Wall clock time and date at job start Tue Mar 31 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47432 * 2 1 4 4 C 1.52996 * 109.47084 * 119.99913 * 2 1 3 5 5 C 1.50703 * 109.47066 * 294.99605 * 4 2 1 6 6 O 1.21288 * 120.00295 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00022 * 179.97438 * 5 4 2 8 8 C 1.37093 * 120.00203 * 180.02562 * 7 5 4 9 9 H 1.08005 * 119.99915 * 344.56947 * 8 7 5 10 10 C 1.38947 * 120.00509 * 164.56581 * 8 7 5 11 11 N 1.31419 * 119.99605 * 336.77186 * 10 8 7 12 12 Si 1.86799 * 120.00495 * 156.77149 * 10 8 7 13 13 H 1.48502 * 109.47154 * 265.57619 * 12 10 8 14 14 H 1.48502 * 109.46954 * 25.57345 * 12 10 8 15 15 H 1.48496 * 109.47474 * 145.57302 * 12 10 8 16 16 C 1.46507 * 120.00154 * 359.97438 * 7 5 4 17 17 C 1.50698 * 109.47312 * 275.45234 * 16 7 5 18 18 O 1.20824 * 120.00255 * 359.97438 * 17 16 7 19 19 O 1.34234 * 119.99835 * 179.97438 * 17 16 7 20 20 C 1.53003 * 109.47528 * 239.99764 * 2 1 3 21 21 H 1.09000 * 110.27066 * 300.64238 * 20 2 1 22 22 C 1.54950 * 110.30909 * 62.83134 * 20 2 1 23 23 C 1.55301 * 100.94200 * 155.36119 * 22 20 2 24 24 C 1.54381 * 102.25426 * 325.87053 * 23 22 20 25 25 O 1.43239 * 107.58800 * 21.35488 * 24 23 22 26 26 H 1.08996 * 109.47192 * 300.00276 * 1 2 3 27 27 H 1.09007 * 109.47020 * 60.00363 * 1 2 3 28 28 H 1.09000 * 109.47432 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47640 * 175.00193 * 4 2 1 30 30 H 1.09001 * 109.47591 * 54.99768 * 4 2 1 31 31 H 0.97003 * 119.99827 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.46419 * 35.45113 * 16 7 5 33 33 H 1.08997 * 109.46702 * 155.44744 * 16 7 5 34 34 H 0.96695 * 116.99798 * 179.97438 * 19 17 16 35 35 H 1.08999 * 111.12405 * 273.28804 * 22 20 2 36 36 H 1.09007 * 111.12268 * 37.44788 * 22 20 2 37 37 H 1.09003 * 110.84917 * 207.67569 * 23 22 20 38 38 H 1.08998 * 111.01905 * 84.13618 * 23 22 20 39 39 H 1.08999 * 109.83133 * 261.83983 * 24 23 22 40 40 H 1.09000 * 109.83194 * 140.86786 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6413 0.0572 2.4766 6 8 1.0109 1.0872 2.3633 7 7 1.9844 -0.3917 3.7002 8 6 1.6213 0.3161 4.8167 9 1 1.2881 1.3391 4.7229 10 6 1.6820 -0.2826 6.0691 11 7 1.6338 -1.5917 6.1746 12 14 1.8321 0.7730 7.6029 13 1 3.2637 0.9048 7.9749 14 1 1.2644 2.1188 7.3349 15 1 1.0876 0.1348 8.7180 16 6 2.7444 -1.6368 3.8372 17 6 1.7966 -2.8083 3.8210 18 8 0.6082 -2.6224 3.7073 19 8 2.2727 -4.0583 3.9331 20 6 2.0400 -0.7213 -1.2492 21 1 1.6746 -1.7480 -1.2681 22 6 1.5938 0.0342 -2.5263 23 6 2.6825 -0.4232 -3.5350 24 6 3.9300 -0.5516 -2.6347 25 8 3.4758 -0.7023 -1.2846 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 3.1263 -0.7995 1.2057 30 1 1.6053 -1.7198 1.2952 31 1 1.6765 -2.0097 7.0489 32 1 3.4471 -1.7264 3.0087 33 1 3.2927 -1.6258 4.7791 34 1 1.6263 -4.7773 3.9179 35 1 0.6023 -0.2864 -2.8461 36 1 1.6262 1.1133 -2.3759 37 1 2.8371 0.3304 -4.3072 38 1 2.4245 -1.3844 -3.9796 39 1 4.5422 0.3462 -2.7209 40 1 4.5103 -1.4259 -2.9294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592226335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:29 Heat of formation + Delta-G solvation = -171.328135 kcal Electronic energy + Delta-G solvation = -23930.702380 eV Core-core repulsion = 20324.742589 eV Total energy + Delta-G solvation = -3605.959790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.75658 -39.24849 -38.12037 -35.41013 -34.69159 -33.94843 -32.10099 -31.71334 -28.55766 -27.61891 -27.15971 -24.59510 -22.94887 -21.63703 -21.07931 -20.10035 -18.57085 -17.13829 -16.87076 -16.65641 -16.42332 -15.65461 -15.58110 -14.95674 -14.44590 -14.41040 -14.26008 -13.88485 -13.45702 -13.19519 -12.96315 -12.32977 -12.11430 -12.02376 -11.80010 -11.68896 -11.56222 -11.33897 -11.20226 -11.00519 -10.96341 -10.62814 -10.45029 -10.40225 -10.35165 -10.27280 -10.13572 -9.58865 -9.36679 -8.99627 -8.34500 -7.86690 -6.41654 -3.83267 3.16552 3.26961 3.32849 3.49106 3.70177 3.86322 4.11720 4.29225 4.46475 4.63960 4.80875 4.92845 5.08654 5.16263 5.23877 5.35699 5.53388 5.59564 5.67022 5.67593 5.78672 5.82105 5.92468 5.98024 6.05855 6.13253 6.19709 6.36049 6.43980 6.54647 6.62324 6.77248 6.92080 7.18119 7.51696 7.58925 8.04503 8.42105 9.06101 9.14592 9.36849 9.91864 10.67528 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022926 B = 0.004855 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.021618 B = 5766.117586 C = 6288.385757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 H 0.082 0.918 4 C -0.128 4.128 5 C 0.465 3.535 6 O -0.574 6.574 7 N -0.435 5.435 8 C -0.304 4.304 9 H 0.108 0.892 10 C 0.028 3.972 11 N -0.881 5.881 12 Si 0.927 3.073 13 H -0.278 1.278 14 H -0.269 1.269 15 H -0.286 1.286 16 C 0.146 3.854 17 C 0.489 3.511 18 O -0.504 6.504 19 O -0.535 6.535 20 C 0.084 3.916 21 H 0.068 0.932 22 C -0.149 4.149 23 C -0.157 4.157 24 C 0.051 3.949 25 O -0.377 6.377 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.269 0.731 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.391 0.609 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.466 -3.115 -13.729 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 H 0.100 0.900 4 C -0.168 4.168 5 C 0.254 3.746 6 O -0.458 6.458 7 N -0.155 5.155 8 C -0.431 4.431 9 H 0.126 0.874 10 C -0.174 4.174 11 N -0.522 5.522 12 Si 0.754 3.246 13 H -0.204 1.204 14 H -0.194 1.194 15 H -0.212 1.212 16 C 0.019 3.981 17 C 0.329 3.671 18 O -0.389 6.389 19 O -0.346 6.346 20 C 0.027 3.973 21 H 0.086 0.914 22 C -0.187 4.187 23 C -0.195 4.195 24 C -0.026 4.026 25 O -0.297 6.297 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.144 0.856 34 H 0.247 0.753 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.227 -2.348 -13.461 14.303 hybrid contribution -0.538 -0.444 0.755 1.028 sum 3.689 -2.792 -12.706 13.522 Atomic orbital electron populations 1.21905 0.94029 1.01416 1.03190 1.20924 0.96266 0.99838 0.91393 0.89997 1.21595 1.01959 0.99564 0.93697 1.20076 0.82709 0.87635 0.84163 1.90468 1.42951 1.26341 1.86049 1.43483 1.47759 1.18659 1.05574 1.19725 1.43583 0.96939 0.82868 0.87443 1.25202 0.97124 0.95739 0.99384 1.69843 1.48049 1.08995 1.25266 0.85896 0.78222 0.80058 0.80457 1.20380 1.19357 1.21195 1.20673 0.91587 0.81426 1.04445 1.23883 0.89677 0.82796 0.70704 1.90606 1.17941 1.85050 1.45272 1.84533 1.45656 1.17663 1.86742 1.23138 0.80460 0.98571 0.95125 0.91391 1.23297 0.99157 1.01596 0.94611 1.23124 0.95554 1.02167 0.98660 1.23068 0.96229 1.00936 0.82386 1.88443 1.20874 1.94692 1.25648 0.89383 0.93518 0.93600 0.89752 0.90811 0.92021 0.90296 0.85594 0.75275 0.89976 0.90100 0.90334 0.90783 0.91603 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.74 37.15 0.32 -2.19 16 2 C -0.07 -1.11 1.80 -90.62 -0.16 -1.28 16 3 H 0.08 1.51 7.96 -51.93 -0.41 1.09 16 4 C -0.13 -2.48 3.72 -27.88 -0.10 -2.59 16 5 C 0.46 11.37 7.16 -10.98 -0.08 11.29 16 6 O -0.57 -15.56 13.60 5.55 0.08 -15.48 16 7 N -0.44 -11.11 2.17 -116.09 -0.25 -11.36 16 8 C -0.30 -8.44 9.35 -14.94 -0.14 -8.58 16 9 H 0.11 3.13 7.37 -52.48 -0.39 2.75 16 10 C 0.03 0.73 4.84 -17.47 -0.08 0.65 16 11 N -0.88 -23.43 9.32 55.50 0.52 -22.91 16 12 Si 0.93 20.73 29.61 -169.99 -5.03 15.70 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 16 C 0.15 3.23 4.97 -5.19 -0.03 3.21 16 17 C 0.49 11.01 5.91 36.00 0.21 11.22 16 18 O -0.50 -13.21 16.80 -18.75 -0.31 -13.52 16 19 O -0.53 -9.79 13.42 -39.27 -0.53 -10.31 16 20 C 0.08 1.17 2.96 -25.70 -0.08 1.10 16 21 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 22 C -0.15 -1.64 5.55 -24.48 -0.14 -1.77 16 23 C -0.16 -1.43 7.02 -24.79 -0.17 -1.61 16 24 C 0.05 0.55 7.79 37.88 0.30 0.84 16 25 O -0.38 -5.53 10.39 -35.23 -0.37 -5.90 16 26 H 0.09 1.84 5.95 -51.93 -0.31 1.53 16 27 H 0.05 0.66 7.28 -51.93 -0.38 0.28 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.53 6.89 -51.93 -0.36 1.17 16 30 H 0.07 1.43 7.55 -51.93 -0.39 1.04 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.08 1.46 6.67 -51.93 -0.35 1.11 16 33 H 0.13 2.90 6.37 -51.93 -0.33 2.57 16 34 H 0.39 5.50 9.10 45.56 0.41 5.91 16 35 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 36 H 0.08 0.91 8.06 -51.92 -0.42 0.49 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 324.86 15.07 4.90 4.90 Total: -1.00 -33.31 324.86 -6.16 -39.48 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.01 Total: 9.12 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -0.15 Total: 10.30 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.27 Total: -34.27 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -1.13 Total: -45.21 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.31 -6.16 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592226335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.851 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds