Wall clock time and date at job start Tue Mar 31 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 13 13 C 1.46497 * 119.99968 * 59.99779 * 12 2 1 14 14 C 1.34774 * 119.99744 * 239.99606 * 12 2 1 15 15 O 1.21283 * 120.00281 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99876 * 179.97438 * 14 12 2 17 17 H 1.08997 * 110.27760 * 305.63884 * 16 14 12 18 18 C 1.54947 * 110.31092 * 67.83452 * 16 14 12 19 19 C 1.55309 * 100.94462 * 155.36015 * 18 16 14 20 20 H 1.09005 * 110.84262 * 84.05640 * 19 18 16 21 21 C 1.52995 * 110.84664 * 207.67584 * 19 18 16 22 22 C 1.54383 * 102.25229 * 325.86704 * 19 18 16 23 23 H 1.08993 * 109.83276 * 261.84344 * 22 19 18 24 24 C 1.50700 * 109.90666 * 140.90829 * 22 19 18 25 25 O 1.20821 * 120.00445 * 245.37232 * 24 22 19 26 26 O 1.34233 * 119.99692 * 65.36973 * 24 22 19 27 27 O 1.43246 * 107.58696 * 21.35706 * 22 19 18 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47466 * 90.00240 * 13 12 2 33 33 H 1.09002 * 109.47260 * 210.00281 * 13 12 2 34 34 H 1.09000 * 109.47562 * 329.99730 * 13 12 2 35 35 H 1.09005 * 111.12690 * 273.27769 * 18 16 14 36 36 H 1.09000 * 111.12226 * 37.44016 * 18 16 14 37 37 H 1.09007 * 109.46808 * 174.28534 * 21 19 18 38 38 H 1.08997 * 109.47274 * 294.28089 * 21 19 18 39 39 H 1.09000 * 109.47427 * 54.29100 * 21 19 18 40 40 H 0.96694 * 117.00120 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2951 -0.7459 3.3140 17 1 2.4614 -1.1801 3.8659 18 6 4.3144 -1.8452 2.9225 19 6 5.1365 -1.9657 4.2346 20 1 4.6431 -2.6328 4.9416 21 6 6.5623 -2.4376 3.9424 22 6 5.1348 -0.5129 4.7570 23 1 6.0662 -0.0192 4.4799 24 6 4.9794 -0.5068 6.2559 25 8 3.9874 -0.0344 6.7585 26 8 5.9431 -1.0262 7.0327 27 8 4.0272 0.1636 4.1509 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7087 1.1612 -3.4844 32 1 2.4156 -2.7377 0.9717 33 1 1.6237 -2.2852 2.5002 34 1 0.6903 -2.3002 0.9847 35 1 3.8103 -2.7826 2.6874 36 1 4.9431 -1.5206 2.0934 37 1 7.1474 -2.4172 4.8619 38 1 6.5354 -3.4547 3.5514 39 1 7.0199 -1.7771 3.2059 40 1 5.7984 -0.9999 7.9884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:42 Heat of formation + Delta-G solvation = -192.112991 kcal Electronic energy + Delta-G solvation = -23650.684524 eV Core-core repulsion = 20043.823435 eV Total energy + Delta-G solvation = -3606.861089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.06268 -40.91439 -39.50824 -37.15042 -37.13856 -34.97157 -34.64756 -32.42458 -30.60053 -28.24139 -27.70131 -27.28994 -25.73880 -23.10793 -22.48764 -21.72995 -19.98762 -19.44894 -18.64827 -18.34224 -17.94914 -17.38904 -16.97994 -16.78094 -16.31401 -16.17181 -15.57007 -15.02103 -14.68770 -14.45427 -14.34718 -13.99424 -13.95173 -13.49874 -13.36240 -13.16196 -12.96037 -12.91085 -12.71524 -12.64941 -12.63233 -12.44673 -12.17238 -12.13053 -12.10232 -11.88687 -11.72421 -11.18670 -10.99936 -10.55889 -10.37160 -9.36453 -8.12459 -6.29643 1.06180 1.43862 1.46623 1.53797 1.58919 1.68965 2.17700 2.45230 2.84141 3.15611 3.16765 3.54569 3.68766 3.84379 3.95632 4.06425 4.26336 4.41572 4.43532 4.53934 4.68824 4.71347 4.79513 4.87721 4.91709 5.02563 5.04828 5.07667 5.15224 5.41344 5.43776 5.48407 5.56903 5.66786 5.70242 6.03879 6.15873 6.76256 6.78527 6.94388 7.29555 7.45850 8.92126 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028016 B = 0.004190 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.174251 B = 6680.520761 C = 7152.026121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.261 3.739 3 H 0.004 0.996 4 C -0.535 4.535 5 H 0.067 0.933 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.968 3.032 9 H -0.259 1.259 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.592 5.592 13 C 0.075 3.925 14 C 0.494 3.506 15 O -0.596 6.596 16 C 0.067 3.933 17 H 0.117 0.883 18 C -0.133 4.133 19 C -0.093 4.093 20 H 0.113 0.887 21 C -0.139 4.139 22 C 0.079 3.921 23 H 0.133 0.867 24 C 0.478 3.522 25 O -0.544 6.544 26 O -0.496 6.496 27 O -0.361 6.361 28 H 0.016 0.984 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.761 -13.914 15.607 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.159 3.841 3 H 0.022 0.978 4 C -0.574 4.574 5 H 0.086 0.914 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.323 5.323 13 C -0.067 4.067 14 C 0.282 3.718 15 O -0.478 6.478 16 C 0.007 3.993 17 H 0.134 0.866 18 C -0.171 4.171 19 C -0.111 4.111 20 H 0.131 0.869 21 C -0.196 4.196 22 C 0.020 3.980 23 H 0.150 0.850 24 C 0.320 3.680 25 O -0.433 6.433 26 O -0.310 6.310 27 O -0.279 6.279 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.150 0.850 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 9.552 -12.885 15.122 22.045 hybrid contribution -0.228 0.484 -0.348 0.638 sum 9.325 -12.402 14.775 21.425 Atomic orbital electron populations 1.21899 0.97126 1.00379 0.99856 1.18572 0.91644 0.92170 0.81730 0.97812 1.21530 1.31960 1.13141 0.90733 0.91443 1.25784 0.95066 0.95622 1.02195 1.70032 1.37398 1.24053 1.24473 0.85470 0.78424 0.79021 0.77856 1.18362 1.21318 1.20128 1.48141 1.48413 1.13652 1.22083 1.22018 1.02301 0.80142 1.02227 1.21016 0.78932 0.86744 0.85125 1.90642 1.59682 1.19657 1.77800 1.23030 0.97389 0.89773 0.89131 0.86554 1.23482 0.96279 0.98908 0.98425 1.22669 1.00203 0.92021 0.96248 0.86879 1.21768 0.92075 1.02683 1.03101 1.22688 0.92218 0.97522 0.85615 0.84989 1.23824 0.79846 0.73029 0.91283 1.90741 1.32384 1.43920 1.76287 1.84451 1.46371 1.74401 1.25794 1.88634 1.42544 1.35166 1.61580 0.96493 0.91336 0.92823 0.92709 0.91119 0.88923 0.90813 0.85005 0.90286 0.90096 0.89663 0.92363 0.70692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.55 8.95 71.98 0.64 -5.91 16 2 C 0.26 13.72 2.64 44.25 0.12 13.84 16 3 H 0.00 0.25 6.90 -2.39 -0.02 0.23 16 4 C -0.54 -28.62 8.37 25.60 0.21 -28.41 16 5 H 0.07 3.40 7.65 -2.91 -0.02 3.38 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -53.42 11.32 21.44 0.24 -53.18 16 8 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 9 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 10 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 N -0.59 -24.89 2.75 -826.80 -2.28 -27.17 16 13 C 0.07 2.16 8.31 127.77 1.06 3.22 16 14 C 0.49 21.53 7.08 87.66 0.62 22.15 16 15 O -0.60 -33.24 15.88 15.44 0.25 -32.99 16 16 C 0.07 2.07 2.94 30.51 0.09 2.16 16 17 H 0.12 3.03 7.13 -2.39 -0.02 3.02 16 18 C -0.13 -2.79 5.33 32.05 0.17 -2.62 16 19 C -0.09 -1.47 3.11 -9.53 -0.03 -1.49 16 20 H 0.11 1.36 7.85 -2.38 -0.02 1.34 16 21 C -0.14 -1.56 9.14 71.98 0.66 -0.90 16 22 C 0.08 1.84 3.66 30.32 0.11 1.95 16 23 H 0.13 2.74 7.81 -2.39 -0.02 2.72 16 24 C 0.48 10.76 7.52 71.24 0.54 11.30 16 25 O -0.54 -17.21 17.28 28.34 0.49 -16.72 16 26 O -0.50 -6.43 13.42 -51.45 -0.69 -7.12 16 27 O -0.36 -12.66 9.82 -121.05 -1.19 -13.85 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 30 H 0.05 2.32 6.66 -2.39 -0.02 2.30 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.07 1.80 7.76 -2.39 -0.02 1.78 16 33 H 0.09 1.90 6.06 -2.39 -0.01 1.88 16 34 H 0.07 2.18 6.43 -2.39 -0.02 2.17 16 35 H 0.13 1.90 6.79 -2.38 -0.02 1.88 16 36 H 0.08 1.94 7.93 -2.39 -0.02 1.92 16 37 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 0.76 8.12 -2.39 -0.02 0.74 16 40 H 0.43 1.98 9.10 -74.06 -0.67 1.31 16 Total: -1.00 -82.72 328.67 3.88 -78.84 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.39 Total: 11.41 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 4.64 Total: 16.43 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -2.03 Total: -80.35 kcal Atomic # 8 Polarization: -69.53 SS G_CDS: -1.14 Total: -70.68 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -82.72 3.88 -78.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.277 kcal (2) G-P(sol) polarization free energy of solvation -82.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds