Wall clock time and date at job start Tue Mar 31 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46860 * 2 1 4 4 C 1.53000 * 109.47086 * 119.99939 * 2 1 3 5 5 C 1.50700 * 109.47034 * 294.99926 * 4 2 1 6 6 O 1.20822 * 120.00106 * 0.02562 * 5 4 2 7 7 O 1.34237 * 119.99850 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47036 * 239.99944 * 2 1 3 9 9 C 1.50700 * 109.46904 * 65.00265 * 8 2 1 10 10 O 1.21277 * 120.00203 * 359.97438 * 9 8 2 11 11 N 1.34778 * 119.99589 * 179.97438 * 9 8 2 12 12 C 1.47022 * 125.65322 * 0.02783 * 11 9 8 13 13 C 1.54322 * 107.27482 * 178.89199 * 12 11 9 14 14 C 1.55157 * 102.93912 * 337.80443 * 13 12 11 15 15 O 1.42900 * 111.00520 * 277.38901 * 14 13 12 16 16 C 1.50702 * 111.00344 * 153.57728 * 14 13 12 17 17 H 1.08002 * 120.00299 * 241.45696 * 16 14 13 18 18 C 1.37884 * 119.99942 * 61.17254 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.47424 * 125.64766 * 179.97438 * 11 9 8 25 25 H 1.08999 * 109.47164 * 299.99950 * 1 2 3 26 26 H 1.09003 * 109.47023 * 60.00023 * 1 2 3 27 27 H 1.08997 * 109.46860 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47425 * 55.00085 * 4 2 1 29 29 H 1.08996 * 109.47018 * 175.00291 * 4 2 1 30 30 H 0.96700 * 116.99585 * 180.02562 * 7 5 4 31 31 H 1.08994 * 109.47163 * 304.99682 * 8 2 1 32 32 H 1.09002 * 109.46770 * 184.99626 * 8 2 1 33 33 H 1.09003 * 109.88076 * 59.47030 * 12 11 9 34 34 H 1.09001 * 110.00358 * 298.38406 * 12 11 9 35 35 H 1.08995 * 110.71729 * 219.44160 * 13 12 11 36 36 H 1.08996 * 110.71909 * 96.16437 * 13 12 11 37 37 H 0.96704 * 113.99783 * 295.41666 * 15 14 13 38 38 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 39 39 H 1.09007 * 110.36818 * 85.33903 * 24 11 9 40 40 H 1.09006 * 110.37032 * 323.01581 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 8 1.0134 1.0831 2.3637 7 8 1.9831 -0.3901 3.6953 8 6 2.0400 -0.7213 -1.2492 9 6 1.6414 0.0571 -2.4765 10 8 1.0110 1.0870 -2.3632 11 7 1.9854 -0.3914 -3.7001 12 6 2.7446 -1.6188 -3.9807 13 6 2.8739 -1.7371 -5.5139 14 6 1.6950 -0.8704 -6.0300 15 8 0.4731 -1.6113 -6.0230 16 6 1.9858 -0.3266 -7.4051 17 1 2.0361 0.7404 -7.5644 18 6 2.1934 -1.1915 -8.4587 19 7 2.1321 -2.4908 -8.2647 20 14 2.5614 -0.5176 -10.1615 21 1 3.8035 0.2951 -10.1145 22 1 2.7425 -1.6447 -11.1114 23 1 1.4304 0.3325 -10.6127 24 6 1.6618 0.2670 -4.9788 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6055 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2056 30 1 1.7047 0.1431 4.4524 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7994 -1.2056 33 1 2.2108 -2.4832 -3.5858 34 1 3.7345 -1.5564 -3.5288 35 1 2.7588 -2.7733 -5.8318 36 1 3.8275 -1.3322 -5.8528 37 1 0.4660 -2.3639 -6.6303 38 1 2.2778 -3.0993 -9.0061 39 1 2.4093 1.0243 -5.2154 40 1 0.6685 0.7139 -4.9348 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592374691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:14 Heat of formation + Delta-G solvation = -190.125942 kcal Electronic energy + Delta-G solvation = -23018.653303 eV Core-core repulsion = 19411.878379 eV Total energy + Delta-G solvation = -3606.774924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.58305 -39.55787 -37.54182 -36.50976 -35.14007 -34.28410 -32.24468 -30.19249 -29.08544 -28.28376 -27.36147 -24.98358 -22.90347 -22.07092 -20.23114 -19.62504 -18.76379 -18.14244 -17.25570 -16.99188 -16.32645 -16.22329 -15.53240 -14.98628 -14.82936 -14.59788 -14.18609 -13.56477 -13.48085 -13.36176 -12.71974 -12.50125 -12.43181 -12.07483 -11.91179 -11.75489 -11.66894 -11.39380 -11.30631 -11.17534 -10.97684 -10.89559 -10.77502 -10.62116 -10.52508 -10.46419 -10.04916 -9.42069 -9.24540 -8.70698 -8.24879 -7.97286 -6.31081 -4.39395 2.02753 2.80181 3.09728 3.20168 3.25085 3.28506 3.60081 4.24751 4.52578 4.75892 4.84771 4.94230 5.04234 5.25402 5.31412 5.40883 5.51657 5.56924 5.70865 5.73105 5.82906 5.88655 6.00643 6.11754 6.27273 6.32188 6.39696 6.43112 6.61741 6.67400 6.88296 6.96898 7.28660 7.32746 7.70170 7.70731 7.98954 8.15873 8.62518 8.68234 9.28123 9.37232 10.76020 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.048840 B = 0.003145 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.168172 B = 8900.063667 C = 9073.148858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.064 4.064 3 H 0.088 0.912 4 C -0.111 4.111 5 C 0.477 3.523 6 O -0.506 6.506 7 O -0.522 6.522 8 C -0.132 4.132 9 C 0.522 3.478 10 O -0.550 6.550 11 N -0.608 5.608 12 C 0.099 3.901 13 C -0.136 4.136 14 C 0.247 3.753 15 O -0.583 6.583 16 C -0.536 4.536 17 H 0.064 0.936 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.903 3.097 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.120 3.880 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.408 0.592 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.381 0.619 38 H 0.268 0.732 39 H 0.071 0.929 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.329 -2.183 16.590 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.083 4.083 3 H 0.106 0.894 4 C -0.148 4.148 5 C 0.319 3.681 6 O -0.393 6.393 7 O -0.334 6.334 8 C -0.172 4.172 9 C 0.311 3.689 10 O -0.429 6.429 11 N -0.340 5.340 12 C -0.024 4.024 13 C -0.175 4.175 14 C 0.207 3.793 15 O -0.391 6.391 16 C -0.575 4.575 17 H 0.082 0.918 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.002 4.002 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.266 0.734 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.230 0.770 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.785 -1.294 16.699 16.979 hybrid contribution 0.375 0.012 -0.889 0.965 sum 3.160 -1.283 15.810 16.173 Atomic orbital electron populations 1.22086 0.93929 1.01289 1.04438 1.20716 0.97663 0.99986 0.89926 0.89359 1.21510 1.03883 1.00209 0.89243 1.23573 0.75857 0.84057 0.84613 1.90734 1.36990 1.24691 1.86906 1.84549 1.75044 1.56599 1.17257 1.21672 1.02542 1.00343 0.92661 1.20063 0.79686 0.85629 0.83528 1.90646 1.40960 1.25189 1.86092 1.48646 1.54227 1.25231 1.05945 1.22180 0.94085 0.86378 0.99789 1.23165 1.01365 1.03329 0.89608 1.19608 0.81436 0.86669 0.91590 1.86139 1.38525 1.47282 1.67193 1.21419 1.49360 0.93792 0.92912 0.91778 1.24990 0.93726 0.94827 0.99454 1.69709 1.49486 1.01599 1.32662 0.86474 0.79055 0.78535 0.82910 1.20049 1.21123 1.19988 1.22355 1.00513 0.96001 0.81298 0.91635 0.90072 0.93714 0.87488 0.87568 0.73362 0.88867 0.89090 0.92428 0.92892 0.89516 0.91409 0.76952 0.92164 0.91133 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 8.68 37.16 0.32 -1.91 16 2 C -0.06 -0.78 1.68 -90.62 -0.15 -0.94 16 3 H 0.09 1.27 7.77 -51.93 -0.40 0.87 16 4 C -0.11 -0.96 5.29 -27.88 -0.15 -1.10 16 5 C 0.48 4.81 8.05 36.01 0.29 5.10 16 6 O -0.51 -6.93 14.72 -18.75 -0.28 -7.21 16 7 O -0.52 -3.89 13.42 -39.28 -0.53 -4.42 16 8 C -0.13 -1.65 4.37 -27.88 -0.12 -1.77 16 9 C 0.52 9.40 7.57 -10.98 -0.08 9.32 16 10 O -0.55 -11.68 14.22 5.56 0.08 -11.61 16 11 N -0.61 -11.65 3.33 -170.51 -0.57 -12.22 16 12 C 0.10 1.69 6.49 -3.06 -0.02 1.67 16 13 C -0.14 -2.82 5.38 -24.90 -0.13 -2.96 16 14 C 0.25 5.85 0.88 -89.62 -0.08 5.77 16 15 O -0.58 -14.57 13.18 -35.23 -0.46 -15.03 16 16 C -0.54 -13.76 8.27 -34.44 -0.28 -14.04 16 17 H 0.06 1.65 7.79 -52.49 -0.41 1.24 16 18 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 19 N -0.90 -22.55 10.73 55.43 0.59 -21.95 16 20 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 22 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.12 2.65 6.08 -2.53 -0.02 2.64 16 25 H 0.06 0.94 5.96 -51.93 -0.31 0.63 16 26 H 0.08 1.39 5.95 -51.93 -0.31 1.08 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.41 1.44 9.10 45.56 0.41 1.86 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.88 7.54 -51.93 -0.39 1.49 16 36 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 37 H 0.38 9.48 7.51 45.56 0.34 9.82 16 38 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 39 H 0.07 1.52 8.03 -51.92 -0.42 1.10 16 40 H 0.07 1.66 8.04 -51.93 -0.42 1.24 16 LS Contribution 329.48 15.07 4.97 4.97 Total: -1.00 -30.96 329.48 -6.15 -37.11 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -4.41 Total: 11.96 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.52 Total: 3.52 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.03 Total: -34.17 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -1.19 Total: -38.27 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.96 -6.15 -37.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592374691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.020 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds