Wall clock time and date at job start Tue Mar 31 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08990 * 109.47257 * 2 1 4 4 C 1.52996 * 109.47120 * 239.99701 * 2 1 3 5 5 C 1.50703 * 109.47066 * 64.99787 * 4 2 1 6 6 O 1.21288 * 120.00295 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00022 * 179.97438 * 5 4 2 8 8 C 1.37093 * 120.00203 * 180.02562 * 7 5 4 9 9 H 1.08005 * 119.99915 * 344.56947 * 8 7 5 10 10 C 1.38947 * 120.00509 * 164.56581 * 8 7 5 11 11 N 1.31419 * 119.99605 * 336.77186 * 10 8 7 12 12 Si 1.86799 * 120.00495 * 156.77149 * 10 8 7 13 13 H 1.48502 * 109.47154 * 265.57619 * 12 10 8 14 14 H 1.48502 * 109.46954 * 25.57345 * 12 10 8 15 15 H 1.48496 * 109.47474 * 145.57302 * 12 10 8 16 16 C 1.46507 * 120.00154 * 359.97438 * 7 5 4 17 17 C 1.50698 * 109.47312 * 275.45234 * 16 7 5 18 18 O 1.20824 * 120.00255 * 359.97438 * 17 16 7 19 19 O 1.34234 * 119.99835 * 179.97438 * 17 16 7 20 20 C 1.53002 * 109.47072 * 120.00073 * 2 1 3 21 21 H 1.09001 * 109.87037 * 179.29855 * 20 2 1 22 22 C 1.54107 * 109.87766 * 300.30452 * 20 2 1 23 23 C 1.54807 * 104.18617 * 121.45327 * 22 20 2 24 24 C 1.54997 * 102.09302 * 20.88232 * 23 22 20 25 25 O 1.43740 * 109.88003 * 58.29026 * 20 2 1 26 26 H 1.09001 * 109.46793 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46906 * 299.99889 * 1 2 3 28 28 H 1.09000 * 109.46924 * 60.00580 * 1 2 3 29 29 H 1.09006 * 109.47640 * 305.00375 * 4 2 1 30 30 H 1.09001 * 109.47591 * 184.99950 * 4 2 1 31 31 H 0.97003 * 119.99827 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.46419 * 35.45113 * 16 7 5 33 33 H 1.08997 * 109.46702 * 155.44744 * 16 7 5 34 34 H 0.96695 * 116.99798 * 179.97438 * 19 17 16 35 35 H 1.08997 * 110.48869 * 240.13193 * 22 20 2 36 36 H 1.09002 * 110.48744 * 2.64984 * 22 20 2 37 37 H 1.09006 * 110.90670 * 139.07888 * 23 22 20 38 38 H 1.08996 * 110.91080 * 262.64742 * 23 22 20 39 39 H 1.09000 * 110.61566 * 81.48069 * 24 23 22 40 40 H 1.09006 * 110.61584 * 204.47196 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 8 1.0116 1.0874 -2.3633 7 7 1.9853 -0.3915 -3.7001 8 6 1.6231 0.3167 -4.8166 9 1 0.8644 1.0823 -4.7479 10 6 2.2319 0.0495 -6.0367 11 7 3.4198 -0.5115 -6.0693 12 14 1.3619 0.4879 -7.6306 13 1 0.6185 -0.6964 -8.1307 14 1 0.4110 1.6019 -7.3853 15 1 2.3645 0.9067 -8.6428 16 6 2.7474 -1.6353 -3.8369 17 6 4.2174 -1.3439 -3.6784 18 8 4.5904 -0.2132 -3.4727 19 8 5.1124 -2.3404 -3.7656 20 6 2.0401 -0.7213 1.2492 21 1 3.1300 -0.7360 1.2496 22 6 1.5253 -0.0066 2.5138 23 6 0.7285 -1.0983 3.2688 24 6 1.3136 -2.4016 2.6675 25 8 1.5331 -2.0660 1.2784 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.6054 -1.7199 -1.2952 30 1 3.1264 -0.7995 -1.2056 31 1 3.8447 -0.6984 -6.9211 32 1 2.4319 -2.3410 -3.0684 33 1 2.5664 -2.0658 -4.8218 34 1 6.0439 -2.1046 -3.6576 35 1 2.3601 0.3445 3.1202 36 1 0.8747 0.8252 2.2437 37 1 0.9170 -1.0458 4.3411 38 1 -0.3379 -1.0169 3.0588 39 1 2.2556 -2.6586 3.1518 40 1 0.5991 -3.2199 2.7568 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592226318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:22 Heat of formation + Delta-G solvation = -191.481703 kcal Electronic energy + Delta-G solvation = -23995.584489 eV Core-core repulsion = 20388.750774 eV Total energy + Delta-G solvation = -3606.833715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36162 -40.63357 -39.81707 -37.12904 -36.41635 -35.32999 -33.75198 -32.90186 -29.89305 -29.29319 -28.55118 -26.49018 -24.40822 -22.87051 -22.46354 -21.18501 -20.20869 -19.00924 -18.69137 -18.12067 -17.41017 -17.20508 -16.81526 -16.53189 -16.21680 -16.07017 -15.86443 -15.62511 -14.80929 -14.55606 -14.13495 -14.07839 -13.65404 -13.46351 -13.43992 -13.14496 -12.71228 -12.68198 -12.45074 -12.37510 -12.25772 -12.16468 -12.11136 -12.09401 -11.67039 -11.56637 -11.48599 -11.38379 -10.93830 -10.52449 -10.28093 -9.83456 -8.43364 -5.92453 1.36822 1.42666 1.55222 1.70395 1.89688 2.26943 2.54466 2.94168 3.03181 3.13247 3.68066 3.75353 3.95957 4.06445 4.09265 4.14962 4.25796 4.40414 4.48385 4.55081 4.68470 4.75829 4.80217 4.85806 4.90995 4.92718 4.97937 5.02064 5.07598 5.22972 5.31529 5.37088 5.46754 5.57712 5.94565 6.03482 6.08621 6.41322 7.13259 7.32126 7.46602 7.97507 8.63965 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023644 B = 0.004950 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.962227 B = 5655.510724 C = 6408.214522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 H 0.064 0.936 4 C -0.112 4.112 5 C 0.451 3.549 6 O -0.612 6.612 7 N -0.449 5.449 8 C -0.341 4.341 9 H 0.079 0.921 10 C -0.002 4.002 11 N -0.893 5.893 12 Si 0.991 3.009 13 H -0.260 1.260 14 H -0.278 1.278 15 H -0.281 1.281 16 C 0.143 3.857 17 C 0.497 3.503 18 O -0.549 6.549 19 O -0.518 6.518 20 C 0.084 3.916 21 H 0.066 0.934 22 C -0.152 4.152 23 C -0.146 4.146 24 C 0.038 3.962 25 O -0.390 6.390 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.274 0.726 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.413 0.587 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.725 -8.133 14.501 16.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 H 0.083 0.917 4 C -0.152 4.152 5 C 0.242 3.758 6 O -0.498 6.498 7 N -0.168 5.168 8 C -0.468 4.468 9 H 0.096 0.904 10 C -0.203 4.203 11 N -0.532 5.532 12 Si 0.815 3.185 13 H -0.184 1.184 14 H -0.203 1.203 15 H -0.207 1.207 16 C 0.017 3.983 17 C 0.340 3.660 18 O -0.438 6.438 19 O -0.330 6.330 20 C 0.027 3.973 21 H 0.084 0.916 22 C -0.190 4.190 23 C -0.184 4.184 24 C -0.038 4.038 25 O -0.310 6.310 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.273 0.727 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.242 -7.624 14.222 16.184 hybrid contribution 0.776 0.876 -1.047 1.570 sum -0.466 -6.748 13.175 14.810 Atomic orbital electron populations 1.21736 0.94234 1.01570 1.01638 1.20968 0.97418 0.98037 0.92136 0.91736 1.21517 1.01237 1.00229 0.92221 1.21009 0.83286 0.86451 0.85018 1.90438 1.45485 1.27342 1.86513 1.43659 1.46943 1.20767 1.05438 1.19621 1.20521 1.20509 0.86193 0.90353 1.25944 0.94881 0.97348 1.02107 1.69918 1.11955 1.43619 1.27749 0.84955 0.77854 0.78834 0.76840 1.18449 1.20258 1.20711 1.20808 0.84264 0.87559 1.05666 1.23827 0.90312 0.82169 0.69729 1.90597 1.81320 1.24891 1.46978 1.84454 1.22072 1.41374 1.85129 1.22746 0.97309 0.82635 0.94655 0.91611 1.23039 1.01182 0.99424 0.95347 1.23099 1.00407 0.93718 1.01170 1.23788 1.00696 0.98137 0.81193 1.88914 1.85942 1.29472 1.26638 0.92505 0.91598 0.93846 0.88213 0.90850 0.91631 0.86506 0.86404 0.72725 0.89326 0.90425 0.88179 0.90686 0.91238 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 8.51 71.98 0.61 -3.89 16 2 C -0.07 -2.27 1.83 -10.79 -0.02 -2.29 16 3 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 4 C -0.11 -4.35 3.59 29.85 0.11 -4.24 16 5 C 0.45 22.78 7.15 87.66 0.63 23.40 16 6 O -0.61 -34.85 13.60 -3.05 -0.04 -34.89 16 7 N -0.45 -23.45 2.17 -639.59 -1.39 -24.84 16 8 C -0.34 -19.58 9.35 84.04 0.79 -18.79 16 9 H 0.08 4.84 7.37 -2.91 -0.02 4.82 16 10 C 0.00 -0.08 4.84 84.92 0.41 0.33 16 11 N -0.89 -47.36 9.32 21.66 0.20 -47.16 16 12 Si 0.99 42.74 29.61 68.60 2.03 44.77 16 13 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 16 C 0.14 6.29 4.97 85.63 0.43 6.72 16 17 C 0.50 22.11 5.91 71.24 0.42 22.53 16 18 O -0.55 -29.13 16.80 21.97 0.37 -28.77 16 19 O -0.52 -17.92 13.42 -51.46 -0.69 -18.61 16 20 C 0.08 2.21 3.15 30.97 0.10 2.31 16 21 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 22 C -0.15 -3.03 6.14 31.59 0.19 -2.83 16 23 C -0.15 -2.30 7.16 31.89 0.23 -2.07 16 24 C 0.04 0.67 7.72 72.67 0.56 1.23 16 25 O -0.39 -10.24 10.00 -148.98 -1.49 -11.73 16 26 H 0.06 1.80 7.66 -2.39 -0.02 1.78 16 27 H 0.07 1.85 6.39 -2.39 -0.02 1.84 16 28 H 0.04 1.78 5.95 -2.39 -0.01 1.76 16 29 H 0.10 3.51 7.17 -2.38 -0.02 3.49 16 30 H 0.07 2.84 7.55 -2.39 -0.02 2.82 16 31 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 32 H 0.12 4.14 6.67 -2.39 -0.02 4.13 16 33 H 0.12 5.38 6.37 -2.39 -0.02 5.37 16 34 H 0.41 10.68 9.10 -74.06 -0.67 10.01 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.65 6.23 -2.39 -0.01 1.63 16 37 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -74.20 322.14 3.83 -70.37 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.39 Total: 28.44 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 4.45 Total: 22.41 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -1.19 Total: -71.99 kcal Atomic # 8 Polarization: -92.14 SS G_CDS: -1.85 Total: -93.99 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -74.20 3.83 -70.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592226318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.115 kcal (2) G-P(sol) polarization free energy of solvation -74.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds