Wall clock time and date at job start Tue Mar 31 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47432 * 2 1 4 4 C 1.52996 * 109.47084 * 119.99913 * 2 1 3 5 5 C 1.50703 * 109.47066 * 294.99605 * 4 2 1 6 6 O 1.21288 * 120.00295 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00022 * 179.97438 * 5 4 2 8 8 C 1.37093 * 120.00203 * 180.02562 * 7 5 4 9 9 H 1.08005 * 119.99915 * 344.56947 * 8 7 5 10 10 C 1.38947 * 120.00509 * 164.56581 * 8 7 5 11 11 N 1.31419 * 119.99605 * 336.77186 * 10 8 7 12 12 Si 1.86799 * 120.00495 * 156.77149 * 10 8 7 13 13 H 1.48502 * 109.47154 * 265.57619 * 12 10 8 14 14 H 1.48502 * 109.46954 * 25.57345 * 12 10 8 15 15 H 1.48496 * 109.47474 * 145.57302 * 12 10 8 16 16 C 1.46507 * 120.00154 * 359.97438 * 7 5 4 17 17 C 1.50698 * 109.47312 * 275.45234 * 16 7 5 18 18 O 1.20824 * 120.00255 * 359.97438 * 17 16 7 19 19 O 1.34234 * 119.99835 * 179.97438 * 17 16 7 20 20 C 1.53003 * 109.47528 * 239.99764 * 2 1 3 21 21 H 1.09000 * 110.27066 * 300.64238 * 20 2 1 22 22 C 1.54950 * 110.30909 * 62.83134 * 20 2 1 23 23 C 1.55301 * 100.94200 * 155.36119 * 22 20 2 24 24 C 1.54381 * 102.25426 * 325.87053 * 23 22 20 25 25 O 1.43239 * 107.58800 * 21.35488 * 24 23 22 26 26 H 1.08996 * 109.47192 * 300.00276 * 1 2 3 27 27 H 1.09007 * 109.47020 * 60.00363 * 1 2 3 28 28 H 1.09000 * 109.47432 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47640 * 175.00193 * 4 2 1 30 30 H 1.09001 * 109.47591 * 54.99768 * 4 2 1 31 31 H 0.97003 * 119.99827 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.46419 * 35.45113 * 16 7 5 33 33 H 1.08997 * 109.46702 * 155.44744 * 16 7 5 34 34 H 0.96695 * 116.99798 * 179.97438 * 19 17 16 35 35 H 1.08999 * 111.12405 * 273.28804 * 22 20 2 36 36 H 1.09007 * 111.12268 * 37.44788 * 22 20 2 37 37 H 1.09003 * 110.84917 * 207.67569 * 23 22 20 38 38 H 1.08998 * 111.01905 * 84.13618 * 23 22 20 39 39 H 1.08999 * 109.83133 * 261.83983 * 24 23 22 40 40 H 1.09000 * 109.83194 * 140.86786 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6413 0.0572 2.4766 6 8 1.0109 1.0872 2.3633 7 7 1.9844 -0.3917 3.7002 8 6 1.6213 0.3161 4.8167 9 1 1.2881 1.3391 4.7229 10 6 1.6820 -0.2826 6.0691 11 7 1.6338 -1.5917 6.1746 12 14 1.8321 0.7730 7.6029 13 1 3.2637 0.9048 7.9749 14 1 1.2644 2.1188 7.3349 15 1 1.0876 0.1348 8.7180 16 6 2.7444 -1.6368 3.8372 17 6 1.7966 -2.8083 3.8210 18 8 0.6082 -2.6224 3.7073 19 8 2.2727 -4.0583 3.9331 20 6 2.0400 -0.7213 -1.2492 21 1 1.6746 -1.7480 -1.2681 22 6 1.5938 0.0342 -2.5263 23 6 2.6825 -0.4232 -3.5350 24 6 3.9300 -0.5516 -2.6347 25 8 3.4758 -0.7023 -1.2846 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 3.1263 -0.7995 1.2057 30 1 1.6053 -1.7198 1.2952 31 1 1.6765 -2.0097 7.0489 32 1 3.4471 -1.7264 3.0087 33 1 3.2927 -1.6258 4.7791 34 1 1.6263 -4.7773 3.9179 35 1 0.6023 -0.2864 -2.8461 36 1 1.6262 1.1133 -2.3759 37 1 2.8371 0.3304 -4.3072 38 1 2.4245 -1.3844 -3.9796 39 1 4.5422 0.3462 -2.7209 40 1 4.5103 -1.4259 -2.9294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592226335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:28 Heat of formation + Delta-G solvation = -194.278275 kcal Electronic energy + Delta-G solvation = -23931.697572 eV Core-core repulsion = 20324.742589 eV Total energy + Delta-G solvation = -3606.954983 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.34053 -40.57106 -39.82874 -37.15281 -36.43116 -35.52112 -33.75856 -32.95305 -29.94809 -29.31378 -28.54405 -26.46380 -24.16282 -22.84770 -22.43306 -21.43502 -20.28888 -19.00770 -18.68769 -18.12718 -17.65422 -17.37100 -16.87176 -16.27085 -16.20156 -16.07597 -15.83619 -15.50300 -14.83032 -14.44598 -14.14628 -13.92795 -13.78879 -13.55333 -13.33694 -13.29524 -12.84431 -12.70735 -12.65985 -12.38451 -12.21971 -12.17926 -12.10074 -12.05095 -11.75402 -11.61412 -11.56276 -11.43001 -10.93983 -10.39547 -10.24706 -9.84944 -8.43278 -5.92436 1.36727 1.42582 1.55104 1.70877 1.89783 2.26978 2.54659 2.90610 2.95356 3.12759 3.62129 3.71537 3.93055 4.05773 4.09419 4.20400 4.24777 4.37455 4.45899 4.53747 4.64478 4.70201 4.76796 4.87022 4.89098 4.91310 4.95596 5.01667 5.03334 5.14591 5.28206 5.41215 5.45316 5.51267 5.95136 6.03577 6.19744 6.41418 7.13260 7.32390 7.47028 7.97543 8.63944 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022926 B = 0.004855 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.021618 B = 5766.117586 C = 6288.385757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 H 0.062 0.938 4 C -0.114 4.114 5 C 0.452 3.548 6 O -0.612 6.612 7 N -0.449 5.449 8 C -0.341 4.341 9 H 0.078 0.922 10 C -0.001 4.001 11 N -0.893 5.893 12 Si 0.991 3.009 13 H -0.260 1.260 14 H -0.278 1.278 15 H -0.281 1.281 16 C 0.142 3.858 17 C 0.497 3.503 18 O -0.547 6.547 19 O -0.518 6.518 20 C 0.088 3.912 21 H 0.076 0.924 22 C -0.148 4.148 23 C -0.147 4.147 24 C 0.040 3.960 25 O -0.404 6.404 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.274 0.726 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.413 0.587 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 -4.332 -14.988 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 H 0.080 0.920 4 C -0.154 4.154 5 C 0.243 3.757 6 O -0.498 6.498 7 N -0.168 5.168 8 C -0.469 4.469 9 H 0.096 0.904 10 C -0.202 4.202 11 N -0.532 5.532 12 Si 0.815 3.185 13 H -0.185 1.185 14 H -0.203 1.203 15 H -0.207 1.207 16 C 0.017 3.983 17 C 0.340 3.660 18 O -0.436 6.436 19 O -0.331 6.331 20 C 0.031 3.969 21 H 0.094 0.906 22 C -0.186 4.186 23 C -0.184 4.184 24 C -0.036 4.036 25 O -0.325 6.325 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.273 0.727 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.297 -3.623 -14.728 16.066 hybrid contribution -0.841 -0.132 1.156 1.436 sum 4.456 -3.755 -13.572 14.770 Atomic orbital electron populations 1.21789 0.94183 1.01529 1.02367 1.20894 0.96197 0.98953 0.92119 0.91980 1.21545 1.02764 0.98899 0.92239 1.20998 0.81951 0.87479 0.85317 1.90436 1.44516 1.28091 1.86779 1.43657 1.48036 1.19697 1.05408 1.19616 1.46036 0.96508 0.84705 0.90398 1.25938 0.95921 0.96963 1.01425 1.69917 1.47309 1.09891 1.26068 0.84958 0.78951 0.77863 0.76732 1.18477 1.20278 1.20670 1.20808 0.91669 0.80331 1.05540 1.23800 0.88821 0.83882 0.69538 1.90597 1.19642 1.85919 1.47448 1.84454 1.45904 1.16918 1.85780 1.23034 0.80616 0.98804 0.94491 0.90632 1.23304 1.00710 1.00937 0.93630 1.23113 0.93564 1.03549 0.98207 1.23321 0.97260 1.01904 0.81139 1.88401 1.21052 1.94818 1.28182 0.93867 0.90573 0.92932 0.88337 0.90532 0.91628 0.86556 0.86433 0.72719 0.88329 0.90707 0.88384 0.89294 0.91168 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 8.74 71.98 0.63 -4.20 16 2 C -0.06 -2.13 1.80 -10.80 -0.02 -2.15 16 3 H 0.06 2.34 7.96 -2.39 -0.02 2.32 16 4 C -0.11 -4.46 3.72 29.85 0.11 -4.34 16 5 C 0.45 22.88 7.16 87.66 0.63 23.50 16 6 O -0.61 -35.01 13.60 -3.05 -0.04 -35.05 16 7 N -0.45 -23.51 2.17 -639.59 -1.39 -24.90 16 8 C -0.34 -19.63 9.35 84.04 0.79 -18.85 16 9 H 0.08 4.83 7.37 -2.91 -0.02 4.81 16 10 C 0.00 -0.06 4.84 84.92 0.41 0.35 16 11 N -0.89 -47.31 9.32 21.66 0.20 -47.11 16 12 Si 0.99 42.81 29.61 68.60 2.03 44.84 16 13 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 14 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 16 C 0.14 6.28 4.97 85.63 0.43 6.71 16 17 C 0.50 22.03 5.91 71.24 0.42 22.45 16 18 O -0.55 -28.86 16.80 21.97 0.37 -28.49 16 19 O -0.52 -17.86 13.42 -51.46 -0.69 -18.55 16 20 C 0.09 2.29 2.96 31.26 0.09 2.38 16 21 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 22 C -0.15 -2.88 5.55 32.05 0.18 -2.70 16 23 C -0.15 -2.18 7.02 31.85 0.22 -1.95 16 24 C 0.04 0.76 7.79 72.45 0.56 1.33 16 25 O -0.40 -11.16 10.39 -148.98 -1.55 -12.71 16 26 H 0.04 1.87 5.95 -2.39 -0.01 1.86 16 27 H 0.08 2.08 7.28 -2.38 -0.02 2.06 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.10 3.51 6.89 -2.38 -0.02 3.49 16 30 H 0.08 2.94 7.55 -2.39 -0.02 2.92 16 31 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 32 H 0.12 4.15 6.67 -2.39 -0.02 4.13 16 33 H 0.12 5.38 6.37 -2.39 -0.02 5.37 16 34 H 0.41 10.61 9.10 -74.06 -0.67 9.94 16 35 H 0.10 1.59 8.05 -2.39 -0.02 1.57 16 36 H 0.07 1.55 8.06 -2.38 -0.02 1.53 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -74.67 324.86 3.77 -70.90 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.38 Total: 28.55 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: 4.45 Total: 22.53 kcal Atomic # 7 Polarization: -70.82 SS G_CDS: -1.19 Total: -72.01 kcal Atomic # 8 Polarization: -92.89 SS G_CDS: -1.91 Total: -94.80 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -74.67 3.77 -70.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592226335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.379 kcal (2) G-P(sol) polarization free energy of solvation -74.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds