Wall clock time and date at job start Tue Mar 31 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 5 5 H 1.07995 * 120.00006 * 240.00415 * 4 2 1 6 6 C 1.37875 * 120.00190 * 59.99565 * 4 2 1 7 7 N 1.31520 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47255 * 90.00191 * 8 6 4 10 10 H 1.48503 * 109.46900 * 210.00227 * 8 6 4 11 11 H 1.48494 * 109.46968 * 329.99883 * 8 6 4 12 12 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 274.72131 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 H 1.09001 * 109.86557 * 304.30753 * 15 13 12 17 17 C 1.54097 * 109.87614 * 65.30626 * 15 13 12 18 18 C 1.54814 * 104.18754 * 121.45715 * 17 15 13 19 19 C 1.54997 * 102.08998 * 20.88033 * 18 17 15 20 20 H 1.08997 * 110.61526 * 81.47680 * 19 18 17 21 21 C 1.52997 * 110.61558 * 204.31712 * 19 18 17 22 22 C 1.53004 * 109.46978 * 185.00001 * 21 19 18 23 23 C 1.50700 * 109.47111 * 180.02562 * 22 21 19 24 24 O 1.20824 * 119.99790 * 359.97438 * 23 22 21 25 25 O 1.34230 * 120.00250 * 180.02562 * 23 22 21 26 26 O 1.43742 * 109.88093 * 183.29442 * 15 13 12 27 27 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 28 28 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 29 29 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 30 30 H 0.96995 * 120.00431 * 179.97438 * 7 6 4 31 31 H 0.97001 * 120.00384 * 95.00578 * 12 2 1 32 32 H 1.09000 * 110.49040 * 240.13476 * 17 15 13 33 33 H 1.08997 * 110.48999 * 2.78285 * 17 15 13 34 34 H 1.08996 * 110.90671 * 139.07966 * 18 17 15 35 35 H 1.08997 * 110.90901 * 262.64692 * 18 17 15 36 36 H 1.08998 * 109.47751 * 304.99998 * 21 19 18 37 37 H 1.09001 * 109.47500 * 65.00595 * 21 19 18 38 38 H 1.09002 * 109.46989 * 300.00026 * 22 21 19 39 39 H 1.08994 * 109.46841 * 60.00115 * 22 21 19 40 40 H 0.96691 * 117.00229 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3428 -2.1618 -4.4119 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.1523 -0.0169 2.3557 14 8 1.8638 1.1599 2.4102 15 6 2.6605 -0.7257 3.5847 16 1 2.0373 -1.5948 3.7954 17 6 4.1207 -1.1682 3.3681 18 6 4.9015 -0.4710 4.5087 19 6 3.7793 -0.1727 5.5354 20 1 3.5614 -1.0574 6.1336 21 6 4.1704 1.0013 6.4351 22 6 3.1040 1.1933 7.5153 23 6 3.4889 2.3501 8.4012 24 8 4.5115 2.9582 8.1905 25 8 2.6963 2.7043 9.4249 26 8 2.6447 0.1711 4.7079 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7094 1.1618 -3.4844 31 1 2.2491 -1.6318 1.1526 32 1 4.2076 -2.2514 3.4528 33 1 4.4816 -0.8303 2.3967 34 1 5.6496 -1.1403 4.9336 35 1 5.3629 0.4517 4.1569 36 1 5.1313 0.7939 6.9060 37 1 4.2479 1.9084 5.8357 38 1 2.1431 1.4009 7.0444 39 1 3.0266 0.2863 8.1147 40 1 2.9847 3.4527 9.9649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:57 Heat of formation + Delta-G solvation = -191.000125 kcal Electronic energy + Delta-G solvation = -22542.520390 eV Core-core repulsion = 18935.707559 eV Total energy + Delta-G solvation = -3606.812832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51941 -39.94547 -38.05586 -36.42115 -34.76151 -33.87088 -32.60611 -31.92650 -29.83593 -28.30689 -25.47509 -25.20920 -22.70682 -21.47861 -21.00047 -20.74550 -19.39515 -18.31354 -17.48634 -16.97149 -16.50931 -16.25718 -15.76736 -15.63146 -15.04998 -14.53551 -13.90930 -13.82708 -13.65223 -13.47373 -13.36700 -13.01726 -12.42471 -12.08276 -11.82730 -11.77782 -11.72884 -11.57787 -11.25573 -11.13916 -11.07894 -10.97090 -10.85005 -10.73058 -10.70533 -10.32127 -10.23909 -9.90420 -9.04769 -8.80253 -8.54985 -7.90892 -6.12625 -4.22269 1.99539 2.81127 3.23507 3.30154 3.31298 3.32253 3.52938 4.19894 4.35992 4.45344 4.56828 4.75359 4.82173 4.84441 5.08597 5.09771 5.19491 5.25565 5.36722 5.45663 5.54244 5.61485 5.69323 5.79080 5.88545 6.03022 6.06631 6.27389 6.80345 6.87246 6.97956 7.15889 7.45995 7.57057 7.65836 7.69434 7.91892 8.15017 8.65767 8.78326 9.13311 9.45421 10.93350 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032901 B = 0.003028 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.833032 B = 9244.755098 C = 9610.738997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.708 5.708 13 C 0.500 3.500 14 O -0.535 6.535 15 C 0.060 3.940 16 H 0.088 0.912 17 C -0.147 4.147 18 C -0.147 4.147 19 C 0.072 3.928 20 H 0.074 0.926 21 C -0.102 4.102 22 C -0.113 4.113 23 C 0.479 3.521 24 O -0.518 6.518 25 O -0.519 6.519 26 O -0.343 6.343 27 H 0.015 0.985 28 H 0.090 0.910 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.819 -5.012 19.619 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.358 5.358 13 C 0.283 3.717 14 O -0.412 6.412 15 C -0.002 4.002 16 H 0.106 0.894 17 C -0.185 4.185 18 C -0.185 4.185 19 C 0.015 3.985 20 H 0.092 0.908 21 C -0.139 4.139 22 C -0.151 4.151 23 C 0.322 3.678 24 O -0.406 6.406 25 O -0.331 6.331 26 O -0.261 6.261 27 H 0.034 0.966 28 H 0.109 0.891 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.509 -4.010 19.225 20.397 hybrid contribution 0.647 -0.610 -0.585 1.065 sum 6.156 -4.620 18.640 20.167 Atomic orbital electron populations 1.22085 0.98469 0.99124 1.00950 1.18741 0.91035 0.93982 0.79819 0.93388 1.21207 1.32503 1.13208 0.90298 0.92068 1.24898 0.94837 0.94945 0.99072 1.69905 1.35853 1.22371 1.23903 0.86443 0.79130 0.79263 0.82217 1.20546 1.21071 1.19872 1.46465 1.65464 1.13444 1.10378 1.20247 0.79245 0.87748 0.84426 1.90676 1.50011 1.15873 1.84677 1.22680 0.97341 0.92708 0.87479 0.89408 1.22928 0.93314 1.01305 1.00944 1.23136 0.98013 1.01830 0.95481 1.23213 0.86114 0.96800 0.92423 0.90831 1.21469 0.97585 0.99492 0.95382 1.21398 1.03041 0.94898 0.95734 1.23654 0.80683 0.84625 0.78819 1.90729 1.25903 1.53738 1.70232 1.84553 1.53642 1.52785 1.42148 1.89049 1.46643 1.56708 1.33699 0.96621 0.89129 0.95445 0.92548 0.77992 0.89818 0.89382 0.89929 0.89962 0.89623 0.89581 0.86581 0.87675 0.73299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 2 C 0.27 6.79 2.56 -69.08 -0.18 6.61 16 3 H 0.05 1.43 7.57 -51.93 -0.39 1.03 16 4 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.71 -14.61 5.05 -54.93 -0.28 -14.89 16 13 C 0.50 10.20 6.92 -10.98 -0.08 10.13 16 14 O -0.54 -13.56 16.19 -14.02 -0.23 -13.79 16 15 C 0.06 0.88 3.84 -27.31 -0.10 0.78 16 16 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 17 C -0.15 -1.71 6.62 -25.20 -0.17 -1.88 16 18 C -0.15 -1.51 6.59 -24.72 -0.16 -1.67 16 19 C 0.07 0.77 3.28 -25.68 -0.08 0.68 16 20 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 21 C -0.10 -1.03 4.27 -26.73 -0.11 -1.15 16 22 C -0.11 -1.01 5.76 -27.88 -0.16 -1.17 16 23 C 0.48 4.86 8.33 36.01 0.30 5.16 16 24 O -0.52 -6.88 16.74 -18.75 -0.31 -7.20 16 25 O -0.52 -4.09 13.42 -39.26 -0.53 -4.61 16 26 O -0.34 -5.26 10.32 -54.80 -0.57 -5.82 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 29 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 6.75 8.54 -40.82 -0.35 6.40 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.18 7.69 -51.93 -0.40 0.78 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 36 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.12 1.13 8.06 -51.93 -0.42 0.71 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.41 1.54 9.10 45.56 0.41 1.95 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -34.88 339.68 -7.20 -42.08 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.22 Total: 6.49 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -0.80 Total: 1.45 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.35 Total: -39.20 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -1.63 Total: -31.42 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.88 -7.20 -42.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.918 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds