Wall clock time and date at job start Tue Mar 31 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47336 * 2 1 4 4 C 1.50702 * 109.47336 * 239.99732 * 2 1 3 5 5 H 1.08000 * 119.99680 * 275.00069 * 4 2 1 6 6 C 1.37872 * 120.00055 * 94.99732 * 4 2 1 7 7 N 1.31508 * 120.00190 * 184.91356 * 6 4 2 8 8 Si 1.86801 * 119.99962 * 4.92069 * 6 4 2 9 9 H 1.48503 * 109.47267 * 84.82787 * 8 6 4 10 10 H 1.48499 * 109.47288 * 204.82922 * 8 6 4 11 11 H 1.48499 * 109.47227 * 324.83373 * 8 6 4 12 12 N 1.46505 * 109.47246 * 119.99923 * 2 1 3 13 13 C 1.34780 * 119.99729 * 274.99742 * 12 2 1 14 14 O 1.21287 * 119.99969 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00249 * 179.97438 * 13 12 2 16 16 C 1.52994 * 109.47554 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47534 * 180.02562 * 16 15 13 18 18 H 1.09008 * 110.27054 * 307.09631 * 17 16 15 19 19 C 1.54939 * 110.31124 * 185.00257 * 17 16 15 20 20 C 1.55309 * 100.94122 * 204.63936 * 19 17 16 21 21 H 1.09001 * 110.85099 * 275.94564 * 20 19 17 22 22 C 1.50703 * 110.85067 * 152.31922 * 20 19 17 23 23 O 1.20828 * 119.99655 * 0.02562 * 22 20 19 24 24 O 1.34221 * 120.00057 * 180.02562 * 22 20 19 25 25 C 1.54389 * 102.25374 * 34.13441 * 20 19 17 26 26 O 1.43249 * 107.58236 * 338.64155 * 25 20 19 27 27 H 1.08997 * 109.47608 * 55.04106 * 1 2 3 28 28 H 1.09002 * 109.46808 * 175.04370 * 1 2 3 29 29 H 1.09008 * 109.46875 * 295.03731 * 1 2 3 30 30 H 0.97000 * 120.00674 * 179.97438 * 7 6 4 31 31 H 0.96997 * 120.00619 * 94.99944 * 12 2 1 32 32 H 1.08998 * 109.46818 * 60.00092 * 15 13 12 33 33 H 1.09007 * 109.46574 * 300.00515 * 15 13 12 34 34 H 1.08997 * 109.47214 * 300.00541 * 16 15 13 35 35 H 1.08998 * 109.47183 * 60.00070 * 16 15 13 36 36 H 1.08999 * 111.12806 * 322.55657 * 19 17 16 37 37 H 1.08993 * 111.12703 * 86.72073 * 19 17 16 38 38 H 0.96704 * 116.99623 * 180.02562 * 24 22 20 39 39 H 1.08994 * 109.83356 * 98.14977 * 25 20 19 40 40 H 1.08994 * 109.83085 * 219.04482 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4621 8 14 2.3135 1.8789 -2.3175 9 1 3.5991 2.3948 -1.7822 10 1 2.1058 2.3989 -3.6929 11 1 1.1987 2.3274 -1.4450 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1585 2.4116 15 6 2.6489 -0.7286 3.5878 16 6 2.7000 0.2544 4.7591 17 6 3.2100 -0.4667 6.0084 18 1 2.6208 -1.3650 6.1929 19 6 3.1509 0.4770 7.2358 20 6 4.2421 -0.1523 8.1443 21 1 3.8343 -0.9807 8.7236 22 6 4.8524 0.8874 9.0485 23 8 4.4714 2.0328 8.9954 24 8 5.8192 0.5411 9.9127 25 6 5.2745 -0.6583 7.1139 26 8 4.5989 -0.8011 5.8588 27 1 -0.3634 0.5888 -0.8422 28 1 -0.3633 -1.0239 -0.0888 29 1 -0.3633 0.4350 0.9312 30 1 2.9363 -0.1051 -4.2556 31 1 2.2491 -1.6317 1.1528 32 1 3.6480 -1.1211 3.3987 33 1 1.9759 -1.5504 3.8327 34 1 3.3726 1.0765 4.5144 35 1 1.7007 0.6466 4.9481 36 1 3.4114 1.4985 6.9590 37 1 2.1721 0.4390 7.7138 38 1 6.1797 1.2426 10.4723 39 1 6.0852 0.0638 7.0173 40 1 5.6732 -1.6215 7.4323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:53 Heat of formation + Delta-G solvation = -192.622995 kcal Electronic energy + Delta-G solvation = -22258.203326 eV Core-core repulsion = 18651.320121 eV Total energy + Delta-G solvation = -3606.883205 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.10121 -39.51118 -38.80812 -36.61062 -34.95896 -33.48765 -32.82731 -32.30531 -30.12249 -28.58786 -25.30345 -24.70883 -24.39284 -21.44808 -21.11447 -20.36500 -19.45738 -18.51332 -17.67912 -17.41271 -16.92092 -15.94985 -15.80700 -15.65012 -15.36551 -14.89165 -14.56096 -14.01950 -13.69807 -13.61383 -13.12473 -12.88248 -12.58110 -12.48547 -12.26957 -12.12158 -11.87577 -11.86413 -11.42083 -11.39261 -11.21159 -11.02247 -11.01428 -10.77749 -10.76713 -10.53578 -9.85358 -9.78931 -9.17140 -9.05269 -8.67084 -8.02134 -6.21016 -4.24399 1.67894 2.45675 3.28344 3.36250 3.38516 3.44060 3.45925 3.76292 4.04305 4.35188 4.39100 4.43997 4.62217 4.82726 4.84042 5.06936 5.17896 5.26827 5.29905 5.33073 5.36621 5.51164 5.66498 5.77161 5.90154 6.00519 6.14525 6.32646 6.37926 6.55501 6.70954 6.71579 6.98044 7.22880 7.38601 7.42680 7.61224 8.18241 8.63476 8.80048 9.06841 9.41643 10.90829 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033082 B = 0.002824 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.188467 B = 9911.672520 C = 9963.767066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.229 3.771 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.706 5.706 13 C 0.499 3.501 14 O -0.564 6.564 15 C -0.139 4.139 16 C -0.101 4.101 17 C 0.081 3.919 18 H 0.079 0.921 19 C -0.137 4.137 20 C -0.122 4.122 21 H 0.124 0.876 22 C 0.490 3.510 23 O -0.506 6.506 24 O -0.515 6.515 25 C 0.069 3.931 26 O -0.368 6.368 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.028 0.972 30 H 0.267 0.733 31 H 0.393 0.607 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.413 0.587 39 H 0.072 0.928 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -2.217 25.789 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.127 3.873 3 H 0.067 0.933 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.354 5.354 13 C 0.284 3.716 14 O -0.444 6.444 15 C -0.180 4.180 16 C -0.139 4.139 17 C 0.024 3.976 18 H 0.097 0.903 19 C -0.175 4.175 20 C -0.141 4.141 21 H 0.142 0.858 22 C 0.331 3.669 23 O -0.393 6.393 24 O -0.327 6.327 25 C -0.008 4.008 26 O -0.287 6.287 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.226 0.774 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.272 0.728 39 H 0.090 0.910 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.354 -1.412 25.125 25.387 hybrid contribution 0.339 0.956 0.499 1.130 sum 3.693 -0.456 25.624 25.893 Atomic orbital electron populations 1.22211 0.98704 1.00476 0.99164 1.19108 0.90852 0.94357 0.82988 0.93314 1.21027 1.45114 0.95627 0.94999 0.90352 1.24945 0.93648 0.98642 0.95167 1.69880 1.44919 1.36182 1.01689 0.86884 0.79817 0.85870 0.77264 1.19863 1.21232 1.18502 1.46637 1.64921 1.13886 1.09958 1.20628 0.78284 0.87569 0.85071 1.90634 1.51907 1.16350 1.85513 1.21638 1.03383 0.99275 0.93666 1.21463 1.02578 0.98096 0.91723 1.23147 0.82896 0.96672 0.94880 0.90331 1.23364 0.98333 1.01453 0.94328 1.22648 0.97898 0.97486 0.96083 0.85821 1.23014 0.76612 0.88752 0.78487 1.90764 1.60027 1.21515 1.66951 1.84530 1.51429 1.46794 1.49964 1.22965 0.93896 1.01441 0.82539 1.88518 1.21194 1.89556 1.29477 0.93016 0.93472 0.95273 0.92270 0.77353 0.88643 0.89533 0.90217 0.89722 0.88341 0.88789 0.72824 0.90964 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.47 37.16 0.35 -2.91 16 2 C 0.23 5.56 2.22 -69.08 -0.15 5.41 16 3 H 0.05 1.30 4.73 -51.93 -0.25 1.05 16 4 C -0.53 -14.42 9.05 -34.44 -0.31 -14.73 16 5 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 8 Si 0.87 21.96 26.99 -169.99 -4.59 17.37 16 9 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.26 -6.46 6.82 56.52 0.39 -6.07 16 12 N -0.71 -14.34 5.07 -54.93 -0.28 -14.61 16 13 C 0.50 9.54 7.79 -10.98 -0.09 9.46 16 14 O -0.56 -12.90 15.65 5.55 0.09 -12.81 16 15 C -0.14 -1.89 5.63 -27.89 -0.16 -2.05 16 16 C -0.10 -1.26 4.23 -26.73 -0.11 -1.38 16 17 C 0.08 0.78 3.40 -25.71 -0.09 0.69 16 18 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 19 C -0.14 -1.17 5.70 -24.48 -0.14 -1.31 16 20 C -0.12 -0.86 3.50 -89.82 -0.31 -1.18 16 21 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 22 C 0.49 4.02 7.50 36.01 0.27 4.29 16 23 O -0.51 -5.90 16.45 -18.75 -0.31 -6.21 16 24 O -0.51 -2.89 13.42 -39.23 -0.53 -3.42 16 25 C 0.07 0.55 7.39 37.89 0.28 0.83 16 26 O -0.37 -4.04 10.81 -35.23 -0.38 -4.42 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 31 H 0.39 7.00 8.59 -40.82 -0.35 6.65 16 32 H 0.10 1.26 7.99 -51.93 -0.42 0.84 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 35 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.10 1.04 7.29 -51.93 -0.38 0.66 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.41 0.70 9.10 45.56 0.41 1.12 16 39 H 0.07 0.60 7.81 -51.93 -0.41 0.19 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -35.20 337.95 -5.86 -41.07 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.18 Total: 4.35 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.56 Total: -0.70 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.50 Total: -40.32 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -1.13 Total: -26.87 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.59 Total: 17.37 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.20 -5.86 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.557 kcal (2) G-P(sol) polarization free energy of solvation -35.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds