Wall clock time and date at job start Tue Mar 31 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46975 * 2 1 4 4 C 1.52997 * 109.47176 * 239.99982 * 2 1 3 5 5 C 1.50701 * 109.47051 * 64.99933 * 4 2 1 6 6 O 1.21292 * 120.00040 * 6.57880 * 5 4 2 7 7 N 1.34777 * 120.00055 * 186.57746 * 5 4 2 8 8 C 1.37104 * 119.99840 * 355.18121 * 7 5 4 9 9 H 1.08002 * 119.99998 * 23.08470 * 8 7 5 10 10 C 1.38946 * 119.99906 * 203.08237 * 8 7 5 11 11 N 1.31413 * 120.00230 * 351.39512 * 10 8 7 12 12 Si 1.86809 * 119.99955 * 171.39202 * 10 8 7 13 13 H 1.48498 * 109.46614 * 89.99939 * 12 10 8 14 14 H 1.48492 * 109.46876 * 210.00051 * 12 10 8 15 15 H 1.48496 * 109.46691 * 330.00098 * 12 10 8 16 16 C 1.46494 * 120.00132 * 175.17820 * 7 5 4 17 17 C 1.50703 * 109.47250 * 90.00531 * 16 7 5 18 18 O 1.20824 * 119.99519 * 359.97438 * 17 16 7 19 19 O 1.34227 * 120.00561 * 180.02562 * 17 16 7 20 20 C 1.52996 * 109.46853 * 119.99915 * 2 1 3 21 21 H 1.08994 * 110.33668 * 60.70660 * 20 2 1 22 22 C 1.54483 * 110.37423 * 298.44963 * 20 2 1 23 23 C 1.54514 * 104.06373 * 217.19373 * 22 20 2 24 24 C 1.54481 * 104.06093 * 359.97438 * 23 22 20 25 25 O 1.44431 * 110.36946 * 182.95410 * 20 2 1 26 26 H 1.09000 * 109.46968 * 59.99965 * 1 2 3 27 27 H 1.08995 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47406 * 300.00097 * 1 2 3 29 29 H 1.08994 * 109.47163 * 304.99929 * 4 2 1 30 30 H 1.09001 * 109.47113 * 185.00141 * 4 2 1 31 31 H 0.97002 * 119.99899 * 185.01336 * 11 10 8 32 32 H 1.08997 * 109.47518 * 330.00385 * 16 7 5 33 33 H 1.09002 * 109.47368 * 209.99735 * 16 7 5 34 34 H 0.96699 * 117.00308 * 179.97438 * 19 17 16 35 35 H 1.08997 * 110.50913 * 335.83643 * 22 20 2 36 36 H 1.08994 * 110.50996 * 98.54845 * 22 20 2 37 37 H 1.08993 * 110.51199 * 118.64663 * 23 22 20 38 38 H 1.08995 * 110.50944 * 241.22039 * 23 22 20 39 39 H 1.09000 * 110.36744 * 142.81177 * 24 23 22 40 40 H 1.08997 * 110.37396 * 265.14821 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 8 1.1172 1.1448 -2.3612 7 7 1.8672 -0.4555 -3.7024 8 6 2.5478 -1.6381 -3.8362 9 1 2.5794 -2.3389 -3.0149 10 6 3.1968 -1.9352 -5.0283 11 7 3.0208 -1.1686 -6.0810 12 14 4.3198 -3.4243 -5.1345 13 1 3.5312 -4.6096 -5.5569 14 1 5.3934 -3.1648 -6.1269 15 1 4.9270 -3.6821 -3.8042 16 6 1.3855 0.2510 -4.8919 17 6 2.4466 1.2071 -5.3725 18 8 3.4972 1.2902 -4.7816 19 8 2.2242 1.9672 -6.4563 20 6 2.0400 -0.7212 1.2492 21 1 1.6947 -1.7550 1.2572 22 6 1.5688 0.0130 2.5241 23 6 2.7651 -0.1131 3.4939 24 6 3.8172 -0.9092 2.6904 25 8 3.4824 -0.6724 1.3043 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6055 -1.7197 -1.2951 30 1 3.1264 -0.7995 -1.2055 31 1 3.4150 -1.4156 -6.9322 32 1 0.4814 0.8067 -4.6433 33 1 1.1638 -0.4706 -5.6782 34 1 2.9343 2.5656 -6.7261 35 1 1.3620 1.0609 2.3070 36 1 0.6866 -0.4730 2.9407 37 1 3.1497 0.8724 3.7562 38 1 2.4736 -0.6594 4.3909 39 1 4.8195 -0.5395 2.9071 40 1 3.7459 -1.9722 2.9206 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592226338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:31 Heat of formation + Delta-G solvation = -194.227715 kcal Electronic energy + Delta-G solvation = -23810.485616 eV Core-core repulsion = 20203.532826 eV Total energy + Delta-G solvation = -3606.952791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.29588 -40.57234 -39.82182 -37.15994 -36.41260 -35.57295 -33.45245 -32.92433 -30.61042 -28.93323 -28.05829 -26.51805 -24.36262 -22.90973 -22.13390 -21.17675 -20.87999 -18.89561 -18.65093 -18.05370 -17.39426 -17.18435 -16.67008 -16.52939 -16.15403 -16.07976 -15.87001 -15.65562 -14.67181 -14.55633 -14.28846 -13.92709 -13.73475 -13.45832 -13.15660 -12.98670 -12.82434 -12.74239 -12.51759 -12.49754 -12.17651 -12.16456 -12.14025 -12.00268 -11.68216 -11.59394 -11.41350 -11.34834 -10.94257 -10.62668 -10.37466 -9.87347 -8.32895 -6.00168 1.40227 1.46305 1.56777 1.77461 1.93733 2.25877 2.55076 2.96173 3.03149 3.18787 3.72730 3.79527 4.06363 4.09948 4.18142 4.26543 4.41323 4.46015 4.55009 4.65931 4.73407 4.79115 4.85522 4.90109 4.90583 4.98159 5.00518 5.04901 5.12481 5.21615 5.27559 5.42676 5.44516 5.49444 5.79149 5.93356 6.05502 6.35403 7.07700 7.40879 7.50531 7.89587 8.69182 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017586 B = 0.005351 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.837535 B = 5231.353993 C = 6165.443813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 H 0.051 0.949 4 C -0.103 4.103 5 C 0.464 3.536 6 O -0.622 6.622 7 N -0.450 5.450 8 C -0.340 4.340 9 H 0.115 0.885 10 C -0.005 4.005 11 N -0.910 5.910 12 Si 0.996 3.004 13 H -0.261 1.261 14 H -0.292 1.292 15 H -0.265 1.265 16 C 0.154 3.846 17 C 0.506 3.494 18 O -0.564 6.564 19 O -0.522 6.522 20 C 0.079 3.921 21 H 0.081 0.919 22 C -0.146 4.146 23 C -0.149 4.149 24 C 0.033 3.967 25 O -0.405 6.405 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.271 0.729 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.409 0.591 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 -2.553 12.543 13.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.082 4.082 3 H 0.069 0.931 4 C -0.142 4.142 5 C 0.255 3.745 6 O -0.510 6.510 7 N -0.169 5.169 8 C -0.467 4.467 9 H 0.132 0.868 10 C -0.205 4.205 11 N -0.551 5.551 12 Si 0.820 3.180 13 H -0.186 1.186 14 H -0.218 1.218 15 H -0.189 1.189 16 C 0.029 3.971 17 C 0.350 3.650 18 O -0.454 6.454 19 O -0.333 6.333 20 C 0.022 3.978 21 H 0.099 0.901 22 C -0.184 4.184 23 C -0.186 4.186 24 C -0.043 4.043 25 O -0.325 6.325 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.151 0.849 34 H 0.268 0.732 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.221 -2.215 12.506 13.103 hybrid contribution 1.298 0.000 -0.866 1.560 sum -1.923 -2.215 11.640 12.004 Atomic orbital electron populations 1.21760 0.92909 1.02305 1.02462 1.20875 0.97039 0.98425 0.91858 0.93072 1.21356 1.01909 0.99586 0.91373 1.21024 0.81481 0.86303 0.85703 1.90472 1.50133 1.23067 1.87277 1.43635 1.49556 1.20386 1.03333 1.20057 1.28279 0.95690 1.02634 0.86751 1.26130 0.97418 1.01865 0.95049 1.69682 1.45309 1.39006 1.01110 0.84865 0.77651 0.77309 0.78189 1.18583 1.21793 1.18910 1.20628 0.91710 0.93971 0.90823 1.23841 0.88595 0.76517 0.76044 1.90522 1.29177 1.67041 1.58681 1.84461 1.50019 1.53067 1.45791 1.23135 0.80668 0.99215 0.94775 0.90147 1.22992 0.99601 1.01534 0.94230 1.22935 0.94983 1.01612 0.99116 1.23637 0.99961 1.00102 0.80606 1.89212 1.22112 1.93341 1.27787 0.93393 0.91582 0.90815 0.88741 0.90765 0.91847 0.90188 0.84868 0.73228 0.91335 0.88236 0.90751 0.88186 0.88812 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 8.73 71.98 0.63 -3.51 16 2 C -0.06 -2.17 1.70 -10.79 -0.02 -2.19 16 3 H 0.05 2.06 7.86 -2.38 -0.02 2.05 16 4 C -0.10 -4.21 3.71 29.85 0.11 -4.09 16 5 C 0.46 23.06 7.22 87.66 0.63 23.69 16 6 O -0.62 -33.08 13.86 -3.07 -0.04 -33.12 16 7 N -0.45 -23.30 2.11 -639.60 -1.35 -24.65 16 8 C -0.34 -17.32 9.14 84.04 0.77 -16.56 16 9 H 0.11 5.38 6.46 -2.91 -0.02 5.36 16 10 C -0.01 -0.26 5.41 84.93 0.46 0.20 16 11 N -0.91 -47.63 8.20 21.66 0.18 -47.46 16 12 Si 1.00 40.75 29.57 68.60 2.03 42.77 16 13 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 14 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 15 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 16 C 0.15 7.71 5.21 85.63 0.45 8.16 16 17 C 0.51 25.93 6.28 71.24 0.45 26.38 16 18 O -0.56 -33.00 16.94 21.97 0.37 -32.63 16 19 O -0.52 -21.69 13.42 -51.38 -0.69 -22.38 16 20 C 0.08 2.18 2.80 31.10 0.09 2.27 16 21 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 22 C -0.15 -3.01 5.57 31.61 0.18 -2.83 16 23 C -0.15 -2.59 7.09 31.61 0.22 -2.36 16 24 C 0.03 0.72 7.63 72.49 0.55 1.27 16 25 O -0.40 -12.86 10.78 -148.98 -1.61 -14.47 16 26 H 0.05 1.76 6.19 -2.39 -0.01 1.75 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.81 7.21 -2.39 -0.02 1.79 16 29 H 0.09 3.49 7.49 -2.39 -0.02 3.47 16 30 H 0.07 3.31 7.67 -2.39 -0.02 3.29 16 31 H 0.27 13.64 8.32 -92.71 -0.77 12.87 16 32 H 0.08 3.79 7.49 -2.39 -0.02 3.78 16 33 H 0.13 6.69 6.29 -2.39 -0.02 6.68 16 34 H 0.41 13.16 9.10 -74.06 -0.67 12.49 16 35 H 0.07 1.54 7.73 -2.39 -0.02 1.52 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -70.21 325.52 3.79 -66.42 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.38 Total: 35.07 kcal Atomic # 6 Polarization: 25.92 SS G_CDS: 4.52 Total: 30.43 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -1.17 Total: -72.10 kcal Atomic # 8 Polarization: -100.63 SS G_CDS: -1.97 Total: -102.59 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Total: -70.21 3.79 -66.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592226338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.807 kcal (2) G-P(sol) polarization free energy of solvation -70.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds