Wall clock time and date at job start Tue Mar 31 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46876 * 2 1 4 4 C 1.50699 * 109.47371 * 119.99680 * 2 1 3 5 5 H 1.07999 * 119.99655 * 119.99982 * 4 2 1 6 6 C 1.37872 * 120.00163 * 300.00180 * 4 2 1 7 7 N 1.31515 * 120.00252 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 120.00140 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46991 * 89.99624 * 8 6 4 10 10 H 1.48492 * 109.47319 * 209.99830 * 8 6 4 11 11 H 1.48499 * 109.46921 * 330.00073 * 8 6 4 12 12 N 1.46501 * 109.47061 * 240.00168 * 2 1 3 13 13 C 1.46503 * 119.99737 * 299.99527 * 12 2 1 14 14 C 1.34776 * 120.00032 * 120.00147 * 12 2 1 15 15 O 1.21285 * 119.99757 * 184.94227 * 14 12 2 16 16 C 1.50698 * 120.00185 * 4.93449 * 14 12 2 17 17 H 1.08997 * 110.27414 * 309.25216 * 16 14 12 18 18 C 1.54947 * 110.30473 * 71.44764 * 16 14 12 19 19 C 1.55313 * 100.94104 * 155.36251 * 18 16 14 20 20 H 1.08998 * 110.84789 * 84.04986 * 19 18 16 21 21 C 1.52996 * 110.84690 * 207.67705 * 19 18 16 22 22 C 1.54388 * 102.24827 * 325.86534 * 19 18 16 23 23 H 1.08998 * 109.82711 * 261.84372 * 22 19 18 24 24 C 1.50693 * 109.90381 * 140.91787 * 22 19 18 25 25 O 1.20827 * 120.00042 * 245.23113 * 24 22 19 26 26 O 1.34227 * 120.00257 * 65.23110 * 24 22 19 27 27 O 1.43234 * 107.58971 * 21.35796 * 22 19 18 28 28 H 1.09003 * 109.46928 * 299.99685 * 1 2 3 29 29 H 1.08993 * 109.46952 * 60.00311 * 1 2 3 30 30 H 1.09004 * 109.46863 * 180.02562 * 1 2 3 31 31 H 0.97004 * 120.00169 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.46997 * 265.66317 * 13 12 2 33 33 H 1.09000 * 109.47130 * 25.66594 * 13 12 2 34 34 H 1.09000 * 109.47041 * 145.66390 * 13 12 2 35 35 H 1.09004 * 111.12323 * 273.27698 * 18 16 14 36 36 H 1.08996 * 111.12711 * 37.39614 * 18 16 14 37 37 H 1.08994 * 109.47331 * 174.28271 * 21 19 18 38 38 H 1.09008 * 109.47075 * 294.28461 * 21 19 18 39 39 H 1.09004 * 109.47318 * 54.27938 * 21 19 18 40 40 H 0.96699 * 117.00337 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 2.1374 -0.8594 3.5565 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8745 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1774 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1234 -0.5780 -3.1167 16 6 3.2493 1.3708 -1.7914 17 1 2.3995 1.9927 -1.5103 18 6 4.3128 1.3682 -0.6646 19 6 5.0706 2.6887 -0.9714 20 1 4.5583 3.5421 -0.5273 21 6 6.5200 2.6096 -0.4880 22 6 5.0081 2.7517 -2.5128 23 1 5.9403 2.3778 -2.9361 24 6 4.7776 4.1724 -2.9593 25 8 3.7517 4.4691 -3.5244 26 8 5.7119 5.1082 -2.7291 27 8 3.9167 1.9262 -2.9358 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9034 -0.5278 4.4376 32 1 2.4542 -2.7362 -1.0393 33 1 0.7276 -2.3204 -0.9193 34 1 1.5483 -2.2666 -2.4978 35 1 3.8434 1.4040 0.3186 36 1 4.9740 0.5059 -0.7504 37 1 7.0575 3.5038 -0.8034 38 1 6.5370 2.5401 0.5997 39 1 6.9982 1.7284 -0.9158 40 1 5.5189 6.0055 -3.0336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:39 Heat of formation + Delta-G solvation = -182.514768 kcal Electronic energy + Delta-G solvation = -24193.446363 eV Core-core repulsion = 20587.001484 eV Total energy + Delta-G solvation = -3606.444879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.11494 -41.00492 -39.54764 -37.55212 -37.14283 -34.77883 -34.54390 -32.15817 -31.91843 -28.53463 -27.89567 -27.16659 -25.17553 -23.39529 -22.58026 -21.92261 -19.92918 -19.53731 -18.98908 -18.37237 -18.06279 -17.46647 -16.94901 -16.73939 -16.57590 -16.08301 -15.65418 -15.16937 -14.86608 -14.74215 -14.37740 -14.11927 -14.05662 -13.90893 -13.60487 -13.36693 -13.14905 -13.01500 -12.99792 -12.64378 -12.54186 -12.43420 -12.16411 -12.07130 -11.91352 -11.76004 -11.51625 -11.37562 -11.04925 -10.79196 -10.51689 -9.52098 -8.28538 -6.35320 1.04977 1.35315 1.39796 1.48114 1.48871 1.57387 2.10281 2.31224 2.77510 3.05361 3.12818 3.48957 3.65514 3.79445 3.89933 4.02161 4.23918 4.28227 4.39981 4.47741 4.52291 4.55784 4.63895 4.72367 4.77036 4.87402 4.91840 4.95592 5.03627 5.10741 5.23586 5.37440 5.39353 5.48552 5.58540 5.74949 6.12686 6.59393 6.70183 6.93376 7.12385 7.31972 8.87048 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.006214 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.247934 B = 4505.142333 C = 5172.858952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.226 3.774 3 H 0.060 0.940 4 C -0.521 4.521 5 H 0.044 0.956 6 C 0.032 3.968 7 N -0.936 5.936 8 Si 0.929 3.071 9 H -0.268 1.268 10 H -0.297 1.297 11 H -0.239 1.239 12 N -0.585 5.585 13 C 0.097 3.903 14 C 0.511 3.489 15 O -0.578 6.578 16 C 0.063 3.937 17 H 0.101 0.899 18 C -0.132 4.132 19 C -0.099 4.099 20 H 0.101 0.899 21 C -0.137 4.137 22 C 0.084 3.916 23 H 0.144 0.856 24 C 0.477 3.523 25 O -0.542 6.542 26 O -0.496 6.496 27 O -0.351 6.351 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.268 0.732 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.858 10.973 -6.587 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.123 3.877 3 H 0.077 0.923 4 C -0.560 4.560 5 H 0.062 0.938 6 C -0.167 4.167 7 N -0.575 5.575 8 Si 0.756 3.244 9 H -0.194 1.194 10 H -0.225 1.225 11 H -0.163 1.163 12 N -0.316 5.316 13 C -0.045 4.045 14 C 0.298 3.702 15 O -0.459 6.459 16 C 0.003 3.997 17 H 0.118 0.882 18 C -0.170 4.170 19 C -0.117 4.117 20 H 0.119 0.881 21 C -0.194 4.194 22 C 0.025 3.975 23 H 0.161 0.839 24 C 0.320 3.680 25 O -0.432 6.432 26 O -0.310 6.310 27 O -0.269 6.269 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 5.770 10.328 -7.166 13.832 hybrid contribution -0.861 0.768 0.439 1.234 sum 4.909 11.096 -6.727 13.873 Atomic orbital electron populations 1.22466 0.97109 1.02484 1.00424 1.19431 0.91963 0.93701 0.82566 0.92288 1.21181 1.31863 1.13336 0.89591 0.93795 1.25562 0.96662 0.99338 0.95180 1.70001 1.46756 1.41983 0.98714 0.86160 0.79566 0.80607 0.78053 1.19414 1.22503 1.16292 1.47871 1.48581 1.12738 1.22408 1.21492 1.01140 0.80750 1.01159 1.20523 0.78464 0.88182 0.82984 1.90613 1.58238 1.70095 1.26960 1.22929 0.97816 0.92088 0.86903 0.88153 1.23354 0.96229 0.98836 0.98565 1.22672 1.00584 0.98020 0.90457 0.88061 1.21750 0.91460 1.03768 1.02438 1.22647 0.92539 0.84836 0.97479 0.83860 1.23799 0.80469 0.88931 0.74816 1.90732 1.29653 1.82408 1.40383 1.84452 1.46618 1.23877 1.76013 1.88573 1.45870 1.62980 1.29507 0.93193 0.92202 0.91669 0.92272 0.93793 0.89684 0.91432 0.87746 0.89727 0.89475 0.90872 0.91536 0.70684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.16 8.66 71.98 0.62 -5.53 16 2 C 0.23 9.20 1.67 44.25 0.07 9.28 16 3 H 0.06 2.31 3.65 -2.38 -0.01 2.30 16 4 C -0.52 -25.59 8.95 25.60 0.23 -25.36 16 5 H 0.04 2.47 7.89 -2.91 -0.02 2.44 16 6 C 0.03 1.64 5.45 84.65 0.46 2.10 16 7 N -0.94 -52.40 13.96 21.45 0.30 -52.10 16 8 Si 0.93 38.54 24.37 68.60 1.67 40.22 16 9 H -0.27 -10.80 6.87 99.48 0.68 -10.12 16 10 H -0.30 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.24 -8.83 6.53 99.48 0.65 -8.18 16 12 N -0.58 -23.39 2.75 -826.77 -2.28 -25.66 16 13 C 0.10 3.56 9.64 127.77 1.23 4.79 16 14 C 0.51 20.94 7.02 87.66 0.62 21.56 16 15 O -0.58 -26.90 16.18 15.35 0.25 -26.65 16 16 C 0.06 2.22 2.87 30.51 0.09 2.30 16 17 H 0.10 3.41 7.08 -2.39 -0.02 3.39 16 18 C -0.13 -3.99 5.50 32.05 0.18 -3.81 16 19 C -0.10 -2.24 3.11 -9.53 -0.03 -2.27 16 20 H 0.10 2.12 7.85 -2.39 -0.02 2.10 16 21 C -0.14 -2.34 9.14 71.98 0.66 -1.68 16 22 C 0.08 2.16 3.66 30.32 0.11 2.27 16 23 H 0.14 3.01 7.81 -2.39 -0.02 2.99 16 24 C 0.48 11.79 7.52 71.23 0.54 12.33 16 25 O -0.54 -18.00 17.28 28.32 0.49 -17.51 16 26 O -0.50 -7.56 13.42 -51.39 -0.69 -8.25 16 27 O -0.35 -12.54 9.82 -121.08 -1.19 -13.73 16 28 H 0.05 1.87 3.27 -2.39 -0.01 1.86 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 2.34 6.66 -2.39 -0.02 2.32 16 31 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 2.89 6.43 -2.39 -0.02 2.87 16 34 H 0.07 2.37 7.49 -2.39 -0.02 2.35 16 35 H 0.10 3.38 7.03 -2.39 -0.02 3.37 16 36 H 0.08 2.66 7.93 -2.39 -0.02 2.64 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 40 H 0.43 2.87 9.10 -74.06 -0.67 2.20 16 Total: -1.00 -70.24 322.70 3.65 -66.59 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.32 Total: 21.12 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 4.77 Total: 15.97 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -1.98 Total: -77.77 kcal Atomic # 8 Polarization: -65.00 SS G_CDS: -1.14 Total: -66.14 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 1.67 Total: 40.22 kcal Total: -70.24 3.65 -66.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.920 kcal (2) G-P(sol) polarization free energy of solvation -70.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds