Wall clock time and date at job start Tue Mar 31 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46975 * 2 1 4 4 C 1.52997 * 109.47176 * 239.99982 * 2 1 3 5 5 C 1.50701 * 109.47051 * 64.99933 * 4 2 1 6 6 O 1.21292 * 120.00040 * 6.57880 * 5 4 2 7 7 N 1.34777 * 120.00055 * 186.57746 * 5 4 2 8 8 C 1.37104 * 119.99840 * 355.18121 * 7 5 4 9 9 H 1.08002 * 119.99998 * 23.08470 * 8 7 5 10 10 C 1.38946 * 119.99906 * 203.08237 * 8 7 5 11 11 N 1.31413 * 120.00230 * 351.39512 * 10 8 7 12 12 Si 1.86809 * 119.99955 * 171.39202 * 10 8 7 13 13 H 1.48498 * 109.46614 * 89.99939 * 12 10 8 14 14 H 1.48492 * 109.46876 * 210.00051 * 12 10 8 15 15 H 1.48496 * 109.46691 * 330.00098 * 12 10 8 16 16 C 1.46494 * 120.00132 * 175.17820 * 7 5 4 17 17 C 1.50703 * 109.47250 * 90.00531 * 16 7 5 18 18 O 1.20824 * 119.99519 * 359.97438 * 17 16 7 19 19 O 1.34227 * 120.00561 * 180.02562 * 17 16 7 20 20 C 1.52996 * 109.46853 * 119.99915 * 2 1 3 21 21 H 1.08994 * 110.33668 * 60.70660 * 20 2 1 22 22 C 1.54483 * 110.37423 * 298.44963 * 20 2 1 23 23 C 1.54514 * 104.06373 * 217.19373 * 22 20 2 24 24 C 1.54481 * 104.06093 * 359.97438 * 23 22 20 25 25 O 1.44431 * 110.36946 * 182.95410 * 20 2 1 26 26 H 1.09000 * 109.46968 * 59.99965 * 1 2 3 27 27 H 1.08995 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47406 * 300.00097 * 1 2 3 29 29 H 1.08994 * 109.47163 * 304.99929 * 4 2 1 30 30 H 1.09001 * 109.47113 * 185.00141 * 4 2 1 31 31 H 0.97002 * 119.99899 * 185.01336 * 11 10 8 32 32 H 1.08997 * 109.47518 * 330.00385 * 16 7 5 33 33 H 1.09002 * 109.47368 * 209.99735 * 16 7 5 34 34 H 0.96699 * 117.00308 * 179.97438 * 19 17 16 35 35 H 1.08997 * 110.50913 * 335.83643 * 22 20 2 36 36 H 1.08994 * 110.50996 * 98.54845 * 22 20 2 37 37 H 1.08993 * 110.51199 * 118.64663 * 23 22 20 38 38 H 1.08995 * 110.50944 * 241.22039 * 23 22 20 39 39 H 1.09000 * 110.36744 * 142.81177 * 24 23 22 40 40 H 1.08997 * 110.37396 * 265.14821 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 8 1.1172 1.1448 -2.3612 7 7 1.8672 -0.4555 -3.7024 8 6 2.5478 -1.6381 -3.8362 9 1 2.5794 -2.3389 -3.0149 10 6 3.1968 -1.9352 -5.0283 11 7 3.0208 -1.1686 -6.0810 12 14 4.3198 -3.4243 -5.1345 13 1 3.5312 -4.6096 -5.5569 14 1 5.3934 -3.1648 -6.1269 15 1 4.9270 -3.6821 -3.8042 16 6 1.3855 0.2510 -4.8919 17 6 2.4466 1.2071 -5.3725 18 8 3.4972 1.2902 -4.7816 19 8 2.2242 1.9672 -6.4563 20 6 2.0400 -0.7212 1.2492 21 1 1.6947 -1.7550 1.2572 22 6 1.5688 0.0130 2.5241 23 6 2.7651 -0.1131 3.4939 24 6 3.8172 -0.9092 2.6904 25 8 3.4824 -0.6724 1.3043 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6055 -1.7197 -1.2951 30 1 3.1264 -0.7995 -1.2055 31 1 3.4150 -1.4156 -6.9322 32 1 0.4814 0.8067 -4.6433 33 1 1.1638 -0.4706 -5.6782 34 1 2.9343 2.5656 -6.7261 35 1 1.3620 1.0609 2.3070 36 1 0.6866 -0.4730 2.9407 37 1 3.1497 0.8724 3.7562 38 1 2.4736 -0.6594 4.3909 39 1 4.8195 -0.5395 2.9071 40 1 3.7459 -1.9722 2.9206 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592226338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:32 Heat of formation + Delta-G solvation = -172.916757 kcal Electronic energy + Delta-G solvation = -23809.561504 eV Core-core repulsion = 20203.532826 eV Total energy + Delta-G solvation = -3606.028678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.63463 -39.10717 -38.04579 -35.34115 -34.46972 -34.05837 -31.95647 -31.49560 -28.94262 -27.67358 -26.48395 -24.62114 -23.17561 -21.59715 -20.67218 -19.76512 -19.09886 -17.00515 -16.83122 -16.28191 -16.04582 -15.53720 -15.40079 -15.30103 -14.28729 -14.22116 -14.15296 -13.99528 -13.63626 -13.07524 -12.90856 -12.37043 -11.99765 -11.82580 -11.70630 -11.58291 -11.37688 -11.22341 -11.16681 -10.96239 -10.83380 -10.66104 -10.43509 -10.37659 -10.23208 -10.18921 -10.15081 -9.54394 -9.44191 -8.98312 -8.47523 -7.90812 -6.40423 -4.02481 3.11243 3.21557 3.25019 3.70875 3.84801 4.03275 4.08949 4.35458 4.62734 4.71496 4.89057 4.98547 5.09086 5.21148 5.33103 5.45203 5.54829 5.66022 5.77115 5.79117 5.86486 5.94603 6.03685 6.13781 6.20614 6.29201 6.36260 6.49483 6.70755 6.76954 6.79872 6.86758 6.96579 7.09685 7.36955 7.68473 7.75410 8.29859 9.02582 9.30903 9.42775 9.82151 10.61879 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017586 B = 0.005351 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.837535 B = 5231.353993 C = 6165.443813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.067 4.067 3 H 0.082 0.918 4 C -0.112 4.112 5 C 0.476 3.524 6 O -0.600 6.600 7 N -0.437 5.437 8 C -0.322 4.322 9 H 0.103 0.897 10 C 0.039 3.961 11 N -0.889 5.889 12 Si 0.932 3.068 13 H -0.278 1.278 14 H -0.283 1.283 15 H -0.268 1.268 16 C 0.157 3.843 17 C 0.504 3.496 18 O -0.523 6.523 19 O -0.535 6.535 20 C 0.079 3.921 21 H 0.066 0.934 22 C -0.149 4.149 23 C -0.156 4.156 24 C 0.043 3.957 25 O -0.365 6.365 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.272 0.728 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.387 0.613 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 -1.172 10.931 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 H 0.101 0.899 4 C -0.152 4.152 5 C 0.266 3.734 6 O -0.486 6.486 7 N -0.157 5.157 8 C -0.450 4.450 9 H 0.121 0.879 10 C -0.163 4.163 11 N -0.530 5.530 12 Si 0.759 3.241 13 H -0.204 1.204 14 H -0.208 1.208 15 H -0.193 1.193 16 C 0.032 3.968 17 C 0.345 3.655 18 O -0.409 6.409 19 O -0.346 6.346 20 C 0.021 3.979 21 H 0.084 0.916 22 C -0.186 4.186 23 C -0.194 4.194 24 C -0.034 4.034 25 O -0.284 6.284 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.243 0.757 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.915 -0.846 10.905 11.319 hybrid contribution 1.211 -0.521 -0.295 1.351 sum -1.703 -1.367 10.609 10.832 Atomic orbital electron populations 1.21857 0.94356 1.01201 1.02814 1.20925 0.95847 1.00221 0.91642 0.89915 1.21379 1.03043 0.98927 0.91804 1.20286 0.82086 0.86178 0.84891 1.90501 1.49254 1.22027 1.86849 1.43386 1.49406 1.20042 1.02831 1.19682 1.27883 0.95407 1.01996 0.87927 1.25277 0.96534 0.99076 0.95408 1.69592 1.44784 1.37761 1.00878 0.85831 0.79804 0.79921 0.78534 1.20387 1.20827 1.19276 1.20591 0.91483 0.93986 0.90766 1.23743 0.89227 0.76639 0.75851 1.90546 1.27639 1.65561 1.57197 1.84535 1.49205 1.53272 1.47557 1.23130 0.81018 0.98558 0.95146 0.91578 1.22990 0.98053 1.02244 0.95345 1.22941 0.96314 1.01306 0.98802 1.23374 0.98970 0.98745 0.82360 1.89250 1.21192 1.92967 1.24957 0.90143 0.93489 0.93418 0.90410 0.88945 0.91695 0.90931 0.84606 0.75741 0.90398 0.90778 0.90914 0.90963 0.89464 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.73 37.16 0.32 -1.94 16 2 C -0.07 -1.17 1.70 -90.62 -0.15 -1.32 16 3 H 0.08 1.62 7.86 -51.93 -0.41 1.21 16 4 C -0.11 -2.27 3.71 -27.88 -0.10 -2.37 16 5 C 0.48 11.57 7.22 -10.98 -0.08 11.49 16 6 O -0.60 -15.50 13.86 5.55 0.08 -15.43 16 7 N -0.44 -11.14 2.11 -116.10 -0.25 -11.39 16 8 C -0.32 -8.20 9.14 -14.93 -0.14 -8.33 16 9 H 0.10 2.43 6.46 -52.49 -0.34 2.09 16 10 C 0.04 1.00 5.41 -17.47 -0.09 0.91 16 11 N -0.89 -23.19 8.20 55.50 0.46 -22.74 16 12 Si 0.93 20.09 29.57 -169.99 -5.03 15.06 16 13 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 C 0.16 3.87 5.21 -5.20 -0.03 3.84 16 17 C 0.50 12.75 6.28 36.01 0.23 12.98 16 18 O -0.52 -15.01 16.94 -18.75 -0.32 -15.33 16 19 O -0.54 -11.25 13.42 -39.25 -0.53 -11.78 16 20 C 0.08 1.15 2.80 -25.96 -0.07 1.08 16 21 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 22 C -0.15 -1.73 5.57 -25.16 -0.14 -1.87 16 23 C -0.16 -1.58 7.09 -25.16 -0.18 -1.76 16 24 C 0.04 0.50 7.63 37.93 0.29 0.79 16 25 O -0.36 -5.93 10.78 -35.23 -0.38 -6.31 16 26 H 0.08 1.48 6.19 -51.93 -0.32 1.16 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.63 7.21 -51.93 -0.37 0.26 16 29 H 0.08 1.46 7.49 -51.93 -0.39 1.07 16 30 H 0.09 2.01 7.67 -51.93 -0.40 1.61 16 31 H 0.27 6.83 8.32 -40.82 -0.34 6.49 16 32 H 0.07 1.68 7.49 -51.93 -0.39 1.29 16 33 H 0.14 3.35 6.29 -51.93 -0.33 3.03 16 34 H 0.39 6.41 9.10 45.56 0.41 6.83 16 35 H 0.08 0.94 7.73 -51.93 -0.40 0.54 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 325.52 15.07 4.91 4.91 Total: -1.00 -32.11 325.52 -6.23 -38.34 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.03 Total: 11.17 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: -0.15 Total: 13.48 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.21 Total: -34.12 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -1.15 Total: -48.84 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.11 -6.23 -38.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592226338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.575 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds