Wall clock time and date at job start Tue Mar 31 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08990 * 109.47257 * 2 1 4 4 C 1.52996 * 109.47120 * 239.99701 * 2 1 3 5 5 C 1.50703 * 109.47066 * 64.99787 * 4 2 1 6 6 O 1.21288 * 120.00295 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00022 * 179.97438 * 5 4 2 8 8 C 1.37093 * 120.00203 * 180.02562 * 7 5 4 9 9 H 1.08005 * 119.99915 * 344.56947 * 8 7 5 10 10 C 1.38947 * 120.00509 * 164.56581 * 8 7 5 11 11 N 1.31419 * 119.99605 * 336.77186 * 10 8 7 12 12 Si 1.86799 * 120.00495 * 156.77149 * 10 8 7 13 13 H 1.48502 * 109.47154 * 265.57619 * 12 10 8 14 14 H 1.48502 * 109.46954 * 25.57345 * 12 10 8 15 15 H 1.48496 * 109.47474 * 145.57302 * 12 10 8 16 16 C 1.46507 * 120.00154 * 359.97438 * 7 5 4 17 17 C 1.50698 * 109.47312 * 275.45234 * 16 7 5 18 18 O 1.20824 * 120.00255 * 359.97438 * 17 16 7 19 19 O 1.34234 * 119.99835 * 179.97438 * 17 16 7 20 20 C 1.53002 * 109.47072 * 120.00073 * 2 1 3 21 21 H 1.09001 * 109.87037 * 179.29855 * 20 2 1 22 22 C 1.54107 * 109.87766 * 300.30452 * 20 2 1 23 23 C 1.54807 * 104.18617 * 121.45327 * 22 20 2 24 24 C 1.54997 * 102.09302 * 20.88232 * 23 22 20 25 25 O 1.43740 * 109.88003 * 58.29026 * 20 2 1 26 26 H 1.09001 * 109.46793 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46906 * 299.99889 * 1 2 3 28 28 H 1.09000 * 109.46924 * 60.00580 * 1 2 3 29 29 H 1.09006 * 109.47640 * 305.00375 * 4 2 1 30 30 H 1.09001 * 109.47591 * 184.99950 * 4 2 1 31 31 H 0.97003 * 119.99827 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.46419 * 35.45113 * 16 7 5 33 33 H 1.08997 * 109.46702 * 155.44744 * 16 7 5 34 34 H 0.96695 * 116.99798 * 179.97438 * 19 17 16 35 35 H 1.08997 * 110.48869 * 240.13193 * 22 20 2 36 36 H 1.09002 * 110.48744 * 2.64984 * 22 20 2 37 37 H 1.09006 * 110.90670 * 139.07888 * 23 22 20 38 38 H 1.08996 * 110.91080 * 262.64742 * 23 22 20 39 39 H 1.09000 * 110.61566 * 81.48069 * 24 23 22 40 40 H 1.09006 * 110.61584 * 204.47196 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 8 1.0116 1.0874 -2.3633 7 7 1.9853 -0.3915 -3.7001 8 6 1.6231 0.3167 -4.8166 9 1 0.8644 1.0823 -4.7479 10 6 2.2319 0.0495 -6.0367 11 7 3.4198 -0.5115 -6.0693 12 14 1.3619 0.4879 -7.6306 13 1 0.6185 -0.6964 -8.1307 14 1 0.4110 1.6019 -7.3853 15 1 2.3645 0.9067 -8.6428 16 6 2.7474 -1.6353 -3.8369 17 6 4.2174 -1.3439 -3.6784 18 8 4.5904 -0.2132 -3.4727 19 8 5.1124 -2.3404 -3.7656 20 6 2.0401 -0.7213 1.2492 21 1 3.1300 -0.7360 1.2496 22 6 1.5253 -0.0066 2.5138 23 6 0.7285 -1.0983 3.2688 24 6 1.3136 -2.4016 2.6675 25 8 1.5331 -2.0660 1.2784 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.6054 -1.7199 -1.2952 30 1 3.1264 -0.7995 -1.2056 31 1 3.8447 -0.6984 -6.9211 32 1 2.4319 -2.3410 -3.0684 33 1 2.5664 -2.0658 -4.8218 34 1 6.0439 -2.1046 -3.6576 35 1 2.3601 0.3445 3.1202 36 1 0.8747 0.8252 2.2437 37 1 0.9170 -1.0458 4.3411 38 1 -0.3379 -1.0169 3.0588 39 1 2.2556 -2.6586 3.1518 40 1 0.5991 -3.2199 2.7568 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592226318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:22 Heat of formation + Delta-G solvation = -168.594952 kcal Electronic energy + Delta-G solvation = -23994.592045 eV Core-core repulsion = 20388.750774 eV Total energy + Delta-G solvation = -3605.841270 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.82610 -39.26063 -38.10173 -35.37377 -34.64109 -33.82069 -32.04992 -31.70561 -28.49859 -27.61374 -27.16325 -24.65557 -23.23861 -21.60987 -21.06198 -19.86400 -18.52100 -17.14084 -16.86946 -16.46358 -16.25385 -15.64870 -15.41080 -15.37840 -14.51360 -14.41390 -14.17426 -13.98733 -13.63009 -13.10216 -12.94581 -12.50304 -11.92294 -11.89854 -11.70326 -11.60463 -11.51088 -11.29418 -11.23358 -11.00145 -10.93093 -10.49104 -10.44696 -10.38631 -10.37385 -10.26818 -10.11339 -9.59147 -9.48835 -8.99398 -8.36867 -7.85720 -6.41916 -3.83501 3.16333 3.26743 3.32619 3.48967 3.70263 3.94861 4.11377 4.29154 4.57323 4.67050 4.85245 4.93547 5.07157 5.15721 5.26193 5.37537 5.48687 5.60630 5.67713 5.69398 5.81549 5.87862 5.93921 5.99473 6.06548 6.18779 6.26170 6.37373 6.51260 6.52593 6.62188 6.73302 6.98294 7.05079 7.51571 7.58703 8.04269 8.41835 9.05909 9.14366 9.36590 9.91621 10.67338 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023644 B = 0.004950 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.962227 B = 5655.510724 C = 6408.214522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.067 4.067 3 H 0.084 0.916 4 C -0.126 4.126 5 C 0.464 3.536 6 O -0.574 6.574 7 N -0.435 5.435 8 C -0.304 4.304 9 H 0.108 0.892 10 C 0.028 3.972 11 N -0.881 5.881 12 Si 0.927 3.073 13 H -0.278 1.278 14 H -0.269 1.269 15 H -0.286 1.286 16 C 0.146 3.854 17 C 0.489 3.511 18 O -0.504 6.504 19 O -0.535 6.535 20 C 0.079 3.921 21 H 0.064 0.936 22 C -0.153 4.153 23 C -0.153 4.153 24 C 0.045 3.955 25 O -0.366 6.366 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.269 0.731 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.391 0.609 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 -6.452 13.379 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 H 0.103 0.897 4 C -0.166 4.166 5 C 0.253 3.747 6 O -0.458 6.458 7 N -0.155 5.155 8 C -0.431 4.431 9 H 0.126 0.874 10 C -0.175 4.175 11 N -0.522 5.522 12 Si 0.754 3.246 13 H -0.204 1.204 14 H -0.194 1.194 15 H -0.212 1.212 16 C 0.019 3.981 17 C 0.330 3.670 18 O -0.389 6.389 19 O -0.346 6.346 20 C 0.022 3.978 21 H 0.082 0.918 22 C -0.191 4.191 23 C -0.191 4.191 24 C -0.032 4.032 25 O -0.286 6.286 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.144 0.856 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.547 -5.884 13.091 14.436 hybrid contribution 0.794 0.400 -0.706 1.135 sum -0.754 -5.484 12.385 13.566 Atomic orbital electron populations 1.21880 0.94389 1.01572 1.02405 1.20985 0.97313 0.98817 0.91433 0.89732 1.21576 1.01272 1.00090 0.93709 1.20094 0.84257 0.86412 0.83891 1.90470 1.44014 1.25499 1.85783 1.43486 1.46475 1.19946 1.05578 1.19726 1.19731 1.19380 0.84285 0.87438 1.25205 0.94592 0.97833 0.99831 1.69843 1.11586 1.43826 1.26905 0.85893 0.79058 0.78843 0.80826 1.20377 1.19354 1.21193 1.20672 0.84363 0.88287 1.04788 1.23886 0.89736 0.82488 0.70933 1.90607 1.80557 1.23024 1.44747 1.84532 1.20774 1.43211 1.86059 1.22877 0.97327 0.82333 0.95299 0.91767 1.23035 1.00395 0.99362 0.96275 1.23101 1.00886 0.95168 0.99943 1.23528 0.99455 0.97258 0.82945 1.88953 1.85844 1.29723 1.24034 0.93041 0.93869 0.90114 0.89831 0.90900 0.92016 0.90298 0.85594 0.75267 0.91085 0.89775 0.90725 0.90542 0.92605 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.51 37.16 0.32 -2.11 16 2 C -0.07 -1.13 1.83 -90.62 -0.17 -1.30 16 3 H 0.08 1.55 7.95 -51.93 -0.41 1.13 16 4 C -0.13 -2.44 3.59 -27.88 -0.10 -2.54 16 5 C 0.46 11.33 7.15 -10.98 -0.08 11.25 16 6 O -0.57 -15.53 13.60 5.55 0.08 -15.45 16 7 N -0.44 -11.10 2.17 -116.09 -0.25 -11.35 16 8 C -0.30 -8.44 9.35 -14.94 -0.14 -8.58 16 9 H 0.11 3.13 7.37 -52.48 -0.39 2.75 16 10 C 0.03 0.73 4.84 -17.47 -0.08 0.64 16 11 N -0.88 -23.46 9.32 55.50 0.52 -22.94 16 12 Si 0.93 20.72 29.61 -169.99 -5.03 15.69 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.15 3.23 4.97 -5.19 -0.03 3.21 16 17 C 0.49 11.05 5.91 36.00 0.21 11.26 16 18 O -0.50 -13.30 16.80 -18.75 -0.31 -13.61 16 19 O -0.53 -9.81 13.42 -39.27 -0.53 -10.34 16 20 C 0.08 1.10 3.15 -26.15 -0.08 1.02 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 C -0.15 -1.70 6.14 -25.20 -0.15 -1.85 16 23 C -0.15 -1.45 7.16 -24.72 -0.18 -1.63 16 24 C 0.05 0.47 7.72 38.21 0.29 0.76 16 25 O -0.37 -5.21 10.00 -35.23 -0.35 -5.57 16 26 H 0.05 0.83 7.66 -51.93 -0.40 0.43 16 27 H 0.04 0.62 6.39 -51.93 -0.33 0.29 16 28 H 0.08 1.60 5.95 -51.93 -0.31 1.29 16 29 H 0.08 1.51 7.17 -51.93 -0.37 1.14 16 30 H 0.07 1.42 7.55 -51.93 -0.39 1.02 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.08 1.46 6.67 -51.93 -0.35 1.11 16 33 H 0.13 2.90 6.37 -51.93 -0.33 2.57 16 34 H 0.39 5.52 9.10 45.56 0.41 5.93 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.96 6.23 -51.93 -0.32 0.64 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 322.14 15.07 4.85 4.85 Total: -1.00 -33.34 322.14 -6.08 -39.41 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -4.86 Total: 9.15 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -0.18 Total: 10.14 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.27 Total: -34.29 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -1.12 Total: -44.96 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.34 -6.08 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592226318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.182 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds