Wall clock time and date at job start Tue Mar 31 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46902 * 2 1 4 4 C 1.53007 * 109.47206 * 119.99584 * 2 1 3 5 5 C 1.50705 * 109.46959 * 295.00334 * 4 2 1 6 6 O 1.21287 * 120.00109 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99820 * 179.97438 * 5 4 2 8 8 C 1.37092 * 120.00008 * 180.02562 * 7 5 4 9 9 H 1.08000 * 120.00251 * 343.51658 * 8 7 5 10 10 C 1.38954 * 120.00118 * 163.52527 * 8 7 5 11 11 N 1.31412 * 120.00060 * 338.95109 * 10 8 7 12 12 Si 1.86804 * 120.00011 * 158.67828 * 10 8 7 13 13 H 1.48500 * 109.47050 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.46966 * 119.99901 * 12 10 8 15 15 H 1.48502 * 109.46837 * 239.99835 * 12 10 8 16 16 C 1.46510 * 120.00045 * 0.02562 * 7 5 4 17 17 C 1.50706 * 109.46824 * 276.00492 * 16 7 5 18 18 O 1.20821 * 119.99809 * 359.97438 * 17 16 7 19 19 O 1.34225 * 119.99758 * 180.02562 * 17 16 7 20 20 C 1.53000 * 109.47538 * 239.99706 * 2 1 3 21 21 H 1.08992 * 110.33235 * 187.24951 * 20 2 1 22 22 C 1.54482 * 110.37170 * 64.99742 * 20 2 1 23 23 C 1.54508 * 104.06341 * 217.19302 * 22 20 2 24 24 C 1.54475 * 104.06023 * 359.97438 * 23 22 20 25 25 O 1.44416 * 104.80786 * 23.98268 * 24 23 22 26 26 H 1.09000 * 109.46736 * 60.00751 * 1 2 3 27 27 H 1.09002 * 109.46902 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47320 * 300.00185 * 1 2 3 29 29 H 1.08998 * 109.47223 * 175.00114 * 4 2 1 30 30 H 1.09001 * 109.46890 * 54.99761 * 4 2 1 31 31 H 0.96994 * 119.99852 * 179.97438 * 11 10 8 32 32 H 1.08997 * 109.46812 * 36.00354 * 16 7 5 33 33 H 1.09000 * 109.46949 * 156.00402 * 16 7 5 34 34 H 0.96699 * 116.99794 * 180.02562 * 19 17 16 35 35 H 1.09000 * 110.50962 * 335.84144 * 22 20 2 36 36 H 1.09004 * 110.50726 * 98.40887 * 22 20 2 37 37 H 1.09003 * 110.50917 * 118.64609 * 23 22 20 38 38 H 1.09001 * 110.50721 * 241.21977 * 23 22 20 39 39 H 1.09006 * 110.36663 * 142.81213 * 24 23 22 40 40 H 1.08993 * 110.37441 * 265.14344 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0572 2.4767 6 8 1.0116 1.0876 2.3632 7 7 1.9844 -0.3917 3.7002 8 6 1.6212 0.3161 4.8167 9 1 1.3041 1.3444 4.7248 10 6 1.6613 -0.2894 6.0668 11 7 1.6361 -1.5998 6.1632 12 14 1.7587 0.7590 7.6098 13 1 1.7806 2.1950 7.2320 14 1 0.5759 0.4900 8.4664 15 1 2.9976 0.4254 8.3575 16 6 2.7456 -1.6360 3.8372 17 6 1.8000 -2.8091 3.8068 18 8 0.6123 -2.6246 3.6839 19 8 2.2772 -4.0588 3.9174 20 6 2.0401 -0.7213 -1.2492 21 1 3.1222 -0.8425 -1.2012 22 6 1.6424 0.0597 -2.5213 23 6 1.3103 -1.0435 -3.5508 24 6 1.5474 -2.3605 -2.7791 25 8 1.3947 -2.0056 -1.3876 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 3.1264 -0.7994 1.2057 30 1 1.6054 -1.7197 1.2953 31 1 1.6645 -2.0224 7.0358 32 1 3.4554 -1.7201 3.0143 33 1 3.2858 -1.6291 4.7839 34 1 1.6322 -4.7788 3.8921 35 1 0.7667 0.6801 -2.3303 36 1 2.4744 0.6720 -2.8693 37 1 0.2704 -0.9686 -3.8688 38 1 1.9774 -0.9770 -4.4102 39 1 0.8052 -3.1062 -3.0642 40 1 2.5538 -2.7346 -2.9671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592226334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:26 Heat of formation + Delta-G solvation = -168.760294 kcal Electronic energy + Delta-G solvation = -24028.751502 eV Core-core repulsion = 20422.903061 eV Total energy + Delta-G solvation = -3605.848440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.77616 -39.23677 -38.10410 -35.37270 -34.63946 -33.84287 -32.01190 -31.71368 -28.50577 -27.59850 -27.10898 -24.68332 -23.32700 -21.45100 -21.03938 -19.90637 -18.51647 -17.12590 -16.85982 -16.47012 -16.22483 -15.68992 -15.48723 -15.16510 -14.49142 -14.40866 -14.25768 -13.95665 -13.68527 -13.11098 -13.02250 -12.35755 -12.07065 -11.80009 -11.65219 -11.58425 -11.54540 -11.30982 -11.17124 -10.97179 -10.88574 -10.46586 -10.41996 -10.36452 -10.31590 -10.22794 -10.13594 -9.60160 -9.56679 -9.00165 -8.35908 -7.86314 -6.41168 -3.85101 3.14795 3.26343 3.33664 3.51500 3.70641 3.99525 4.11335 4.29591 4.57635 4.67752 4.85428 4.94165 5.06148 5.16345 5.26782 5.38444 5.47522 5.57655 5.69481 5.72558 5.81767 5.85600 5.94929 5.96075 6.03924 6.16286 6.31108 6.39872 6.52388 6.55712 6.64154 6.77756 7.00833 7.09238 7.54183 7.58707 8.04032 8.41456 9.08506 9.13974 9.36121 9.90748 10.67851 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025038 B = 0.004967 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.044330 B = 5636.286415 C = 6409.762349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 H 0.086 0.914 4 C -0.130 4.130 5 C 0.465 3.535 6 O -0.573 6.573 7 N -0.436 5.436 8 C -0.303 4.303 9 H 0.108 0.892 10 C 0.027 3.973 11 N -0.884 5.884 12 Si 0.927 3.073 13 H -0.268 1.268 14 H -0.283 1.283 15 H -0.280 1.280 16 C 0.147 3.853 17 C 0.489 3.511 18 O -0.503 6.503 19 O -0.535 6.535 20 C 0.078 3.922 21 H 0.066 0.934 22 C -0.153 4.153 23 C -0.154 4.154 24 C 0.043 3.957 25 O -0.363 6.363 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.269 0.731 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.391 0.609 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.928 -3.244 -13.528 14.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 H 0.104 0.896 4 C -0.170 4.170 5 C 0.254 3.746 6 O -0.457 6.457 7 N -0.155 5.155 8 C -0.430 4.430 9 H 0.125 0.875 10 C -0.175 4.175 11 N -0.524 5.524 12 Si 0.754 3.246 13 H -0.192 1.192 14 H -0.210 1.210 15 H -0.206 1.206 16 C 0.020 3.980 17 C 0.329 3.671 18 O -0.388 6.388 19 O -0.346 6.346 20 C 0.020 3.980 21 H 0.084 0.916 22 C -0.191 4.191 23 C -0.192 4.192 24 C -0.034 4.034 25 O -0.281 6.281 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.146 0.854 34 H 0.248 0.752 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.455 -2.576 -13.264 14.228 hybrid contribution -0.332 -0.354 0.757 0.900 sum 4.123 -2.930 -12.507 13.491 Atomic orbital electron populations 1.21831 0.94131 1.01920 1.02191 1.20867 0.97683 0.98589 0.90908 0.89573 1.21645 1.00887 1.00583 0.93867 1.20071 0.82749 0.87590 0.84188 1.90474 1.42864 1.26295 1.86040 1.43481 1.47766 1.18748 1.05550 1.19750 1.43755 0.96479 0.82999 0.87477 1.25222 0.97077 0.95707 0.99483 1.69811 1.48679 1.08599 1.25317 0.85844 0.77716 0.80187 0.80832 1.19205 1.20952 1.20623 1.20666 0.91513 0.81439 1.04392 1.23845 0.89646 0.82832 0.70759 1.90615 1.17950 1.85095 1.45094 1.84519 1.45763 1.17631 1.86721 1.23146 0.96174 0.83411 0.95276 0.91638 1.23044 1.02651 0.98479 0.94926 1.22916 1.02359 0.95305 0.98625 1.23347 1.00856 0.96815 0.82406 1.89201 1.77966 1.35914 1.25061 0.93946 0.92842 0.90140 0.90797 0.89863 0.92035 0.90588 0.85449 0.75231 0.89981 0.90828 0.90924 0.90988 0.89509 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.51 37.16 0.32 -2.32 16 2 C -0.06 -1.05 1.89 -90.61 -0.17 -1.22 16 3 H 0.09 1.47 7.95 -51.93 -0.41 1.06 16 4 C -0.13 -2.49 3.70 -27.88 -0.10 -2.59 16 5 C 0.46 11.30 7.13 -10.98 -0.08 11.22 16 6 O -0.57 -15.46 13.61 5.55 0.08 -15.39 16 7 N -0.44 -11.06 2.18 -116.09 -0.25 -11.32 16 8 C -0.30 -8.37 9.35 -14.93 -0.14 -8.51 16 9 H 0.11 3.10 7.37 -52.49 -0.39 2.72 16 10 C 0.03 0.71 4.89 -17.47 -0.09 0.63 16 11 N -0.88 -23.49 9.26 55.50 0.51 -22.97 16 12 Si 0.93 20.66 29.60 -169.99 -5.03 15.63 16 13 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 16 C 0.15 3.24 4.97 -5.19 -0.03 3.21 16 17 C 0.49 11.12 5.86 36.01 0.21 11.33 16 18 O -0.50 -13.42 16.80 -18.75 -0.31 -13.74 16 19 O -0.54 -9.93 13.42 -39.24 -0.53 -10.45 16 20 C 0.08 1.07 2.95 -25.95 -0.08 0.99 16 21 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 22 C -0.15 -1.72 6.47 -25.16 -0.16 -1.88 16 23 C -0.15 -1.48 7.09 -25.17 -0.18 -1.66 16 24 C 0.04 0.47 7.63 37.93 0.29 0.76 16 25 O -0.36 -5.45 10.22 -35.23 -0.36 -5.81 16 26 H 0.04 0.66 6.39 -51.93 -0.33 0.33 16 27 H 0.05 1.02 7.51 -51.93 -0.39 0.63 16 28 H 0.08 1.76 5.95 -51.93 -0.31 1.45 16 29 H 0.07 1.21 7.42 -51.93 -0.39 0.83 16 30 H 0.08 1.70 7.49 -51.93 -0.39 1.31 16 31 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.08 1.37 6.69 -51.93 -0.35 1.02 16 33 H 0.13 2.91 6.34 -51.93 -0.33 2.58 16 34 H 0.39 5.66 9.10 45.56 0.41 6.07 16 35 H 0.08 0.97 6.11 -51.93 -0.32 0.65 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 322.33 15.07 4.86 4.86 Total: -1.00 -33.58 322.33 -6.10 -39.68 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -4.85 Total: 9.52 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -0.21 Total: 9.97 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.26 Total: -34.29 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -1.13 Total: -45.38 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.58 -6.10 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592226334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.076 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds