron populations 1.21547 0.94019 1.00014 1.02096 1.18706 0.96165 0.96088 0.85982 0.93132 1.21281 1.32569 1.13244 0.90536 0.92673 1.25607 0.94881 0.95637 1.01480 1.69958 1.36680 1.23336 1.24687 0.85445 0.78401 0.78522 0.78942 1.20227 1.19667 1.19958 1.24912 0.75851 0.82546 0.84825 1.90485 1.37401 1.27853 1.87133 1.86625 1.69623 1.55241 1.14855 1.23645 0.97869 0.93132 0.84033 0.90686 1.23537 0.97661 0.99210 0.89185 1.64681 1.37045 1.19957 1.01725 1.22765 0.91384 1.00678 0.98949 1.21506 0.93525 0.91341 0.92605 1.22440 0.95899 1.01621 1.02236 1.23105 0.85413 0.77269 0.79036 1.90720 1.38859 1.43763 1.70302 1.84526 1.52186 1.46694 1.47319 1.22564 1.04377 0.98598 0.89452 0.95073 0.93019 0.90458 0.92247 0.89651 0.90488 0.92684 0.90371 0.89109 0.89421 0.88837 0.90240 0.71363 0.87091 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.90 71.98 0.64 -4.82 16 2 C 0.05 2.53 2.74 -12.29 -0.03 2.50 16 3 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 4 C -0.54 -30.59 8.37 25.60 0.21 -30.37 16 5 H 0.06 3.31 6.76 -2.91 -0.02 3.29 16 6 C 0.02 1.31 5.30 84.65 0.45 1.76 16 7 N -0.91 -50.06 11.32 21.45 0.24 -49.81 16 8 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 9 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 C 0.47 22.23 7.25 71.24 0.52 22.75 16 13 O -0.54 -27.98 14.67 21.98 0.32 -27.66 16 14 O -0.35 -13.35 9.88 -51.42 -0.51 -13.86 16 15 C 0.07 2.23 3.44 31.89 0.11 2.34 16 16 H 0.07 2.80 7.14 -2.39 -0.02 2.78 16 17 C 0.03 0.84 6.29 86.74 0.55 1.38 16 18 N -0.51 -11.03 5.00 -863.60 -4.31 -15.35 16 19 C 0.01 0.14 8.22 127.69 1.05 1.19 16 20 C 0.10 2.13 0.84 2.93 0.00 2.13 16 21 C -0.16 -2.35 6.95 71.98 0.50 -1.85 16 22 C 0.51 11.22 7.20 71.24 0.51 11.73 16 23 O -0.55 -15.34 16.34 21.96 0.36 -14.98 16 24 O -0.50 -7.73 12.49 -51.41 -0.64 -8.37 16 25 C -0.11 -2.93 5.83 31.48 0.18 -2.74 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 2.02 8.11 -2.39 -0.02 2.01 16 28 H 0.08 3.87 6.07 -2.39 -0.01 3.85 16 29 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.08 1.82 7.96 -2.39 -0.02 1.80 16 32 H 0.05 0.67 6.27 -2.39 -0.01 0.66 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.16 7.13 -2.38 -0.02 1.14 16 35 H 0.09 1.18 7.59 -2.39 -0.02 1.16 16 36 H 0.09 1.01 6.69 -2.39 -0.02 0.99 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.42 3.01 9.10 -74.06 -0.67 2.34 16 39 H 0.11 2.61 7.62 -2.39 -0.02 2.59 16 40 H 0.09 2.47 6.75 -2.39 -0.02 2.45 16 Total: -1.00 -68.57 328.12 2.57 -66.00 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.39 Total: 12.19 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 4.69 Total: 5.99 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -4.07 Total: -65.16 kcal Atomic # 8 Polarization: -64.40 SS G_CDS: -0.47 Total: -64.87 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.57 2.57 -66.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.008 kcal (2) G-P(sol) polarization free energy of solvation -68.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds