Wall clock time and date at job start Tue Mar 31 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47336 * 2 1 4 4 C 1.50702 * 109.47336 * 239.99732 * 2 1 3 5 5 H 1.08000 * 119.99680 * 275.00069 * 4 2 1 6 6 C 1.37872 * 120.00055 * 94.99732 * 4 2 1 7 7 N 1.31508 * 120.00190 * 184.91356 * 6 4 2 8 8 Si 1.86801 * 119.99962 * 4.92069 * 6 4 2 9 9 H 1.48503 * 109.47267 * 84.82787 * 8 6 4 10 10 H 1.48499 * 109.47288 * 204.82922 * 8 6 4 11 11 H 1.48499 * 109.47227 * 324.83373 * 8 6 4 12 12 N 1.46505 * 109.47246 * 119.99923 * 2 1 3 13 13 C 1.34780 * 119.99729 * 274.99742 * 12 2 1 14 14 O 1.21287 * 119.99969 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00249 * 179.97438 * 13 12 2 16 16 C 1.52994 * 109.47554 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47534 * 180.02562 * 16 15 13 18 18 H 1.09008 * 110.27054 * 307.09631 * 17 16 15 19 19 C 1.54939 * 110.31124 * 185.00257 * 17 16 15 20 20 C 1.55309 * 100.94122 * 204.63936 * 19 17 16 21 21 H 1.09001 * 110.85099 * 275.94564 * 20 19 17 22 22 C 1.50703 * 110.85067 * 152.31922 * 20 19 17 23 23 O 1.20828 * 119.99655 * 0.02562 * 22 20 19 24 24 O 1.34221 * 120.00057 * 180.02562 * 22 20 19 25 25 C 1.54389 * 102.25374 * 34.13441 * 20 19 17 26 26 O 1.43249 * 107.58236 * 338.64155 * 25 20 19 27 27 H 1.08997 * 109.47608 * 55.04106 * 1 2 3 28 28 H 1.09002 * 109.46808 * 175.04370 * 1 2 3 29 29 H 1.09008 * 109.46875 * 295.03731 * 1 2 3 30 30 H 0.97000 * 120.00674 * 179.97438 * 7 6 4 31 31 H 0.96997 * 120.00619 * 94.99944 * 12 2 1 32 32 H 1.08998 * 109.46818 * 60.00092 * 15 13 12 33 33 H 1.09007 * 109.46574 * 300.00515 * 15 13 12 34 34 H 1.08997 * 109.47214 * 300.00541 * 16 15 13 35 35 H 1.08998 * 109.47183 * 60.00070 * 16 15 13 36 36 H 1.08999 * 111.12806 * 322.55657 * 19 17 16 37 37 H 1.08993 * 111.12703 * 86.72073 * 19 17 16 38 38 H 0.96704 * 116.99623 * 180.02562 * 24 22 20 39 39 H 1.08994 * 109.83356 * 98.14977 * 25 20 19 40 40 H 1.08994 * 109.83085 * 219.04482 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4621 8 14 2.3135 1.8789 -2.3175 9 1 3.5991 2.3948 -1.7822 10 1 2.1058 2.3989 -3.6929 11 1 1.1987 2.3274 -1.4450 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1585 2.4116 15 6 2.6489 -0.7286 3.5878 16 6 2.7000 0.2544 4.7591 17 6 3.2100 -0.4667 6.0084 18 1 2.6208 -1.3650 6.1929 19 6 3.1509 0.4770 7.2358 20 6 4.2421 -0.1523 8.1443 21 1 3.8343 -0.9807 8.7236 22 6 4.8524 0.8874 9.0485 23 8 4.4714 2.0328 8.9954 24 8 5.8192 0.5411 9.9127 25 6 5.2745 -0.6583 7.1139 26 8 4.5989 -0.8011 5.8588 27 1 -0.3634 0.5888 -0.8422 28 1 -0.3633 -1.0239 -0.0888 29 1 -0.3633 0.4350 0.9312 30 1 2.9363 -0.1051 -4.2556 31 1 2.2491 -1.6317 1.1528 32 1 3.6480 -1.1211 3.3987 33 1 1.9759 -1.5504 3.8327 34 1 3.3726 1.0765 4.5144 35 1 1.7007 0.6466 4.9481 36 1 3.4114 1.4985 6.9590 37 1 2.1721 0.4390 7.7138 38 1 6.1797 1.2426 10.4723 39 1 6.0852 0.0638 7.0173 40 1 5.6732 -1.6215 7.4323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:52 Heat of formation + Delta-G solvation = -219.939697 kcal Electronic energy + Delta-G solvation = -22259.387867 eV Core-core repulsion = 18651.320121 eV Total energy + Delta-G solvation = -3608.067746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74007 -40.66097 -39.93749 -37.19578 -36.76429 -34.57481 -34.34554 -33.48755 -31.75317 -29.62308 -27.33315 -25.49253 -25.28901 -22.70799 -21.96561 -21.45362 -21.07268 -19.23524 -19.09045 -18.32333 -17.88568 -17.35590 -17.20509 -16.59781 -16.37115 -16.03788 -15.85234 -15.36400 -14.86388 -14.60108 -14.40763 -14.30885 -14.19740 -13.98047 -13.30983 -13.08664 -13.04769 -12.86285 -12.78991 -12.69079 -12.50527 -12.43899 -12.12317 -11.95061 -11.88674 -11.84067 -11.64908 -11.22958 -10.86622 -10.63658 -10.48595 -9.76181 -8.39781 -6.45327 1.07016 1.27712 1.32219 1.42950 1.85934 1.95804 2.26011 2.53797 2.79816 3.03553 3.17840 3.72755 3.86599 3.92247 3.97458 4.14282 4.31644 4.34786 4.41026 4.49562 4.61130 4.72102 4.73681 4.80373 4.80855 4.85717 4.85903 5.03499 5.13045 5.16678 5.33331 5.39164 5.46392 5.53766 5.79542 6.01950 6.13574 6.59874 6.90398 6.96683 7.21133 7.53921 8.75334 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033082 B = 0.002824 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.188467 B = 9911.672520 C = 9963.767066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.231 3.769 3 H 0.026 0.974 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.032 3.968 7 N -0.930 5.930 8 Si 0.926 3.074 9 H -0.277 1.277 10 H -0.276 1.276 11 H -0.257 1.257 12 N -0.707 5.707 13 C 0.495 3.505 14 O -0.604 6.604 15 C -0.125 4.125 16 C -0.100 4.100 17 C 0.087 3.913 18 H 0.110 0.890 19 C -0.139 4.139 20 C -0.114 4.114 21 H 0.158 0.842 22 C 0.495 3.505 23 O -0.548 6.548 24 O -0.507 6.507 25 C 0.065 3.935 26 O -0.393 6.393 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.270 0.730 31 H 0.406 0.594 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.429 0.571 39 H 0.062 0.938 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 -3.321 28.136 28.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.127 3.873 3 H 0.044 0.956 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.168 4.168 7 N -0.569 5.569 8 Si 0.751 3.249 9 H -0.203 1.203 10 H -0.201 1.201 11 H -0.182 1.182 12 N -0.356 5.356 13 C 0.283 3.717 14 O -0.486 6.486 15 C -0.165 4.165 16 C -0.138 4.138 17 C 0.031 3.969 18 H 0.127 0.873 19 C -0.176 4.176 20 C -0.133 4.133 21 H 0.176 0.824 22 C 0.338 3.662 23 O -0.439 6.439 24 O -0.321 6.321 25 C -0.012 4.012 26 O -0.313 6.313 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.242 0.758 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.292 0.708 39 H 0.080 0.920 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.147 -2.546 27.510 27.806 hybrid contribution 0.470 1.255 -0.154 1.349 sum 3.617 -1.291 27.356 27.624 Atomic orbital electron populations 1.22093 0.97060 1.01280 0.99396 1.18873 0.92059 0.93018 0.83386 0.95613 1.21221 1.44151 0.94868 0.96120 0.92364 1.25598 0.93870 1.02283 0.95057 1.69970 1.46792 1.37678 1.02439 0.86066 0.79554 0.81610 0.77637 1.20252 1.20125 1.18169 1.46426 1.65233 1.14509 1.09416 1.21575 0.77019 0.87182 0.85930 1.90617 1.53473 1.18353 1.86186 1.21636 1.04230 0.99774 0.90851 1.21435 1.02035 0.97369 0.92942 1.23137 0.82814 0.97598 0.93374 0.87264 1.23317 0.99925 0.99799 0.94574 1.22685 0.97021 0.97827 0.95778 0.82426 1.23227 0.76361 0.88221 0.78372 1.90759 1.61531 1.23257 1.68340 1.84492 1.50465 1.47482 1.49611 1.23103 0.93657 1.02549 0.81841 1.88482 1.21909 1.89589 1.31290 0.93616 0.92214 0.94341 0.92023 0.75829 0.87817 0.85812 0.93293 0.89842 0.91200 0.86902 0.70843 0.92000 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 9.47 71.98 0.68 -5.36 16 2 C 0.23 11.07 2.22 44.24 0.10 11.17 16 3 H 0.03 1.37 4.73 -2.39 -0.01 1.36 16 4 C -0.53 -28.70 9.05 25.60 0.23 -28.47 16 5 H 0.06 3.36 8.06 -2.91 -0.02 3.33 16 6 C 0.03 1.84 5.47 84.65 0.46 2.30 16 7 N -0.93 -55.95 13.96 21.44 0.30 -55.65 16 8 Si 0.93 45.58 26.99 68.60 1.85 47.43 16 9 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.26 -12.43 6.82 99.48 0.68 -11.75 16 12 N -0.71 -27.95 5.07 -446.08 -2.26 -30.21 16 13 C 0.49 18.38 7.79 87.66 0.68 19.06 16 14 O -0.60 -27.53 15.65 -3.05 -0.05 -27.58 16 15 C -0.13 -3.11 5.63 29.85 0.17 -2.94 16 16 C -0.10 -2.37 4.23 30.59 0.13 -2.24 16 17 C 0.09 1.46 3.40 31.26 0.11 1.57 16 18 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 19 C -0.14 -2.12 5.70 32.05 0.18 -1.94 16 20 C -0.11 -1.31 3.50 -10.27 -0.04 -1.35 16 21 H 0.16 0.77 8.14 -2.39 -0.02 0.75 16 22 C 0.49 7.31 7.50 71.24 0.53 7.85 16 23 O -0.55 -12.62 16.45 21.96 0.36 -12.25 16 24 O -0.51 -4.54 13.42 -51.33 -0.69 -5.23 16 25 C 0.07 0.89 7.39 72.45 0.54 1.43 16 26 O -0.39 -7.77 10.81 -148.98 -1.61 -9.38 16 27 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.41 13.89 8.59 -92.71 -0.80 13.09 16 32 H 0.10 2.48 7.99 -2.39 -0.02 2.46 16 33 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 35 H 0.08 1.99 8.10 -2.39 -0.02 1.97 16 36 H 0.07 1.49 7.29 -2.39 -0.02 1.47 16 37 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.43 0.62 9.10 -74.05 -0.67 -0.05 16 39 H 0.06 0.95 7.81 -2.39 -0.02 0.93 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -77.30 337.95 1.25 -76.05 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -0.43 Total: 15.76 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 3.78 Total: 1.06 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -1.96 Total: -85.86 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: -1.99 Total: -54.44 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.85 Total: 47.43 kcal Total: -77.30 1.25 -76.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.889 kcal (2) G-P(sol) polarization free energy of solvation -77.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds