Wall clock time and date at job start Tue Mar 31 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46860 * 2 1 4 4 C 1.53000 * 109.47086 * 119.99939 * 2 1 3 5 5 C 1.50700 * 109.47034 * 294.99926 * 4 2 1 6 6 O 1.20822 * 120.00106 * 0.02562 * 5 4 2 7 7 O 1.34237 * 119.99850 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47036 * 239.99944 * 2 1 3 9 9 C 1.50700 * 109.46904 * 65.00265 * 8 2 1 10 10 O 1.21277 * 120.00203 * 359.97438 * 9 8 2 11 11 N 1.34778 * 119.99589 * 179.97438 * 9 8 2 12 12 C 1.47022 * 125.65322 * 0.02783 * 11 9 8 13 13 C 1.54322 * 107.27482 * 178.89199 * 12 11 9 14 14 C 1.55157 * 102.93912 * 337.80443 * 13 12 11 15 15 O 1.42900 * 111.00520 * 277.38901 * 14 13 12 16 16 C 1.50702 * 111.00344 * 153.57728 * 14 13 12 17 17 H 1.08002 * 120.00299 * 241.45696 * 16 14 13 18 18 C 1.37884 * 119.99942 * 61.17254 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.47424 * 125.64766 * 179.97438 * 11 9 8 25 25 H 1.08999 * 109.47164 * 299.99950 * 1 2 3 26 26 H 1.09003 * 109.47023 * 60.00023 * 1 2 3 27 27 H 1.08997 * 109.46860 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47425 * 55.00085 * 4 2 1 29 29 H 1.08996 * 109.47018 * 175.00291 * 4 2 1 30 30 H 0.96700 * 116.99585 * 180.02562 * 7 5 4 31 31 H 1.08994 * 109.47163 * 304.99682 * 8 2 1 32 32 H 1.09002 * 109.46770 * 184.99626 * 8 2 1 33 33 H 1.09003 * 109.88076 * 59.47030 * 12 11 9 34 34 H 1.09001 * 110.00358 * 298.38406 * 12 11 9 35 35 H 1.08995 * 110.71729 * 219.44160 * 13 12 11 36 36 H 1.08996 * 110.71909 * 96.16437 * 13 12 11 37 37 H 0.96704 * 113.99783 * 295.41666 * 15 14 13 38 38 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 39 39 H 1.09007 * 110.36818 * 85.33903 * 24 11 9 40 40 H 1.09006 * 110.37032 * 323.01581 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 8 1.0134 1.0831 2.3637 7 8 1.9831 -0.3901 3.6953 8 6 2.0400 -0.7213 -1.2492 9 6 1.6414 0.0571 -2.4765 10 8 1.0110 1.0870 -2.3632 11 7 1.9854 -0.3914 -3.7001 12 6 2.7446 -1.6188 -3.9807 13 6 2.8739 -1.7371 -5.5139 14 6 1.6950 -0.8704 -6.0300 15 8 0.4731 -1.6113 -6.0230 16 6 1.9858 -0.3266 -7.4051 17 1 2.0361 0.7404 -7.5644 18 6 2.1934 -1.1915 -8.4587 19 7 2.1321 -2.4908 -8.2647 20 14 2.5614 -0.5176 -10.1615 21 1 3.8035 0.2951 -10.1145 22 1 2.7425 -1.6447 -11.1114 23 1 1.4304 0.3325 -10.6127 24 6 1.6618 0.2670 -4.9788 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6055 -1.7198 1.2952 29 1 3.1263 -0.7994 1.2056 30 1 1.7047 0.1431 4.4524 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7994 -1.2056 33 1 2.2108 -2.4832 -3.5858 34 1 3.7345 -1.5564 -3.5288 35 1 2.7588 -2.7733 -5.8318 36 1 3.8275 -1.3322 -5.8528 37 1 0.4660 -2.3639 -6.6303 38 1 2.2778 -3.0993 -9.0061 39 1 2.4093 1.0243 -5.2154 40 1 0.6685 0.7139 -4.9348 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592374691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:12 Heat of formation + Delta-G solvation = -213.704139 kcal Electronic energy + Delta-G solvation = -23019.675731 eV Core-core repulsion = 19411.878379 eV Total energy + Delta-G solvation = -3607.797352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.44103 -40.92229 -39.10477 -37.30320 -36.21413 -35.95629 -34.20364 -31.74619 -30.32379 -29.60909 -28.59510 -26.73200 -24.13512 -23.23985 -21.63218 -20.92706 -20.05912 -19.09785 -18.91331 -18.22319 -17.42205 -16.98198 -16.94694 -16.80562 -16.33264 -15.92733 -15.64869 -15.01152 -14.87810 -14.24990 -14.18267 -13.84697 -13.70512 -13.46754 -13.23278 -13.18147 -12.97698 -12.87062 -12.62386 -12.55894 -12.43907 -12.27459 -12.12666 -12.00832 -11.82908 -11.68231 -11.35564 -11.23813 -10.74874 -10.59544 -10.12973 -9.49431 -8.23290 -6.38201 1.30540 1.43380 1.45603 1.52196 1.72874 2.02011 2.33789 2.42727 3.01679 3.53626 3.79878 3.91681 3.97003 4.00567 4.10274 4.39338 4.41428 4.52975 4.58456 4.63725 4.67761 4.71484 4.73356 4.79262 4.92707 4.95904 5.14319 5.22224 5.31406 5.39368 5.48312 5.49135 5.58659 5.74636 5.79248 6.09876 6.64196 6.73682 7.07961 7.26644 7.32324 7.41487 8.81945 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.048840 B = 0.003145 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.168172 B = 8900.063667 C = 9073.148858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.061 4.061 3 H 0.058 0.942 4 C -0.104 4.104 5 C 0.479 3.521 6 O -0.553 6.553 7 O -0.514 6.514 8 C -0.120 4.120 9 C 0.512 3.488 10 O -0.592 6.592 11 N -0.613 5.613 12 C 0.105 3.895 13 C -0.127 4.127 14 C 0.233 3.767 15 O -0.593 6.593 16 C -0.565 4.565 17 H 0.051 0.949 18 C 0.039 3.961 19 N -0.904 5.904 20 Si 0.957 3.043 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.281 1.281 24 C 0.125 3.875 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.425 0.575 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.378 0.622 38 H 0.271 0.729 39 H 0.068 0.932 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.163 -4.212 18.071 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.080 4.080 3 H 0.077 0.923 4 C -0.140 4.140 5 C 0.324 3.676 6 O -0.444 6.444 7 O -0.327 6.327 8 C -0.159 4.159 9 C 0.303 3.697 10 O -0.474 6.474 11 N -0.346 5.346 12 C -0.016 4.016 13 C -0.166 4.166 14 C 0.193 3.807 15 O -0.402 6.402 16 C -0.603 4.603 17 H 0.069 0.931 18 C -0.163 4.163 19 N -0.543 5.543 20 Si 0.783 3.217 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.206 1.206 24 C 0.001 3.999 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.286 0.714 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.227 0.773 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.642 -3.355 18.221 19.100 hybrid contribution -0.250 0.677 -1.323 1.507 sum 4.392 -2.678 16.898 17.663 Atomic orbital electron populations 1.22016 0.95762 1.01761 1.01907 1.20603 0.96126 0.99185 0.92081 0.92302 1.21494 1.05874 1.00337 0.86344 1.23888 0.74729 0.83304 0.85675 1.90737 1.39275 1.26835 1.87584 1.84505 1.74453 1.56578 1.17183 1.21733 1.04969 1.00139 0.89036 1.21211 0.78529 0.85483 0.84439 1.90640 1.42688 1.27405 1.86668 1.48754 1.54786 1.25743 1.05283 1.22243 0.96251 0.86023 0.97111 1.22940 0.99429 1.01712 0.92495 1.19780 0.81981 0.87591 0.91350 1.86127 1.39740 1.47286 1.67029 1.21650 1.50522 0.93467 0.94684 0.93078 1.25567 0.93464 0.95170 1.02098 1.69765 1.49084 1.01992 1.33412 0.85630 0.78594 0.78038 0.79436 1.19646 1.20281 1.20634 1.22070 0.98831 0.95766 0.83197 0.92605 0.94093 0.91664 0.84611 0.84304 0.71409 0.86178 0.85284 0.90384 0.88746 0.90582 0.92111 0.77308 0.91917 0.91406 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 8.68 71.98 0.62 -3.69 16 2 C -0.06 -1.36 1.68 -10.79 -0.02 -1.38 16 3 H 0.06 1.68 7.77 -2.39 -0.02 1.66 16 4 C -0.10 -1.36 5.29 29.85 0.16 -1.20 16 5 C 0.48 8.54 8.05 71.24 0.57 9.12 16 6 O -0.55 -14.92 14.72 21.98 0.32 -14.60 16 7 O -0.51 -6.09 13.42 -51.48 -0.69 -6.78 16 8 C -0.12 -2.53 4.37 29.85 0.13 -2.40 16 9 C 0.51 17.89 7.57 87.66 0.66 18.55 16 10 O -0.59 -25.93 14.22 -3.02 -0.04 -25.97 16 11 N -0.61 -22.80 3.33 -811.77 -2.70 -25.50 16 12 C 0.11 3.28 6.49 86.73 0.56 3.85 16 13 C -0.13 -5.14 5.38 31.78 0.17 -4.97 16 14 C 0.23 11.16 0.88 -10.15 -0.01 11.15 16 15 O -0.59 -30.15 13.18 -148.98 -1.96 -32.11 16 16 C -0.56 -29.55 8.27 25.60 0.21 -29.34 16 17 H 0.05 2.72 7.79 -2.91 -0.02 2.69 16 18 C 0.04 1.96 5.27 84.66 0.45 2.40 16 19 N -0.90 -45.25 10.73 21.45 0.23 -45.02 16 20 Si 0.96 40.79 29.54 68.60 2.03 42.81 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 22 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 24 C 0.12 5.65 6.08 86.86 0.53 6.18 16 25 H 0.05 1.62 5.96 -2.39 -0.01 1.61 16 26 H 0.04 1.44 5.95 -2.39 -0.01 1.43 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.42 1.97 9.10 -74.06 -0.67 1.30 16 31 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.08 3.22 7.54 -2.39 -0.02 3.21 16 36 H 0.06 2.50 8.03 -2.39 -0.02 2.48 16 37 H 0.38 19.11 7.51 -74.05 -0.56 18.55 16 38 H 0.27 12.97 8.31 -92.70 -0.77 12.20 16 39 H 0.07 3.04 8.03 -2.38 -0.02 3.02 16 40 H 0.04 2.00 8.04 -2.38 -0.02 1.98 16 Total: -1.00 -71.00 329.48 1.06 -69.94 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.16 Total: 28.97 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 4.04 Total: 8.26 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -2.47 Total: -70.52 kcal Atomic # 8 Polarization: -77.09 SS G_CDS: -2.37 Total: -79.46 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -71.00 1.06 -69.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592374691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.764 kcal (2) G-P(sol) polarization free energy of solvation -71.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds