Wall clock time and date at job start Tue Mar 31 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46397 * 2 1 4 4 C 1.52992 * 109.47464 * 239.99537 * 2 1 3 5 5 C 1.50704 * 109.47107 * 64.99783 * 4 2 1 6 6 O 1.20820 * 120.00032 * 359.97438 * 5 4 2 7 7 O 1.34228 * 119.99614 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.47305 * 119.98781 * 2 1 3 9 9 C 1.50697 * 109.47453 * 295.00813 * 8 2 1 10 10 O 1.21284 * 120.00071 * 359.97438 * 9 8 2 11 11 N 1.34776 * 119.99926 * 179.97438 * 9 8 2 12 12 C 1.47016 * 125.65127 * 359.97029 * 11 9 8 13 13 C 1.54317 * 107.27544 * 178.98694 * 12 11 9 14 14 C 1.55161 * 102.94040 * 337.81168 * 13 12 11 15 15 O 1.42903 * 111.00309 * 277.38547 * 14 13 12 16 16 C 1.50696 * 111.00179 * 153.57607 * 14 13 12 17 17 H 1.08003 * 119.99607 * 243.51886 * 16 14 13 18 18 C 1.37879 * 120.00584 * 63.24935 * 16 14 13 19 19 N 1.31521 * 119.99465 * 354.29255 * 18 16 14 20 20 Si 1.86794 * 120.00270 * 174.29525 * 18 16 14 21 21 H 1.48502 * 109.46911 * 94.98366 * 20 18 16 22 22 H 1.48502 * 109.47227 * 214.97830 * 20 18 16 23 23 H 1.48496 * 109.47481 * 334.98199 * 20 18 16 24 24 C 1.47426 * 125.64631 * 180.02562 * 11 9 8 25 25 H 1.08995 * 109.46927 * 60.00839 * 1 2 3 26 26 H 1.09008 * 109.46305 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47429 * 299.99968 * 1 2 3 28 28 H 1.09004 * 109.47155 * 184.99716 * 4 2 1 29 29 H 1.09000 * 109.46968 * 304.99667 * 4 2 1 30 30 H 0.96701 * 116.99520 * 179.97438 * 7 5 4 31 31 H 1.08998 * 109.47023 * 174.99924 * 8 2 1 32 32 H 1.09004 * 109.46341 * 55.00381 * 8 2 1 33 33 H 1.09007 * 109.87765 * 59.56967 * 12 11 9 34 34 H 1.09005 * 109.88215 * 298.40862 * 12 11 9 35 35 H 1.09001 * 110.72598 * 219.44849 * 13 12 11 36 36 H 1.08996 * 110.71948 * 96.17114 * 13 12 11 37 37 H 0.96701 * 114.00052 * 295.42104 * 15 14 13 38 38 H 0.97000 * 119.99793 * 180.02562 * 19 18 16 39 39 H 1.08997 * 110.37052 * 85.24270 * 24 11 9 40 40 H 1.09004 * 110.36714 * 322.91737 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4765 6 8 1.0133 1.0828 -2.3638 7 8 1.9832 -0.3904 -3.6951 8 6 2.0401 -0.7210 1.2494 9 6 1.6413 0.0574 2.4766 10 8 1.0116 1.0877 2.3632 11 7 1.9845 -0.3914 3.7003 12 6 2.7428 -1.6192 3.9811 13 6 2.9180 -1.7097 5.5116 14 6 2.7393 -0.2379 5.9694 15 8 3.9563 0.4962 5.8206 16 6 2.2418 -0.1709 7.3903 17 1 1.2746 0.2597 7.6040 18 6 3.0188 -0.6643 8.4169 19 7 4.1418 -1.2936 8.1475 20 14 2.4765 -0.4389 10.1901 21 1 1.7405 -1.6477 10.6401 22 1 3.6696 -0.2370 11.0508 23 1 1.5882 0.7469 10.2893 24 6 1.6606 0.2671 4.9789 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.1265 -0.7994 -1.2054 29 1 1.6055 -1.7199 -1.2949 30 1 1.7048 0.1426 -4.4524 31 1 3.1264 -0.7992 1.2057 32 1 1.6055 -1.7196 1.2954 33 1 3.7190 -1.5705 3.4984 34 1 2.1909 -2.4868 3.6192 35 1 3.9135 -2.0741 5.7650 36 1 2.1498 -2.3461 5.9508 37 1 4.6760 0.1832 6.3856 38 1 4.6882 -1.6411 8.8697 39 1 0.6673 -0.0283 5.3169 40 1 1.7199 1.3504 4.8735 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592374697.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:17 Heat of formation + Delta-G solvation = -213.555433 kcal Electronic energy + Delta-G solvation = -23005.549516 eV Core-core repulsion = 19397.758613 eV Total energy + Delta-G solvation = -3607.790903 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.44248 -40.92366 -39.10815 -37.30537 -36.21927 -35.96306 -34.20628 -31.74859 -30.32157 -29.60978 -28.58491 -26.73525 -24.13402 -23.23791 -21.62506 -20.93685 -20.05081 -19.11429 -18.91901 -18.19893 -17.44919 -16.99295 -16.93900 -16.77732 -16.39694 -15.94092 -15.44857 -15.26891 -14.75175 -14.32520 -14.12629 -13.91584 -13.64354 -13.47260 -13.24897 -13.18135 -12.92858 -12.86546 -12.64821 -12.54677 -12.44756 -12.27670 -12.12240 -12.00178 -11.82371 -11.68713 -11.35765 -11.22508 -10.77118 -10.60943 -10.11310 -9.49495 -8.23517 -6.37648 1.30311 1.40880 1.45375 1.54338 1.72995 2.01846 2.33637 2.42610 3.00849 3.53782 3.79359 3.91531 3.97156 4.01437 4.10681 4.39306 4.42206 4.51977 4.59243 4.63671 4.67890 4.71440 4.73805 4.79762 4.93494 4.95507 5.15589 5.22115 5.31654 5.39725 5.48630 5.50081 5.60306 5.74589 5.79656 6.09534 6.64352 6.73724 7.07744 7.26659 7.32886 7.38540 8.81473 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.048077 B = 0.003151 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.256544 B = 8884.411647 C = 9117.227596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.062 4.062 3 H 0.053 0.947 4 C -0.104 4.104 5 C 0.479 3.521 6 O -0.553 6.553 7 O -0.514 6.514 8 C -0.119 4.119 9 C 0.512 3.488 10 O -0.592 6.592 11 N -0.613 5.613 12 C 0.105 3.895 13 C -0.126 4.126 14 C 0.233 3.767 15 O -0.592 6.592 16 C -0.564 4.564 17 H 0.051 0.949 18 C 0.039 3.961 19 N -0.902 5.902 20 Si 0.956 3.044 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.125 3.875 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.425 0.575 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.377 0.623 38 H 0.271 0.729 39 H 0.067 0.933 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 -7.403 -17.736 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.081 4.081 3 H 0.072 0.928 4 C -0.141 4.141 5 C 0.324 3.676 6 O -0.444 6.444 7 O -0.327 6.327 8 C -0.159 4.159 9 C 0.303 3.697 10 O -0.474 6.474 11 N -0.346 5.346 12 C -0.017 4.017 13 C -0.165 4.165 14 C 0.193 3.807 15 O -0.400 6.400 16 C -0.602 4.602 17 H 0.069 0.931 18 C -0.163 4.163 19 N -0.541 5.541 20 Si 0.782 3.218 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.204 1.204 24 C 0.002 3.998 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.286 0.714 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.226 0.774 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.885 -6.584 -17.882 19.076 hybrid contribution -0.226 0.715 1.329 1.526 sum -1.111 -5.870 -16.553 17.598 Atomic orbital electron populations 1.22008 0.95314 1.02000 1.01973 1.20609 0.96482 0.98973 0.92069 0.92817 1.21495 1.05731 1.00473 0.86367 1.23889 0.74726 0.83313 0.85680 1.90736 1.39318 1.26798 1.87585 1.84503 1.74457 1.56568 1.17182 1.21729 1.04627 1.00452 0.89043 1.21208 0.78630 0.85414 0.84404 1.90642 1.43020 1.27106 1.86650 1.48756 1.54679 1.25825 1.05309 1.22259 0.96189 0.86011 0.97209 1.22945 1.02318 0.98743 0.92451 1.19770 0.81702 0.87905 0.91366 1.86136 1.24085 1.62116 1.67688 1.21662 1.04451 1.41406 0.92697 0.93093 1.25558 0.95012 0.93129 1.02601 1.69817 1.13904 1.36439 1.33926 0.85578 0.77920 0.78356 0.79931 1.19820 1.20433 1.20436 1.22060 0.97973 0.96387 0.83417 0.92736 0.91194 0.93877 0.84669 0.84286 0.71408 0.86096 0.85399 0.90336 0.88826 0.90530 0.92187 0.77424 0.91969 0.91440 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 8.68 71.98 0.62 -3.43 16 2 C -0.06 -1.40 1.68 -10.79 -0.02 -1.42 16 3 H 0.05 1.59 7.77 -2.38 -0.02 1.57 16 4 C -0.10 -1.38 5.29 29.85 0.16 -1.22 16 5 C 0.48 8.63 8.05 71.24 0.57 9.21 16 6 O -0.55 -15.03 14.72 21.98 0.32 -14.71 16 7 O -0.51 -6.17 13.42 -51.39 -0.69 -6.86 16 8 C -0.12 -2.53 4.37 29.85 0.13 -2.40 16 9 C 0.51 17.90 7.57 87.66 0.66 18.56 16 10 O -0.59 -25.94 14.22 -3.04 -0.04 -25.98 16 11 N -0.61 -22.80 3.33 -811.81 -2.70 -25.50 16 12 C 0.11 3.27 6.49 86.73 0.56 3.84 16 13 C -0.13 -5.10 5.37 31.78 0.17 -4.93 16 14 C 0.23 11.12 0.88 -10.15 -0.01 11.11 16 15 O -0.59 -29.93 13.17 -148.98 -1.96 -31.90 16 16 C -0.56 -29.48 8.25 25.60 0.21 -29.27 16 17 H 0.05 2.72 7.79 -2.91 -0.02 2.69 16 18 C 0.04 1.96 5.26 84.65 0.45 2.40 16 19 N -0.90 -45.07 10.76 21.45 0.23 -44.84 16 20 Si 0.96 40.88 29.54 68.60 2.03 42.91 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 24 C 0.12 5.66 6.08 86.85 0.53 6.19 16 25 H 0.05 1.53 5.96 -2.39 -0.01 1.52 16 26 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.04 1.44 5.95 -2.39 -0.01 1.43 16 28 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.42 2.03 9.10 -74.06 -0.67 1.36 16 31 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.08 3.25 7.52 -2.39 -0.02 3.23 16 36 H 0.06 2.48 8.03 -2.39 -0.02 2.46 16 37 H 0.38 18.92 7.57 -74.06 -0.56 18.36 16 38 H 0.27 12.88 8.31 -92.71 -0.77 12.11 16 39 H 0.07 3.02 8.03 -2.39 -0.02 3.01 16 40 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 Total: -1.00 -70.95 329.52 1.06 -69.89 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.17 Total: 28.35 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 4.04 Total: 8.63 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -2.47 Total: -70.34 kcal Atomic # 8 Polarization: -77.07 SS G_CDS: -2.37 Total: -79.44 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -70.95 1.06 -69.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592374697.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.668 kcal (2) G-P(sol) polarization free energy of solvation -70.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds