Wall clock time and date at job start Tue Mar 31 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46876 * 2 1 4 4 C 1.50699 * 109.47371 * 119.99680 * 2 1 3 5 5 H 1.07999 * 119.99655 * 119.99982 * 4 2 1 6 6 C 1.37872 * 120.00163 * 300.00180 * 4 2 1 7 7 N 1.31515 * 120.00252 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 120.00140 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46991 * 89.99624 * 8 6 4 10 10 H 1.48492 * 109.47319 * 209.99830 * 8 6 4 11 11 H 1.48499 * 109.46921 * 330.00073 * 8 6 4 12 12 N 1.46501 * 109.47061 * 240.00168 * 2 1 3 13 13 C 1.46503 * 119.99737 * 299.99527 * 12 2 1 14 14 C 1.34776 * 120.00032 * 120.00147 * 12 2 1 15 15 O 1.21285 * 119.99757 * 184.94227 * 14 12 2 16 16 C 1.50698 * 120.00185 * 4.93449 * 14 12 2 17 17 H 1.08997 * 110.27414 * 309.25216 * 16 14 12 18 18 C 1.54947 * 110.30473 * 71.44764 * 16 14 12 19 19 C 1.55313 * 100.94104 * 155.36251 * 18 16 14 20 20 H 1.08998 * 110.84789 * 84.04986 * 19 18 16 21 21 C 1.52996 * 110.84690 * 207.67705 * 19 18 16 22 22 C 1.54388 * 102.24827 * 325.86534 * 19 18 16 23 23 H 1.08998 * 109.82711 * 261.84372 * 22 19 18 24 24 C 1.50693 * 109.90381 * 140.91787 * 22 19 18 25 25 O 1.20827 * 120.00042 * 245.23113 * 24 22 19 26 26 O 1.34227 * 120.00257 * 65.23110 * 24 22 19 27 27 O 1.43234 * 107.58971 * 21.35796 * 22 19 18 28 28 H 1.09003 * 109.46928 * 299.99685 * 1 2 3 29 29 H 1.08993 * 109.46952 * 60.00311 * 1 2 3 30 30 H 1.09004 * 109.46863 * 180.02562 * 1 2 3 31 31 H 0.97004 * 120.00169 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.46997 * 265.66317 * 13 12 2 33 33 H 1.09000 * 109.47130 * 25.66594 * 13 12 2 34 34 H 1.09000 * 109.47041 * 145.66390 * 13 12 2 35 35 H 1.09004 * 111.12323 * 273.27698 * 18 16 14 36 36 H 1.08996 * 111.12711 * 37.39614 * 18 16 14 37 37 H 1.08994 * 109.47331 * 174.28271 * 21 19 18 38 38 H 1.09008 * 109.47075 * 294.28461 * 21 19 18 39 39 H 1.09004 * 109.47318 * 54.27938 * 21 19 18 40 40 H 0.96699 * 117.00337 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 2.1374 -0.8594 3.5565 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8745 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1774 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1234 -0.5780 -3.1167 16 6 3.2493 1.3708 -1.7914 17 1 2.3995 1.9927 -1.5103 18 6 4.3128 1.3682 -0.6646 19 6 5.0706 2.6887 -0.9714 20 1 4.5583 3.5421 -0.5273 21 6 6.5200 2.6096 -0.4880 22 6 5.0081 2.7517 -2.5128 23 1 5.9403 2.3778 -2.9361 24 6 4.7776 4.1724 -2.9593 25 8 3.7517 4.4691 -3.5244 26 8 5.7119 5.1082 -2.7291 27 8 3.9167 1.9262 -2.9358 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9034 -0.5278 4.4376 32 1 2.4542 -2.7362 -1.0393 33 1 0.7276 -2.3204 -0.9193 34 1 1.5483 -2.2666 -2.4978 35 1 3.8434 1.4040 0.3186 36 1 4.9740 0.5059 -0.7504 37 1 7.0575 3.5038 -0.8034 38 1 6.5370 2.5401 0.5997 39 1 6.9982 1.7284 -0.9158 40 1 5.5189 6.0055 -3.0336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:40 Heat of formation + Delta-G solvation = -159.916927 kcal Electronic energy + Delta-G solvation = -24192.466448 eV Core-core repulsion = 20587.001484 eV Total energy + Delta-G solvation = -3605.464963 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.91564 -39.67603 -38.20400 -36.16737 -35.84521 -33.65278 -32.66414 -30.84127 -30.20112 -27.42255 -26.58263 -25.33396 -23.84708 -21.86232 -21.35125 -20.83614 -18.46794 -18.34533 -17.53380 -16.98071 -16.59442 -15.99028 -15.78097 -15.18354 -15.12220 -14.73364 -14.20838 -13.73066 -13.61171 -13.17998 -13.11351 -12.99773 -12.42822 -12.41058 -12.35439 -11.96491 -11.78660 -11.64084 -11.49568 -11.44255 -11.26646 -11.14293 -10.84499 -10.75774 -10.60512 -10.31227 -9.87930 -9.77096 -9.53161 -9.01134 -8.79629 -7.84424 -6.31786 -4.34738 2.08522 2.61124 3.07822 3.10625 3.16271 3.21890 3.44492 4.06350 4.15351 4.31695 4.69991 4.78495 4.95560 5.00583 5.11513 5.17064 5.30391 5.37381 5.56116 5.76450 5.83572 5.88377 6.04327 6.07509 6.11129 6.16747 6.19962 6.24923 6.28691 6.35123 6.44096 6.52170 6.75412 6.82199 7.18591 7.44264 7.80304 7.96449 8.36074 8.69843 8.78643 9.27503 10.80387 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.006214 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.247934 B = 4505.142333 C = 5172.858952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.223 3.777 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.083 0.917 6 C 0.079 3.921 7 N -0.887 5.887 8 Si 0.878 3.122 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.266 1.266 12 N -0.582 5.582 13 C 0.099 3.901 14 C 0.516 3.484 15 O -0.548 6.548 16 C 0.062 3.938 17 H 0.096 0.904 18 C -0.135 4.135 19 C -0.112 4.112 20 H 0.091 0.909 21 C -0.141 4.141 22 C 0.094 3.906 23 H 0.123 0.877 24 C 0.465 3.535 25 O -0.498 6.498 26 O -0.514 6.514 27 O -0.324 6.324 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.268 0.732 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.716 8.746 -6.215 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.120 3.880 3 H 0.066 0.934 4 C -0.569 4.569 5 H 0.101 0.899 6 C -0.125 4.125 7 N -0.524 5.524 8 Si 0.707 3.293 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.191 1.191 12 N -0.314 5.314 13 C -0.044 4.044 14 C 0.302 3.698 15 O -0.426 6.426 16 C 0.002 3.998 17 H 0.114 0.886 18 C -0.173 4.173 19 C -0.130 4.130 20 H 0.110 0.890 21 C -0.198 4.198 22 C 0.034 3.966 23 H 0.140 0.860 24 C 0.306 3.694 25 O -0.384 6.384 26 O -0.327 6.327 27 O -0.241 6.241 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.133 0.867 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.608 8.076 -6.783 11.944 hybrid contribution -0.931 1.510 0.359 1.810 sum 4.677 9.586 -6.424 12.451 Atomic orbital electron populations 1.22515 0.98762 1.01810 0.99443 1.19513 0.90800 0.93712 0.83929 0.93385 1.21132 1.33072 1.14705 0.88019 0.89854 1.24876 0.95394 0.96510 0.95680 1.69863 1.44596 1.39812 0.98079 0.87023 0.81133 0.83675 0.77439 1.20172 1.21975 1.19112 1.47797 1.48699 1.12172 1.22745 1.21420 1.00903 0.81482 1.00584 1.19999 0.79131 0.87108 0.83541 1.90641 1.57202 1.69042 1.25737 1.22962 0.96937 0.93863 0.86041 0.88609 1.23418 0.96623 0.97135 1.00110 1.22685 0.99255 0.99708 0.91386 0.89030 1.21737 0.93197 1.02589 1.02294 1.22348 0.93052 0.84738 0.96484 0.85979 1.24007 0.80862 0.88640 0.75890 1.90737 1.27777 1.81709 1.38212 1.84515 1.48417 1.22916 1.76813 1.88613 1.44566 1.62018 1.28908 0.93000 0.94516 0.91981 0.92220 0.93013 0.90808 0.92157 0.86656 0.88948 0.91551 0.91139 0.91775 0.73261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 8.66 37.16 0.32 -2.97 16 2 C 0.22 4.67 1.67 -69.08 -0.12 4.55 16 3 H 0.05 0.99 3.65 -51.92 -0.19 0.80 16 4 C -0.53 -12.97 8.95 -34.44 -0.31 -13.28 16 5 H 0.08 2.27 7.89 -52.49 -0.41 1.85 16 6 C 0.08 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.89 -24.42 13.96 55.43 0.77 -23.65 16 8 Si 0.88 19.35 24.37 -169.99 -4.14 15.21 16 9 H -0.27 -6.01 6.87 56.52 0.39 -5.62 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -5.49 6.53 56.52 0.37 -5.12 16 12 N -0.58 -11.76 2.75 -175.25 -0.48 -12.25 16 13 C 0.10 1.82 9.64 59.85 0.58 2.39 16 14 C 0.52 10.64 7.02 -10.99 -0.08 10.56 16 15 O -0.55 -12.68 16.18 -13.68 -0.22 -12.90 16 16 C 0.06 1.12 2.87 -26.86 -0.08 1.05 16 17 H 0.10 1.70 7.08 -51.93 -0.37 1.33 16 18 C -0.14 -2.11 5.50 -24.48 -0.13 -2.24 16 19 C -0.11 -1.40 3.11 -88.67 -0.28 -1.67 16 20 H 0.09 1.10 7.85 -51.93 -0.41 0.69 16 21 C -0.14 -1.41 9.14 37.16 0.34 -1.07 16 22 C 0.09 1.30 3.66 -27.16 -0.10 1.20 16 23 H 0.12 1.44 7.81 -51.93 -0.41 1.03 16 24 C 0.47 6.31 7.52 36.00 0.27 6.58 16 25 O -0.50 -8.63 17.28 -25.41 -0.44 -9.07 16 26 O -0.51 -4.85 13.42 -39.25 -0.53 -5.38 16 27 O -0.32 -5.92 9.82 -64.41 -0.63 -6.55 16 28 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.17 6.66 -51.93 -0.35 0.83 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.27 6.43 -51.93 -0.33 0.94 16 34 H 0.06 1.06 7.49 -51.93 -0.39 0.67 16 35 H 0.12 1.92 7.03 -51.93 -0.37 1.55 16 36 H 0.09 1.46 7.93 -51.93 -0.41 1.05 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 40 H 0.41 2.12 9.10 45.56 0.41 2.53 16 LS Contribution 322.70 15.07 4.86 4.86 Total: -1.00 -32.27 322.70 -5.16 -37.43 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.68 Total: 5.27 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 0.32 Total: 7.02 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.29 Total: -35.89 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.82 Total: -33.91 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.14 Total: 15.21 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.27 -5.16 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.486 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds