Wall clock time and date at job start Tue Mar 31 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46902 * 2 1 4 4 C 1.53007 * 109.47206 * 119.99584 * 2 1 3 5 5 C 1.50705 * 109.46959 * 295.00334 * 4 2 1 6 6 O 1.21287 * 120.00109 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99820 * 179.97438 * 5 4 2 8 8 C 1.37092 * 120.00008 * 180.02562 * 7 5 4 9 9 H 1.08000 * 120.00251 * 343.51658 * 8 7 5 10 10 C 1.38954 * 120.00118 * 163.52527 * 8 7 5 11 11 N 1.31412 * 120.00060 * 338.95109 * 10 8 7 12 12 Si 1.86804 * 120.00011 * 158.67828 * 10 8 7 13 13 H 1.48500 * 109.47050 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.46966 * 119.99901 * 12 10 8 15 15 H 1.48502 * 109.46837 * 239.99835 * 12 10 8 16 16 C 1.46510 * 120.00045 * 0.02562 * 7 5 4 17 17 C 1.50706 * 109.46824 * 276.00492 * 16 7 5 18 18 O 1.20821 * 119.99809 * 359.97438 * 17 16 7 19 19 O 1.34225 * 119.99758 * 180.02562 * 17 16 7 20 20 C 1.53000 * 109.47538 * 239.99706 * 2 1 3 21 21 H 1.08992 * 110.33235 * 187.24951 * 20 2 1 22 22 C 1.54482 * 110.37170 * 64.99742 * 20 2 1 23 23 C 1.54508 * 104.06341 * 217.19302 * 22 20 2 24 24 C 1.54475 * 104.06023 * 359.97438 * 23 22 20 25 25 O 1.44416 * 104.80786 * 23.98268 * 24 23 22 26 26 H 1.09000 * 109.46736 * 60.00751 * 1 2 3 27 27 H 1.09002 * 109.46902 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47320 * 300.00185 * 1 2 3 29 29 H 1.08998 * 109.47223 * 175.00114 * 4 2 1 30 30 H 1.09001 * 109.46890 * 54.99761 * 4 2 1 31 31 H 0.96994 * 119.99852 * 179.97438 * 11 10 8 32 32 H 1.08997 * 109.46812 * 36.00354 * 16 7 5 33 33 H 1.09000 * 109.46949 * 156.00402 * 16 7 5 34 34 H 0.96699 * 116.99794 * 180.02562 * 19 17 16 35 35 H 1.09000 * 110.50962 * 335.84144 * 22 20 2 36 36 H 1.09004 * 110.50726 * 98.40887 * 22 20 2 37 37 H 1.09003 * 110.50917 * 118.64609 * 23 22 20 38 38 H 1.09001 * 110.50721 * 241.21977 * 23 22 20 39 39 H 1.09006 * 110.36663 * 142.81213 * 24 23 22 40 40 H 1.08993 * 110.37441 * 265.14344 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0572 2.4767 6 8 1.0116 1.0876 2.3632 7 7 1.9844 -0.3917 3.7002 8 6 1.6212 0.3161 4.8167 9 1 1.3041 1.3444 4.7248 10 6 1.6613 -0.2894 6.0668 11 7 1.6361 -1.5998 6.1632 12 14 1.7587 0.7590 7.6098 13 1 1.7806 2.1950 7.2320 14 1 0.5759 0.4900 8.4664 15 1 2.9976 0.4254 8.3575 16 6 2.7456 -1.6360 3.8372 17 6 1.8000 -2.8091 3.8068 18 8 0.6123 -2.6246 3.6839 19 8 2.2772 -4.0588 3.9174 20 6 2.0401 -0.7213 -1.2492 21 1 3.1222 -0.8425 -1.2012 22 6 1.6424 0.0597 -2.5213 23 6 1.3103 -1.0435 -3.5508 24 6 1.5474 -2.3605 -2.7791 25 8 1.3947 -2.0056 -1.3876 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 3.1264 -0.7994 1.2057 30 1 1.6054 -1.7197 1.2953 31 1 1.6645 -2.0224 7.0358 32 1 3.4554 -1.7201 3.0143 33 1 3.2858 -1.6291 4.7839 34 1 1.6322 -4.7788 3.8921 35 1 0.7667 0.6801 -2.3303 36 1 2.4744 0.6720 -2.8693 37 1 0.2704 -0.9686 -3.8688 38 1 1.9774 -0.9770 -4.4102 39 1 0.8052 -3.1062 -3.0642 40 1 2.5538 -2.7346 -2.9671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592226334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:25 Heat of formation + Delta-G solvation = -192.121689 kcal Electronic energy + Delta-G solvation = -24029.764528 eV Core-core repulsion = 20422.903061 eV Total energy + Delta-G solvation = -3606.861466 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34103 -40.58591 -39.81512 -37.12782 -36.41670 -35.38013 -33.73539 -32.87981 -29.91354 -29.28598 -28.52124 -26.51319 -24.52814 -22.84687 -22.31493 -21.22759 -20.20220 -19.00121 -18.67475 -18.11905 -17.43123 -17.20365 -16.80220 -16.37068 -16.21031 -16.11448 -15.85233 -15.63725 -14.81279 -14.60721 -14.28544 -14.00107 -13.79645 -13.52364 -13.31940 -13.08554 -12.72209 -12.58684 -12.46944 -12.46136 -12.26323 -12.13014 -12.09996 -12.03495 -11.70982 -11.64022 -11.44734 -11.27346 -10.94409 -10.59035 -10.26985 -9.83364 -8.41579 -5.93037 1.35931 1.42823 1.57302 1.72564 1.90731 2.27976 2.55815 2.96777 3.05841 3.12946 3.67380 3.78090 3.95952 4.05171 4.10017 4.15361 4.27703 4.43905 4.46422 4.53330 4.69995 4.74074 4.80281 4.83946 4.90768 4.91914 4.98389 5.01936 5.04515 5.21031 5.29065 5.38592 5.46507 5.55270 5.96096 6.04494 6.05900 6.42193 7.14044 7.33163 7.47819 7.98060 8.65456 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025038 B = 0.004967 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.044330 B = 5636.286415 C = 6409.762349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 H 0.084 0.916 4 C -0.117 4.117 5 C 0.452 3.548 6 O -0.611 6.611 7 N -0.450 5.450 8 C -0.339 4.339 9 H 0.079 0.921 10 C -0.003 4.003 11 N -0.896 5.896 12 Si 0.992 3.008 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.260 1.260 16 C 0.144 3.856 17 C 0.496 3.504 18 O -0.550 6.550 19 O -0.519 6.519 20 C 0.081 3.919 21 H 0.085 0.915 22 C -0.153 4.153 23 C -0.148 4.148 24 C 0.035 3.965 25 O -0.396 6.396 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.273 0.727 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.732 -4.120 -14.765 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.079 4.079 3 H 0.102 0.898 4 C -0.157 4.157 5 C 0.243 3.757 6 O -0.497 6.497 7 N -0.169 5.169 8 C -0.466 4.466 9 H 0.097 0.903 10 C -0.204 4.204 11 N -0.536 5.536 12 Si 0.816 3.184 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.185 1.185 16 C 0.018 3.982 17 C 0.338 3.662 18 O -0.439 6.439 19 O -0.331 6.331 20 C 0.023 3.977 21 H 0.103 0.897 22 C -0.190 4.190 23 C -0.185 4.185 24 C -0.041 4.041 25 O -0.315 6.315 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.126 0.874 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.272 0.728 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.294 -3.512 -14.511 16.202 hybrid contribution -0.927 -0.171 1.137 1.477 sum 5.367 -3.683 -13.374 14.874 Atomic orbital electron populations 1.21690 0.95663 1.00632 1.01186 1.20861 0.96371 0.98864 0.91829 0.89809 1.21607 1.02875 0.99062 0.92181 1.21015 0.81913 0.87392 0.85370 1.90442 1.44389 1.28120 1.86788 1.43663 1.48113 1.19750 1.05384 1.19659 1.46054 0.96059 0.84832 0.90321 1.25964 0.95955 0.96893 1.01600 1.69892 1.48097 1.09507 1.26100 0.84905 0.78138 0.78284 0.77079 1.19687 1.21220 1.18488 1.20832 0.91544 0.80084 1.05734 1.23900 0.88856 0.83980 0.69431 1.90606 1.19880 1.85995 1.47467 1.84445 1.45952 1.16918 1.85764 1.23110 0.96859 0.83324 0.94384 0.89732 1.23049 1.03027 0.98788 0.94153 1.22908 1.03143 0.93720 0.98758 1.23592 1.02165 0.97734 0.80630 1.89170 1.78448 1.36317 1.27607 0.91576 0.94127 0.94418 0.87404 0.90928 0.91679 0.86246 0.86230 0.72836 0.91103 0.88658 0.90838 0.88436 0.88801 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 8.51 71.98 0.61 -4.45 16 2 C -0.06 -2.02 1.89 -10.79 -0.02 -2.04 16 3 H 0.08 2.84 7.95 -2.39 -0.02 2.82 16 4 C -0.12 -4.45 3.70 29.85 0.11 -4.34 16 5 C 0.45 22.57 7.13 87.66 0.62 23.20 16 6 O -0.61 -34.61 13.61 -3.05 -0.04 -34.65 16 7 N -0.45 -23.29 2.18 -639.58 -1.39 -24.69 16 8 C -0.34 -19.33 9.35 84.04 0.79 -18.55 16 9 H 0.08 4.82 7.37 -2.91 -0.02 4.80 16 10 C 0.00 -0.17 4.89 84.93 0.42 0.24 16 11 N -0.90 -47.56 9.26 21.66 0.20 -47.36 16 12 Si 0.99 42.67 29.60 68.60 2.03 44.70 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 15 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 16 C 0.14 6.25 4.97 85.63 0.43 6.68 16 17 C 0.50 22.27 5.86 71.24 0.42 22.69 16 18 O -0.55 -29.81 16.80 21.98 0.37 -29.44 16 19 O -0.52 -18.23 13.42 -51.36 -0.69 -18.92 16 20 C 0.08 2.04 2.95 31.10 0.09 2.13 16 21 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 22 C -0.15 -3.00 6.47 31.61 0.20 -2.79 16 23 C -0.15 -2.36 7.09 31.61 0.22 -2.13 16 24 C 0.04 0.67 7.63 72.48 0.55 1.22 16 25 O -0.40 -11.19 10.22 -148.98 -1.52 -12.71 16 26 H 0.07 2.09 6.39 -2.39 -0.02 2.08 16 27 H 0.04 1.58 7.51 -2.39 -0.02 1.57 16 28 H 0.04 1.73 5.95 -2.39 -0.01 1.71 16 29 H 0.11 3.29 7.42 -2.39 -0.02 3.27 16 30 H 0.07 2.94 7.49 -2.39 -0.02 2.93 16 31 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 32 H 0.12 4.04 6.69 -2.39 -0.02 4.02 16 33 H 0.12 5.40 6.34 -2.39 -0.02 5.38 16 34 H 0.41 11.07 9.10 -74.06 -0.67 10.39 16 35 H 0.07 1.54 6.11 -2.39 -0.01 1.53 16 36 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -75.81 322.33 3.79 -72.02 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.39 Total: 29.19 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 4.44 Total: 21.86 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.19 Total: -72.05 kcal Atomic # 8 Polarization: -93.84 SS G_CDS: -1.88 Total: -95.72 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -75.81 3.79 -72.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592226334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.100 kcal (2) G-P(sol) polarization free energy of solvation -75.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds