Wall clock time and date at job start Tue Mar 31 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46397 * 2 1 4 4 C 1.52992 * 109.47464 * 239.99537 * 2 1 3 5 5 C 1.50704 * 109.47107 * 64.99783 * 4 2 1 6 6 O 1.20820 * 120.00032 * 359.97438 * 5 4 2 7 7 O 1.34228 * 119.99614 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.47305 * 119.98781 * 2 1 3 9 9 C 1.50697 * 109.47453 * 295.00813 * 8 2 1 10 10 O 1.21284 * 120.00071 * 359.97438 * 9 8 2 11 11 N 1.34776 * 119.99926 * 179.97438 * 9 8 2 12 12 C 1.47016 * 125.65127 * 359.97029 * 11 9 8 13 13 C 1.54317 * 107.27544 * 178.98694 * 12 11 9 14 14 C 1.55161 * 102.94040 * 337.81168 * 13 12 11 15 15 O 1.42903 * 111.00309 * 277.38547 * 14 13 12 16 16 C 1.50696 * 111.00179 * 153.57607 * 14 13 12 17 17 H 1.08003 * 119.99607 * 243.51886 * 16 14 13 18 18 C 1.37879 * 120.00584 * 63.24935 * 16 14 13 19 19 N 1.31521 * 119.99465 * 354.29255 * 18 16 14 20 20 Si 1.86794 * 120.00270 * 174.29525 * 18 16 14 21 21 H 1.48502 * 109.46911 * 94.98366 * 20 18 16 22 22 H 1.48502 * 109.47227 * 214.97830 * 20 18 16 23 23 H 1.48496 * 109.47481 * 334.98199 * 20 18 16 24 24 C 1.47426 * 125.64631 * 180.02562 * 11 9 8 25 25 H 1.08995 * 109.46927 * 60.00839 * 1 2 3 26 26 H 1.09008 * 109.46305 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47429 * 299.99968 * 1 2 3 28 28 H 1.09004 * 109.47155 * 184.99716 * 4 2 1 29 29 H 1.09000 * 109.46968 * 304.99667 * 4 2 1 30 30 H 0.96701 * 116.99520 * 179.97438 * 7 5 4 31 31 H 1.08998 * 109.47023 * 174.99924 * 8 2 1 32 32 H 1.09004 * 109.46341 * 55.00381 * 8 2 1 33 33 H 1.09007 * 109.87765 * 59.56967 * 12 11 9 34 34 H 1.09005 * 109.88215 * 298.40862 * 12 11 9 35 35 H 1.09001 * 110.72598 * 219.44849 * 13 12 11 36 36 H 1.08996 * 110.71948 * 96.17114 * 13 12 11 37 37 H 0.96701 * 114.00052 * 295.42104 * 15 14 13 38 38 H 0.97000 * 119.99793 * 180.02562 * 19 18 16 39 39 H 1.08997 * 110.37052 * 85.24270 * 24 11 9 40 40 H 1.09004 * 110.36714 * 322.91737 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4765 6 8 1.0133 1.0828 -2.3638 7 8 1.9832 -0.3904 -3.6951 8 6 2.0401 -0.7210 1.2494 9 6 1.6413 0.0574 2.4766 10 8 1.0116 1.0877 2.3632 11 7 1.9845 -0.3914 3.7003 12 6 2.7428 -1.6192 3.9811 13 6 2.9180 -1.7097 5.5116 14 6 2.7393 -0.2379 5.9694 15 8 3.9563 0.4962 5.8206 16 6 2.2418 -0.1709 7.3903 17 1 1.2746 0.2597 7.6040 18 6 3.0188 -0.6643 8.4169 19 7 4.1418 -1.2936 8.1475 20 14 2.4765 -0.4389 10.1901 21 1 1.7405 -1.6477 10.6401 22 1 3.6696 -0.2370 11.0508 23 1 1.5882 0.7469 10.2893 24 6 1.6606 0.2671 4.9789 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.1265 -0.7994 -1.2054 29 1 1.6055 -1.7199 -1.2949 30 1 1.7048 0.1426 -4.4524 31 1 3.1264 -0.7992 1.2057 32 1 1.6055 -1.7196 1.2954 33 1 3.7190 -1.5705 3.4984 34 1 2.1909 -2.4868 3.6192 35 1 3.9135 -2.0741 5.7650 36 1 2.1498 -2.3461 5.9508 37 1 4.6760 0.1832 6.3856 38 1 4.6882 -1.6411 8.8697 39 1 0.6673 -0.0283 5.3169 40 1 1.7199 1.3504 4.8735 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592374697.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:18 Heat of formation + Delta-G solvation = -189.978322 kcal Electronic energy + Delta-G solvation = -23004.527136 eV Core-core repulsion = 19397.758613 eV Total energy + Delta-G solvation = -3606.768523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.58230 -39.55728 -37.54556 -36.50914 -35.14333 -34.29770 -32.24918 -30.19546 -29.08329 -28.28681 -27.37464 -24.98934 -22.90469 -22.06822 -20.22066 -19.64234 -18.75693 -18.13982 -17.28190 -16.94923 -16.36224 -16.23059 -15.48596 -15.02620 -14.93783 -14.39026 -14.19318 -13.80566 -13.47342 -13.15167 -12.84701 -12.51798 -12.34517 -12.17524 -11.83057 -11.78320 -11.69481 -11.40557 -11.28667 -11.17190 -10.99108 -10.90047 -10.77719 -10.62053 -10.50612 -10.46751 -10.05616 -9.41478 -9.23498 -8.74789 -8.23408 -7.97341 -6.31276 -4.39058 2.03028 2.80439 3.09854 3.17598 3.26168 3.31197 3.60187 4.24943 4.52533 4.75734 4.84721 4.93431 5.04390 5.25515 5.32247 5.40412 5.51594 5.56825 5.68437 5.73352 5.80649 5.89343 6.01072 6.10430 6.26711 6.31765 6.38997 6.43284 6.58660 6.67107 6.88912 6.97522 7.28089 7.34202 7.70408 7.70746 7.98566 8.16012 8.62650 8.68313 9.28084 9.33998 10.75373 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.048077 B = 0.003151 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.256544 B = 8884.411647 C = 9117.227596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.065 4.065 3 H 0.089 0.911 4 C -0.111 4.111 5 C 0.477 3.523 6 O -0.506 6.506 7 O -0.522 6.522 8 C -0.132 4.132 9 C 0.522 3.478 10 O -0.550 6.550 11 N -0.608 5.608 12 C 0.098 3.902 13 C -0.135 4.135 14 C 0.247 3.753 15 O -0.582 6.582 16 C -0.536 4.536 17 H 0.065 0.935 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.902 3.098 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.120 3.880 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.408 0.592 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.380 0.620 38 H 0.267 0.733 39 H 0.070 0.930 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 -4.803 -16.333 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.084 4.084 3 H 0.107 0.893 4 C -0.148 4.148 5 C 0.319 3.681 6 O -0.393 6.393 7 O -0.334 6.334 8 C -0.172 4.172 9 C 0.311 3.689 10 O -0.429 6.429 11 N -0.341 5.341 12 C -0.025 4.025 13 C -0.174 4.174 14 C 0.206 3.794 15 O -0.390 6.390 16 C -0.574 4.574 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.729 3.271 21 H -0.206 1.206 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.001 4.001 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.266 0.734 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.229 0.771 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.763 -3.948 -16.439 16.998 hybrid contribution 0.055 -0.147 0.921 0.934 sum -1.708 -4.095 -15.518 16.140 Atomic orbital electron populations 1.22084 0.94013 1.01142 1.04440 1.20721 0.97562 1.00125 0.89950 0.89283 1.21508 1.03969 1.00132 0.89232 1.23570 0.75849 0.84059 0.84616 1.90733 1.37020 1.24670 1.86907 1.84547 1.75046 1.56590 1.17256 1.21670 1.02757 1.00115 0.92656 1.20063 0.79783 0.85561 0.83504 1.90647 1.41255 1.24919 1.86083 1.48649 1.54141 1.25316 1.05952 1.22200 0.94640 0.85681 0.99971 1.23177 1.03300 1.01372 0.89519 1.19609 0.82055 0.85962 0.91749 1.86148 1.23697 1.61357 1.67819 1.21449 1.04486 1.40563 0.90926 0.91716 1.24991 0.94847 0.93443 0.99736 1.69767 1.13735 1.36740 1.33060 0.86419 0.78346 0.78678 0.83652 1.20582 1.20948 1.19624 1.22345 0.98371 0.97893 0.81535 0.91607 0.93806 0.90129 0.87507 0.87536 0.73359 0.88948 0.89010 0.92430 0.92901 0.89466 0.91397 0.77110 0.92273 0.91139 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.68 37.16 0.32 -1.82 16 2 C -0.06 -0.79 1.68 -90.62 -0.15 -0.95 16 3 H 0.09 1.32 7.77 -51.93 -0.40 0.91 16 4 C -0.11 -0.96 5.29 -27.89 -0.15 -1.11 16 5 C 0.48 4.83 8.05 36.01 0.29 5.12 16 6 O -0.51 -6.95 14.72 -18.74 -0.28 -7.23 16 7 O -0.52 -3.92 13.42 -39.25 -0.53 -4.44 16 8 C -0.13 -1.65 4.37 -27.88 -0.12 -1.77 16 9 C 0.52 9.40 7.57 -10.99 -0.08 9.32 16 10 O -0.55 -11.69 14.22 5.55 0.08 -11.61 16 11 N -0.61 -11.65 3.33 -170.53 -0.57 -12.22 16 12 C 0.10 1.68 6.49 -3.07 -0.02 1.66 16 13 C -0.14 -2.81 5.37 -24.90 -0.13 -2.94 16 14 C 0.25 5.83 0.88 -89.63 -0.08 5.75 16 15 O -0.58 -14.49 13.17 -35.23 -0.46 -14.96 16 16 C -0.54 -13.73 8.25 -34.44 -0.28 -14.02 16 17 H 0.06 1.66 7.79 -52.48 -0.41 1.26 16 18 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 19 N -0.89 -22.48 10.76 55.43 0.60 -21.88 16 20 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 C 0.12 2.66 6.08 -2.53 -0.02 2.64 16 25 H 0.07 0.92 5.96 -51.93 -0.31 0.61 16 26 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.08 1.32 5.95 -51.93 -0.31 1.01 16 28 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.41 1.46 9.10 45.56 0.41 1.87 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.90 7.52 -51.93 -0.39 1.51 16 36 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 37 H 0.38 9.39 7.57 45.56 0.34 9.74 16 38 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 39 H 0.07 1.52 8.03 -51.93 -0.42 1.10 16 40 H 0.07 1.66 8.04 -51.93 -0.42 1.25 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -30.97 329.52 -6.14 -37.11 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -4.41 Total: 11.73 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.52 Total: 3.63 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.03 Total: -34.10 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -1.19 Total: -38.24 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.97 -6.14 -37.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592374697.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.870 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds