Wall clock time and date at job start Tue Mar 31 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 5 5 H 1.07995 * 120.00006 * 240.00415 * 4 2 1 6 6 C 1.37875 * 120.00190 * 59.99565 * 4 2 1 7 7 N 1.31520 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47255 * 90.00191 * 8 6 4 10 10 H 1.48503 * 109.46900 * 210.00227 * 8 6 4 11 11 H 1.48494 * 109.46968 * 329.99883 * 8 6 4 12 12 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 274.72131 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 H 1.09001 * 109.86557 * 304.30753 * 15 13 12 17 17 C 1.54097 * 109.87614 * 65.30626 * 15 13 12 18 18 C 1.54814 * 104.18754 * 121.45715 * 17 15 13 19 19 C 1.54997 * 102.08998 * 20.88033 * 18 17 15 20 20 H 1.08997 * 110.61526 * 81.47680 * 19 18 17 21 21 C 1.52997 * 110.61558 * 204.31712 * 19 18 17 22 22 C 1.53004 * 109.46978 * 185.00001 * 21 19 18 23 23 C 1.50700 * 109.47111 * 180.02562 * 22 21 19 24 24 O 1.20824 * 119.99790 * 359.97438 * 23 22 21 25 25 O 1.34230 * 120.00250 * 180.02562 * 23 22 21 26 26 O 1.43742 * 109.88093 * 183.29442 * 15 13 12 27 27 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 28 28 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 29 29 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 30 30 H 0.96995 * 120.00431 * 179.97438 * 7 6 4 31 31 H 0.97001 * 120.00384 * 95.00578 * 12 2 1 32 32 H 1.09000 * 110.49040 * 240.13476 * 17 15 13 33 33 H 1.08997 * 110.48999 * 2.78285 * 17 15 13 34 34 H 1.08996 * 110.90671 * 139.07966 * 18 17 15 35 35 H 1.08997 * 110.90901 * 262.64692 * 18 17 15 36 36 H 1.08998 * 109.47751 * 304.99998 * 21 19 18 37 37 H 1.09001 * 109.47500 * 65.00595 * 21 19 18 38 38 H 1.09002 * 109.46989 * 300.00026 * 22 21 19 39 39 H 1.08994 * 109.46841 * 60.00115 * 22 21 19 40 40 H 0.96691 * 117.00229 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3428 -2.1618 -4.4119 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.1523 -0.0169 2.3557 14 8 1.8638 1.1599 2.4102 15 6 2.6605 -0.7257 3.5847 16 1 2.0373 -1.5948 3.7954 17 6 4.1207 -1.1682 3.3681 18 6 4.9015 -0.4710 4.5087 19 6 3.7793 -0.1727 5.5354 20 1 3.5614 -1.0574 6.1336 21 6 4.1704 1.0013 6.4351 22 6 3.1040 1.1933 7.5153 23 6 3.4889 2.3501 8.4012 24 8 4.5115 2.9582 8.1905 25 8 2.6963 2.7043 9.4249 26 8 2.6447 0.1711 4.7079 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7094 1.1618 -3.4844 31 1 2.2491 -1.6318 1.1526 32 1 4.2076 -2.2514 3.4528 33 1 4.4816 -0.8303 2.3967 34 1 5.6496 -1.1403 4.9336 35 1 5.3629 0.4517 4.1569 36 1 5.1313 0.7939 6.9060 37 1 4.2479 1.9084 5.8357 38 1 2.1431 1.4009 7.0444 39 1 3.0266 0.2863 8.1147 40 1 2.9847 3.4527 9.9649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:57 Heat of formation + Delta-G solvation = -216.916634 kcal Electronic energy + Delta-G solvation = -22543.644214 eV Core-core repulsion = 18935.707559 eV Total energy + Delta-G solvation = -3607.936656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.41466 -41.09087 -39.50768 -37.17604 -36.68144 -34.77711 -34.37613 -33.08012 -31.33020 -29.67585 -27.35688 -26.44808 -23.83256 -22.66447 -22.31180 -21.54686 -21.11720 -19.20966 -18.98125 -17.84214 -17.66232 -17.38568 -17.19277 -16.94603 -16.56508 -16.09850 -15.25920 -15.12240 -14.69184 -14.51268 -14.38318 -14.33809 -14.15956 -13.69214 -13.04479 -12.96219 -12.89662 -12.75981 -12.67030 -12.56812 -12.50288 -12.29881 -12.15079 -12.04408 -11.95573 -11.75830 -11.56614 -11.11398 -10.99740 -10.62424 -10.31199 -9.76909 -8.17457 -6.35618 1.21602 1.45453 1.46577 1.57096 1.77004 2.16223 2.19347 2.45354 3.06807 3.13593 3.54685 3.71014 3.87791 3.92610 4.08093 4.11555 4.29880 4.33730 4.54114 4.59243 4.71252 4.73515 4.78427 4.90794 4.93355 5.00449 5.05467 5.08587 5.13870 5.26277 5.41903 5.60218 5.63165 5.66909 5.84586 5.98527 6.08867 6.72474 6.96612 6.99748 7.32298 7.55987 8.89111 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032901 B = 0.003028 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.833032 B = 9244.755098 C = 9610.738997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H -0.007 1.007 4 C -0.545 4.545 5 H 0.078 0.922 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.975 3.025 9 H -0.270 1.270 10 H -0.289 1.289 11 H -0.261 1.261 12 N -0.699 5.699 13 C 0.491 3.509 14 O -0.596 6.596 15 C 0.068 3.932 16 H 0.125 0.875 17 C -0.142 4.142 18 C -0.146 4.146 19 C 0.071 3.929 20 H 0.114 0.886 21 C -0.100 4.100 22 C -0.111 4.111 23 C 0.483 3.517 24 O -0.557 6.557 25 O -0.515 6.515 26 O -0.378 6.378 27 H 0.008 0.992 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.265 0.735 31 H 0.408 0.592 32 H 0.127 0.873 33 H 0.063 0.937 34 H 0.121 0.879 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.048 0.952 38 H 0.105 0.895 39 H 0.141 0.859 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 -8.397 20.917 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.011 0.989 4 C -0.583 4.583 5 H 0.096 0.904 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.195 1.195 10 H -0.215 1.215 11 H -0.186 1.186 12 N -0.350 5.350 13 C 0.278 3.722 14 O -0.477 6.477 15 C 0.007 3.993 16 H 0.142 0.858 17 C -0.180 4.180 18 C -0.183 4.183 19 C 0.014 3.986 20 H 0.132 0.868 21 C -0.137 4.137 22 C -0.148 4.148 23 C 0.328 3.672 24 O -0.448 6.448 25 O -0.328 6.328 26 O -0.297 6.297 27 H 0.027 0.973 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.243 0.757 32 H 0.145 0.855 33 H 0.082 0.918 34 H 0.139 0.861 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.066 0.934 38 H 0.124 0.876 39 H 0.159 0.841 40 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 6.551 -7.440 20.568 22.833 hybrid contribution 0.305 0.532 -0.899 1.088 sum 6.856 -6.908 19.669 21.945 Atomic orbital electron populations 1.21910 0.98386 0.99633 0.99406 1.18329 0.91092 0.91783 0.82047 0.98932 1.21544 1.32591 1.13577 0.90560 0.90431 1.25861 0.94892 0.95572 1.02518 1.70070 1.37131 1.24018 1.24622 0.85296 0.79073 0.77954 0.77713 1.19514 1.21482 1.18554 1.46169 1.65207 1.14209 1.09403 1.21444 0.77693 0.87246 0.85854 1.90643 1.52483 1.18804 1.85774 1.22718 0.99695 0.92344 0.84528 0.85802 1.22989 0.90915 1.03908 1.00193 1.23186 0.98557 1.01544 0.95012 1.23533 0.84745 0.98098 0.92223 0.86797 1.21440 0.98987 0.97948 0.95371 1.21429 1.01794 0.95980 0.95572 1.23890 0.80058 0.84385 0.78902 1.90720 1.27676 1.55075 1.71355 1.84515 1.53017 1.53591 1.41715 1.89031 1.48665 1.57766 1.34215 0.97294 0.91515 0.93667 0.92580 0.75691 0.85471 0.91798 0.86073 0.92369 0.87904 0.93354 0.87634 0.84084 0.71268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.97 9.26 71.98 0.67 -6.31 16 2 C 0.27 14.28 2.56 44.24 0.11 14.40 16 3 H -0.01 -0.46 7.57 -2.39 -0.02 -0.48 16 4 C -0.54 -28.68 8.73 25.60 0.22 -28.46 16 5 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -53.40 11.32 21.45 0.24 -53.16 16 8 Si 0.98 41.72 29.54 68.60 2.03 43.75 16 9 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 12 N -0.70 -28.93 5.05 -446.09 -2.25 -31.19 16 13 C 0.49 20.34 6.92 87.66 0.61 20.94 16 14 O -0.60 -31.85 16.19 15.67 0.25 -31.59 16 15 C 0.07 1.89 3.84 30.22 0.12 2.00 16 16 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 17 C -0.14 -2.90 6.62 31.58 0.21 -2.69 16 18 C -0.15 -2.59 6.59 31.90 0.21 -2.38 16 19 C 0.07 1.31 3.28 31.28 0.10 1.41 16 20 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 21 C -0.10 -1.91 4.27 30.59 0.13 -1.78 16 22 C -0.11 -1.79 5.76 29.85 0.17 -1.61 16 23 C 0.48 9.37 8.33 71.24 0.59 9.96 16 24 O -0.56 -14.83 16.74 21.97 0.37 -14.47 16 25 O -0.51 -7.35 13.42 -51.41 -0.69 -8.04 16 26 O -0.38 -11.18 10.32 -130.27 -1.34 -12.52 16 27 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 29 H 0.04 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.41 13.52 8.54 -92.71 -0.79 12.73 16 32 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.63 7.69 -2.39 -0.02 1.61 16 34 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 1.31 8.06 -2.39 -0.02 1.29 16 36 H 0.10 1.60 8.10 -2.39 -0.02 1.58 16 37 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 38 H 0.11 1.98 8.06 -2.39 -0.02 1.96 16 39 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.43 2.64 9.10 -74.06 -0.67 1.97 16 Total: -1.00 -81.01 339.68 1.79 -79.21 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -0.40 Total: 21.47 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 3.59 Total: 6.53 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -2.01 Total: -84.34 kcal Atomic # 8 Polarization: -65.21 SS G_CDS: -1.41 Total: -66.62 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -81.01 1.79 -79.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.703 kcal (2) G-P(sol) polarization free energy of solvation -81.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds