Wall clock time and date at job start Tue Mar 31 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46809 * 2 1 4 4 C 1.50697 * 109.46856 * 119.99533 * 2 1 3 5 5 H 1.08007 * 120.00219 * 120.00123 * 4 2 1 6 6 C 1.37880 * 120.00369 * 299.99679 * 4 2 1 7 7 N 1.31519 * 119.99453 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00374 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46682 * 90.00633 * 8 6 4 10 10 H 1.48498 * 109.47377 * 210.00326 * 8 6 4 11 11 H 1.48501 * 109.47181 * 330.00784 * 8 6 4 12 12 N 1.46496 * 109.47271 * 239.99364 * 2 1 3 13 13 C 1.34776 * 119.99846 * 85.00297 * 12 2 1 14 14 O 1.21282 * 119.99940 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00035 * 180.02562 * 13 12 2 16 16 C 1.53006 * 109.47184 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47127 * 179.97438 * 16 15 13 18 18 H 1.09002 * 110.27574 * 307.09062 * 17 16 15 19 19 C 1.54948 * 110.31116 * 184.99837 * 17 16 15 20 20 C 1.55304 * 100.94261 * 204.63814 * 19 17 16 21 21 H 1.08998 * 110.84838 * 275.94000 * 20 19 17 22 22 C 1.50703 * 110.84517 * 152.32007 * 20 19 17 23 23 O 1.20825 * 120.00405 * 0.02562 * 22 20 19 24 24 O 1.34229 * 119.99679 * 179.97438 * 22 20 19 25 25 C 1.54381 * 102.25245 * 34.13548 * 20 19 17 26 26 O 1.43239 * 107.58934 * 338.64109 * 25 20 19 27 27 H 1.08999 * 109.46994 * 60.00417 * 1 2 3 28 28 H 1.09007 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47297 * 300.00575 * 1 2 3 30 30 H 0.97003 * 119.99770 * 179.97438 * 7 6 4 31 31 H 0.96998 * 120.00192 * 265.00345 * 12 2 1 32 32 H 1.09001 * 109.47612 * 59.99945 * 15 13 12 33 33 H 1.09001 * 109.47122 * 299.99777 * 15 13 12 34 34 H 1.09001 * 109.47002 * 299.99404 * 16 15 13 35 35 H 1.08993 * 109.46955 * 59.99842 * 16 15 13 36 36 H 1.09003 * 111.12227 * 322.55477 * 19 17 16 37 37 H 1.09000 * 111.12226 * 86.71687 * 19 17 16 38 38 H 0.96706 * 116.99981 * 180.02562 * 24 22 20 39 39 H 1.08999 * 109.83787 * 98.15277 * 25 20 19 40 40 H 1.09001 * 109.82752 * 219.03982 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8299 2.6033 8 14 2.3212 -1.1200 4.0081 9 1 3.6295 -0.5455 4.4125 10 1 1.3430 -0.9489 5.1121 11 1 2.4858 -2.5659 3.7122 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3570 14 8 1.8583 1.1582 -2.4117 15 6 2.6490 -0.7291 -3.5876 16 6 2.7000 0.2539 -4.7590 17 6 3.2101 -0.4675 -6.0082 18 1 4.1529 -0.9713 -5.7949 19 6 3.3889 0.5373 -7.1741 20 6 3.2571 -0.4071 -8.3999 21 1 4.2104 -0.8849 -8.6258 22 6 2.7327 0.3403 -9.5989 23 8 2.4793 1.5186 -9.5129 24 8 2.5482 -0.3027 -10.7626 25 6 2.2262 -1.4443 -7.9051 26 8 2.2322 -1.4114 -6.4731 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.7081 1.1612 3.4843 31 1 2.2490 -1.6319 -1.1524 32 1 1.9761 -1.5509 -3.8324 33 1 3.6481 -1.1216 -3.3984 34 1 1.7007 0.6460 -4.9481 35 1 3.3726 1.0759 -4.5145 36 1 2.5989 1.2883 -7.1701 37 1 4.3731 1.0048 -7.1423 38 1 2.2104 0.2188 -11.5036 39 1 1.2345 -1.1864 -8.2767 40 1 2.5049 -2.4384 -8.2546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:55 Heat of formation + Delta-G solvation = -218.636937 kcal Electronic energy + Delta-G solvation = -22161.229639 eV Core-core repulsion = 18553.218386 eV Total energy + Delta-G solvation = -3608.011254 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.73658 -40.61770 -39.92231 -37.19044 -36.75930 -34.57269 -34.25256 -33.48393 -31.19984 -29.50353 -27.34276 -25.48994 -25.28474 -22.89633 -21.99266 -21.47032 -20.96631 -19.10687 -18.83771 -18.31350 -17.80416 -17.19908 -17.12516 -16.63393 -16.37127 -16.03128 -15.88643 -15.37680 -14.75599 -14.48397 -14.41024 -14.25719 -14.00943 -13.61109 -13.20630 -12.96929 -12.89181 -12.82198 -12.76662 -12.67565 -12.49351 -12.26248 -12.14334 -12.10544 -11.94699 -11.83650 -11.64621 -11.10543 -10.68103 -10.53513 -10.48188 -9.70742 -8.16839 -6.34654 1.07562 1.45531 1.46336 1.57282 1.89977 1.96038 2.37376 2.70177 2.79473 3.13303 3.17895 3.73127 3.86930 3.93354 3.98536 4.14089 4.30930 4.35507 4.44364 4.61084 4.71902 4.74081 4.80619 4.82796 4.85373 4.92460 5.03229 5.10548 5.16695 5.33666 5.44726 5.54214 5.63483 5.70775 5.92705 6.01746 6.11039 6.74118 6.90876 7.02534 7.33665 7.62961 8.89640 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.048977 B = 0.002538 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.564660 B =11031.668007 C =11215.333919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.268 3.732 3 H -0.004 1.004 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.975 3.025 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.258 1.258 12 N -0.708 5.708 13 C 0.492 3.508 14 O -0.607 6.607 15 C -0.123 4.123 16 C -0.100 4.100 17 C 0.089 3.911 18 H 0.109 0.891 19 C -0.140 4.140 20 C -0.114 4.114 21 H 0.158 0.842 22 C 0.495 3.505 23 O -0.549 6.549 24 O -0.506 6.506 25 C 0.066 3.934 26 O -0.391 6.391 27 H 0.009 0.991 28 H 0.040 0.960 29 H 0.066 0.934 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.429 0.571 39 H 0.063 0.937 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.444 -8.813 -24.666 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.164 3.836 3 H 0.014 0.986 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.182 1.182 12 N -0.357 5.357 13 C 0.280 3.720 14 O -0.490 6.490 15 C -0.162 4.162 16 C -0.138 4.138 17 C 0.032 3.968 18 H 0.127 0.873 19 C -0.177 4.177 20 C -0.133 4.133 21 H 0.176 0.824 22 C 0.338 3.662 23 O -0.439 6.439 24 O -0.320 6.320 25 C -0.011 4.011 26 O -0.311 6.311 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.292 0.708 39 H 0.081 0.919 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.090 -7.923 -24.086 26.328 hybrid contribution -0.260 0.449 0.387 0.647 sum 6.831 -7.474 -23.699 25.771 Atomic orbital electron populations 1.21902 0.98592 0.99395 0.99383 1.18317 0.90975 0.91904 0.82364 0.98645 1.21567 1.32486 1.13545 0.90763 0.90681 1.25865 0.94893 0.95638 1.02512 1.70071 1.37054 1.24106 1.24588 0.85299 0.77729 0.79207 0.77813 1.20285 1.21045 1.18230 1.46321 1.65270 1.14285 1.09856 1.21618 0.77263 0.87145 0.85981 1.90625 1.53423 1.18806 1.86129 1.21623 1.04659 0.99488 0.90440 1.21426 1.02091 0.97562 0.92718 1.23108 0.92516 0.88489 0.92640 0.87300 1.23321 1.05215 0.97781 0.91406 1.22678 1.03279 0.97195 0.90136 0.82425 1.23223 0.73132 0.85305 0.84511 1.90761 1.49064 1.19076 1.85006 1.84492 1.78236 1.47436 1.21851 1.23108 0.97844 0.99379 0.80773 1.88471 1.60484 1.62050 1.20112 0.97207 0.94064 0.91566 0.92590 0.75890 0.87325 0.86110 0.93208 0.90357 0.91218 0.87063 0.70847 0.91895 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.04 9.26 71.98 0.67 -6.37 16 2 C 0.27 14.29 2.56 44.25 0.11 14.40 16 3 H 0.00 -0.28 7.58 -2.39 -0.02 -0.29 16 4 C -0.55 -29.24 8.73 25.60 0.22 -29.02 16 5 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.58 5.30 84.65 0.45 1.03 16 7 N -0.92 -53.73 11.32 21.45 0.24 -53.49 16 8 Si 0.98 42.26 29.54 68.60 2.03 44.29 16 9 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 12 N -0.71 -29.86 5.07 -446.11 -2.26 -32.13 16 13 C 0.49 19.78 7.79 87.66 0.68 20.46 16 14 O -0.61 -30.51 15.65 -3.04 -0.05 -30.56 16 15 C -0.12 -3.23 5.63 29.85 0.17 -3.07 16 16 C -0.10 -2.55 4.23 30.60 0.13 -2.42 16 17 C 0.09 1.58 3.40 31.26 0.11 1.68 16 18 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 19 C -0.14 -2.28 5.70 32.05 0.18 -2.10 16 20 C -0.11 -1.36 3.50 -10.28 -0.04 -1.40 16 21 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 22 C 0.49 7.49 7.50 71.24 0.53 8.03 16 23 O -0.55 -12.92 16.45 21.97 0.36 -12.55 16 24 O -0.51 -4.61 13.42 -51.41 -0.69 -5.30 16 25 C 0.07 0.90 7.39 72.45 0.54 1.43 16 26 O -0.39 -7.76 10.81 -148.98 -1.61 -9.37 16 27 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 30 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.41 14.15 8.54 -92.71 -0.79 13.35 16 32 H 0.11 2.60 7.99 -2.39 -0.02 2.58 16 33 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 35 H 0.08 2.08 8.10 -2.39 -0.02 2.06 16 36 H 0.07 1.56 7.29 -2.39 -0.02 1.54 16 37 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.43 0.70 9.10 -74.05 -0.67 0.02 16 39 H 0.06 0.95 7.81 -2.39 -0.02 0.93 16 40 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -77.96 338.20 1.38 -76.59 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.40 Total: 19.87 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 3.76 Total: 2.66 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -2.02 Total: -85.61 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -1.99 Total: -57.79 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -77.96 1.38 -76.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.052 kcal (2) G-P(sol) polarization free energy of solvation -77.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds