Wall clock time and date at job start Tue Mar 31 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46809 * 2 1 4 4 C 1.50697 * 109.46856 * 119.99533 * 2 1 3 5 5 H 1.08007 * 120.00219 * 120.00123 * 4 2 1 6 6 C 1.37880 * 120.00369 * 299.99679 * 4 2 1 7 7 N 1.31519 * 119.99453 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00374 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46682 * 90.00633 * 8 6 4 10 10 H 1.48498 * 109.47377 * 210.00326 * 8 6 4 11 11 H 1.48501 * 109.47181 * 330.00784 * 8 6 4 12 12 N 1.46496 * 109.47271 * 239.99364 * 2 1 3 13 13 C 1.34776 * 119.99846 * 85.00297 * 12 2 1 14 14 O 1.21282 * 119.99940 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00035 * 180.02562 * 13 12 2 16 16 C 1.53006 * 109.47184 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47127 * 179.97438 * 16 15 13 18 18 H 1.09002 * 110.27574 * 307.09062 * 17 16 15 19 19 C 1.54948 * 110.31116 * 184.99837 * 17 16 15 20 20 C 1.55304 * 100.94261 * 204.63814 * 19 17 16 21 21 H 1.08998 * 110.84838 * 275.94000 * 20 19 17 22 22 C 1.50703 * 110.84517 * 152.32007 * 20 19 17 23 23 O 1.20825 * 120.00405 * 0.02562 * 22 20 19 24 24 O 1.34229 * 119.99679 * 179.97438 * 22 20 19 25 25 C 1.54381 * 102.25245 * 34.13548 * 20 19 17 26 26 O 1.43239 * 107.58934 * 338.64109 * 25 20 19 27 27 H 1.08999 * 109.46994 * 60.00417 * 1 2 3 28 28 H 1.09007 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47297 * 300.00575 * 1 2 3 30 30 H 0.97003 * 119.99770 * 179.97438 * 7 6 4 31 31 H 0.96998 * 120.00192 * 265.00345 * 12 2 1 32 32 H 1.09001 * 109.47612 * 59.99945 * 15 13 12 33 33 H 1.09001 * 109.47122 * 299.99777 * 15 13 12 34 34 H 1.09001 * 109.47002 * 299.99404 * 16 15 13 35 35 H 1.08993 * 109.46955 * 59.99842 * 16 15 13 36 36 H 1.09003 * 111.12227 * 322.55477 * 19 17 16 37 37 H 1.09000 * 111.12226 * 86.71687 * 19 17 16 38 38 H 0.96706 * 116.99981 * 180.02562 * 24 22 20 39 39 H 1.08999 * 109.83787 * 98.15277 * 25 20 19 40 40 H 1.09001 * 109.82752 * 219.03982 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8299 2.6033 8 14 2.3212 -1.1200 4.0081 9 1 3.6295 -0.5455 4.4125 10 1 1.3430 -0.9489 5.1121 11 1 2.4858 -2.5659 3.7122 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3570 14 8 1.8583 1.1582 -2.4117 15 6 2.6490 -0.7291 -3.5876 16 6 2.7000 0.2539 -4.7590 17 6 3.2101 -0.4675 -6.0082 18 1 4.1529 -0.9713 -5.7949 19 6 3.3889 0.5373 -7.1741 20 6 3.2571 -0.4071 -8.3999 21 1 4.2104 -0.8849 -8.6258 22 6 2.7327 0.3403 -9.5989 23 8 2.4793 1.5186 -9.5129 24 8 2.5482 -0.3027 -10.7626 25 6 2.2262 -1.4443 -7.9051 26 8 2.2322 -1.4114 -6.4731 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.7081 1.1612 3.4843 31 1 2.2490 -1.6319 -1.1524 32 1 1.9761 -1.5509 -3.8324 33 1 3.6481 -1.1216 -3.3984 34 1 1.7007 0.6460 -4.9481 35 1 3.3726 1.0759 -4.5145 36 1 2.5989 1.2883 -7.1701 37 1 4.3731 1.0048 -7.1423 38 1 2.2104 0.2188 -11.5036 39 1 1.2345 -1.1864 -8.2767 40 1 2.5049 -2.4384 -8.2546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:55 Heat of formation + Delta-G solvation = -192.355910 kcal Electronic energy + Delta-G solvation = -22160.090009 eV Core-core repulsion = 18553.218386 eV Total energy + Delta-G solvation = -3606.871623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08128 -39.46909 -38.67724 -36.59339 -34.85117 -33.42403 -32.80593 -32.30125 -29.60611 -28.22531 -25.22949 -24.69054 -24.32948 -21.45068 -21.11593 -20.44456 -19.26456 -18.49411 -17.65420 -17.22555 -16.76510 -15.85718 -15.71361 -15.55223 -15.14964 -14.79598 -14.55900 -14.18466 -13.64412 -13.52624 -13.09426 -12.86649 -12.42200 -12.29847 -12.11328 -11.86671 -11.81239 -11.63312 -11.36925 -11.18969 -11.02071 -10.97090 -10.94794 -10.74756 -10.63306 -10.26932 -10.19886 -9.76730 -9.01500 -8.90863 -8.51063 -7.83443 -6.09256 -4.18393 1.69732 2.47407 3.26189 3.32632 3.34675 3.47392 3.51660 3.79063 4.13005 4.37872 4.42077 4.47039 4.68623 4.85619 4.87335 5.14125 5.22638 5.28211 5.32078 5.37714 5.40202 5.55756 5.72064 5.81675 5.98076 6.02499 6.18694 6.38240 6.73457 6.87764 7.02435 7.20678 7.40291 7.53127 7.61930 7.74196 7.96461 8.19530 8.74438 8.82819 9.21966 9.49543 10.96728 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.048977 B = 0.002538 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.564660 B =11031.668007 C =11215.333919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.712 5.712 13 C 0.499 3.501 14 O -0.559 6.559 15 C -0.139 4.139 16 C -0.100 4.100 17 C 0.081 3.919 18 H 0.079 0.921 19 C -0.137 4.137 20 C -0.122 4.122 21 H 0.124 0.876 22 C 0.490 3.510 23 O -0.505 6.505 24 O -0.515 6.515 25 C 0.069 3.931 26 O -0.369 6.369 27 H 0.014 0.986 28 H 0.026 0.974 29 H 0.089 0.911 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.412 0.588 39 H 0.072 0.928 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.646 -5.953 -23.638 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.359 5.359 13 C 0.284 3.716 14 O -0.439 6.439 15 C -0.180 4.180 16 C -0.138 4.138 17 C 0.024 3.976 18 H 0.097 0.903 19 C -0.175 4.175 20 C -0.141 4.141 21 H 0.142 0.858 22 C 0.331 3.669 23 O -0.392 6.392 24 O -0.328 6.328 25 C -0.008 4.008 26 O -0.288 6.288 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.272 0.728 39 H 0.090 0.910 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.284 -5.007 -23.002 24.127 hybrid contribution 0.347 -0.481 0.158 0.614 sum 5.631 -5.488 -22.844 24.159 Atomic orbital electron populations 1.22072 0.98564 0.99061 1.00842 1.18715 0.90999 0.93963 0.80200 0.93480 1.21237 1.32315 1.13153 0.90395 0.92111 1.24906 0.94851 0.94998 0.99075 1.69914 1.35877 1.22544 1.23814 0.86446 0.78570 0.79830 0.82218 1.20591 1.21094 1.19864 1.46536 1.65156 1.13532 1.10689 1.20514 0.78618 0.87551 0.84907 1.90645 1.51612 1.16329 1.85333 1.21638 1.02863 0.99763 0.93695 1.21460 1.03651 0.97467 0.91235 1.23159 0.91963 0.88368 0.94098 0.90337 1.23370 1.05290 0.98163 0.90661 1.22646 1.02009 0.98090 0.91369 0.85834 1.23019 0.74198 0.85931 0.83730 1.90764 1.47043 1.17142 1.84245 1.84531 1.78752 1.47554 1.21923 1.22957 0.97861 0.97826 0.82181 1.88509 1.59851 1.62080 1.18377 0.96668 0.95517 0.89233 0.92618 0.77948 0.88946 0.89629 0.90240 0.89656 0.88315 0.88761 0.72845 0.90995 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.41 16 2 C 0.26 6.85 2.56 -69.09 -0.18 6.67 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.32 8.73 -34.44 -0.30 -14.62 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.27 11.32 55.43 0.63 -24.65 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.71 -15.09 5.07 -54.94 -0.28 -15.37 16 13 C 0.50 10.00 7.79 -10.99 -0.09 9.92 16 14 O -0.56 -13.51 15.65 5.56 0.09 -13.42 16 15 C -0.14 -1.97 5.63 -27.88 -0.16 -2.13 16 16 C -0.10 -1.31 4.23 -26.73 -0.11 -1.42 16 17 C 0.08 0.81 3.40 -25.70 -0.09 0.72 16 18 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 19 C -0.14 -1.21 5.70 -24.48 -0.14 -1.35 16 20 C -0.12 -0.88 3.50 -89.83 -0.31 -1.20 16 21 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 22 C 0.49 4.08 7.50 36.01 0.27 4.35 16 23 O -0.50 -5.97 16.45 -18.75 -0.31 -6.27 16 24 O -0.52 -2.93 13.42 -39.25 -0.53 -3.46 16 25 C 0.07 0.56 7.39 37.88 0.28 0.84 16 26 O -0.37 -4.07 10.81 -35.23 -0.38 -4.46 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.39 7.10 8.54 -40.82 -0.35 6.75 16 32 H 0.09 1.23 7.99 -51.93 -0.42 0.81 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.19 8.10 -51.93 -0.42 0.76 16 35 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 36 H 0.10 1.07 7.29 -51.93 -0.38 0.69 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.41 0.73 9.10 45.56 0.41 1.14 16 39 H 0.07 0.59 7.81 -51.93 -0.41 0.18 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -34.49 338.20 -6.46 -40.95 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.18 Total: 5.74 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -0.58 Total: 0.03 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.35 Total: -40.01 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -1.13 Total: -27.61 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.49 -6.46 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.402 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds