Wall clock time and date at job start Tue Mar 31 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47042 * 2 1 4 4 C 1.52996 * 109.47319 * 120.00143 * 2 1 3 5 5 C 1.50706 * 109.47215 * 295.00377 * 4 2 1 6 6 O 1.20825 * 119.99859 * 359.97438 * 5 4 2 7 7 O 1.34224 * 120.00295 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47173 * 240.00315 * 2 1 3 9 9 C 1.50700 * 109.46949 * 64.99847 * 8 2 1 10 10 O 1.21277 * 120.00278 * 359.97438 * 9 8 2 11 11 N 1.34777 * 119.99583 * 179.97438 * 9 8 2 12 12 C 1.47026 * 125.65212 * 0.02759 * 11 9 8 13 13 C 1.54321 * 107.27407 * 181.02003 * 12 11 9 14 14 C 1.55160 * 102.94044 * 22.19138 * 13 12 11 15 15 O 1.42901 * 111.00453 * 82.57591 * 14 13 12 16 16 C 1.50699 * 111.00166 * 206.42199 * 14 13 12 17 17 H 1.08004 * 119.99725 * 118.54691 * 16 14 13 18 18 C 1.37871 * 120.00276 * 298.54648 * 16 14 13 19 19 N 1.31511 * 119.99967 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99919 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47118 * 90.00427 * 20 18 16 22 22 H 1.48504 * 109.46940 * 209.99866 * 20 18 16 23 23 H 1.48494 * 109.47371 * 329.99902 * 20 18 16 24 24 C 1.47426 * 125.64830 * 179.71500 * 11 9 8 25 25 H 1.09003 * 109.46805 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47480 * 299.99512 * 1 2 3 27 27 H 1.08998 * 109.47112 * 60.00226 * 1 2 3 28 28 H 1.08997 * 109.47192 * 175.00463 * 4 2 1 29 29 H 1.09000 * 109.47459 * 55.00543 * 4 2 1 30 30 H 0.96700 * 117.00196 * 179.97438 * 7 5 4 31 31 H 1.09003 * 109.46860 * 184.99798 * 8 2 1 32 32 H 1.08996 * 109.47360 * 304.99160 * 8 2 1 33 33 H 1.09001 * 109.87805 * 300.43678 * 12 11 9 34 34 H 1.09004 * 109.88255 * 61.44638 * 12 11 9 35 35 H 1.08995 * 110.72113 * 140.55538 * 13 12 11 36 36 H 1.09003 * 110.71954 * 263.83138 * 13 12 11 37 37 H 0.96693 * 113.99996 * 61.44563 * 15 14 13 38 38 H 0.97006 * 119.99871 * 179.97438 * 19 18 16 39 39 H 1.09002 * 110.36943 * 274.74986 * 24 11 9 40 40 H 1.09003 * 110.36406 * 37.07161 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 8 1.0139 1.0834 2.3637 7 8 1.9839 -0.3896 3.6951 8 6 2.0400 -0.7212 -1.2493 9 6 1.6413 0.0572 -2.4766 10 8 1.0108 1.0870 -2.3633 11 7 1.9853 -0.3912 -3.7001 12 6 2.7446 -1.6186 -3.9808 13 6 2.9207 -1.7086 -5.5113 14 6 2.7414 -0.2368 -5.9688 15 8 3.9576 0.4982 -5.8183 16 6 2.2446 -0.1698 -7.3900 17 1 1.2921 0.2904 -7.6079 18 6 3.0060 -0.6958 -8.4120 19 7 4.1656 -1.2565 -8.1465 20 14 2.3899 -0.6132 -10.1735 21 1 2.8613 0.6457 -10.8043 22 1 2.9135 -1.7751 -10.9360 23 1 0.9053 -0.6449 -10.1807 24 6 1.6570 0.2644 -4.9791 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.7994 1.2055 29 1 1.6055 -1.7199 1.2951 30 1 1.7060 0.1438 4.4523 31 1 3.1263 -0.7994 -1.2056 32 1 1.6055 -1.7198 -1.2952 33 1 3.7204 -1.5694 -3.4976 34 1 2.1942 -2.4863 -3.6170 35 1 3.9165 -2.0724 -5.7641 36 1 2.1531 -2.3454 -5.9510 37 1 4.6916 0.1564 -6.3468 38 1 4.7012 -1.6269 -8.8655 39 1 0.6648 -0.0361 -5.3158 40 1 1.7111 1.3480 -4.8748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592374699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:20 Heat of formation + Delta-G solvation = -189.925293 kcal Electronic energy + Delta-G solvation = -23006.216383 eV Core-core repulsion = 19399.450159 eV Total energy + Delta-G solvation = -3606.766224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58319 -39.55954 -37.54230 -36.50964 -35.14403 -34.27983 -32.24731 -30.19021 -29.08794 -28.28703 -27.37522 -24.98188 -22.90502 -22.07522 -20.22551 -19.65069 -18.76081 -18.14201 -17.26235 -16.94227 -16.36477 -16.23172 -15.48962 -15.02240 -14.94062 -14.39974 -14.19631 -13.81186 -13.47533 -13.14896 -12.84574 -12.52188 -12.34631 -12.17630 -11.83302 -11.78141 -11.67830 -11.37531 -11.32036 -11.18099 -10.99485 -10.90649 -10.78080 -10.63100 -10.49230 -10.46915 -10.04635 -9.43152 -9.24287 -8.70050 -8.24762 -7.97728 -6.30763 -4.38645 2.02913 2.80276 3.09613 3.18943 3.26360 3.29614 3.59755 4.25206 4.52268 4.75565 4.84498 4.94278 5.04303 5.25255 5.31988 5.40119 5.51049 5.56154 5.67976 5.72741 5.79971 5.88698 6.00110 6.10321 6.26570 6.31623 6.38864 6.42961 6.58475 6.66698 6.87470 6.96116 7.27294 7.31956 7.70307 7.71111 8.00178 8.15616 8.63178 8.68162 9.28433 9.37231 10.76608 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.047788 B = 0.003154 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.786197 B = 8876.387377 C = 9100.528405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.065 4.065 3 H 0.089 0.911 4 C -0.111 4.111 5 C 0.477 3.523 6 O -0.506 6.506 7 O -0.522 6.522 8 C -0.132 4.132 9 C 0.522 3.478 10 O -0.550 6.550 11 N -0.608 5.608 12 C 0.099 3.901 13 C -0.136 4.136 14 C 0.247 3.753 15 O -0.582 6.582 16 C -0.535 4.535 17 H 0.064 0.936 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.120 3.880 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.408 0.592 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.380 0.620 38 H 0.268 0.732 39 H 0.071 0.929 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 -4.992 16.403 17.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.084 4.084 3 H 0.107 0.893 4 C -0.148 4.148 5 C 0.319 3.681 6 O -0.393 6.393 7 O -0.334 6.334 8 C -0.172 4.172 9 C 0.311 3.689 10 O -0.429 6.429 11 N -0.341 5.341 12 C -0.024 4.024 13 C -0.175 4.175 14 C 0.207 3.793 15 O -0.391 6.391 16 C -0.573 4.573 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.002 4.002 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.266 0.734 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.230 0.770 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.852 -4.123 16.484 17.092 hybrid contribution 0.035 -0.217 -0.890 0.916 sum -1.817 -4.341 15.594 16.289 Atomic orbital electron populations 1.22081 0.94012 1.01143 1.04444 1.20719 0.97563 1.00126 0.89947 0.89281 1.21508 1.03966 1.00131 0.89232 1.23571 0.75843 0.84070 0.84614 1.90735 1.37058 1.24637 1.86905 1.84545 1.75034 1.56599 1.17262 1.21671 1.02759 1.00112 0.92663 1.20063 0.79778 0.85562 0.83505 1.90646 1.41227 1.24930 1.86076 1.48651 1.54031 1.25434 1.05960 1.22187 0.94664 0.85725 0.99853 1.23175 1.03241 1.01423 0.89668 1.19654 0.82114 0.85877 0.91669 1.86141 1.22588 1.59201 1.71140 1.21448 1.05787 1.38947 0.91137 0.91748 1.24983 0.94691 0.93681 0.99630 1.69716 1.11884 1.38629 1.33235 0.86421 0.79234 0.77742 0.83615 1.20406 1.21071 1.19712 1.22401 0.98355 0.97942 0.81483 0.93805 0.91608 0.90127 0.87506 0.87541 0.73355 0.88950 0.89009 0.92431 0.92887 0.89530 0.91366 0.77023 0.92248 0.91107 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.68 37.16 0.32 -1.82 16 2 C -0.06 -0.79 1.68 -90.62 -0.15 -0.94 16 3 H 0.09 1.32 7.77 -51.93 -0.40 0.91 16 4 C -0.11 -0.96 5.29 -27.88 -0.15 -1.10 16 5 C 0.48 4.83 8.05 36.01 0.29 5.12 16 6 O -0.51 -6.95 14.73 -18.75 -0.28 -7.22 16 7 O -0.52 -3.91 13.42 -39.24 -0.53 -4.44 16 8 C -0.13 -1.64 4.37 -27.88 -0.12 -1.77 16 9 C 0.52 9.39 7.57 -10.99 -0.08 9.31 16 10 O -0.55 -11.67 14.22 5.56 0.08 -11.59 16 11 N -0.61 -11.63 3.33 -170.38 -0.57 -12.20 16 12 C 0.10 1.68 6.48 -3.06 -0.02 1.66 16 13 C -0.14 -2.82 5.38 -24.90 -0.13 -2.96 16 14 C 0.25 5.84 0.87 -89.50 -0.08 5.76 16 15 O -0.58 -14.55 13.17 -35.23 -0.46 -15.02 16 16 C -0.53 -13.73 8.27 -34.44 -0.28 -14.02 16 17 H 0.06 1.66 7.79 -52.48 -0.41 1.25 16 18 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 19 N -0.90 -22.57 10.76 55.43 0.60 -21.97 16 20 Si 0.90 19.95 29.54 -169.99 -5.02 14.92 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 24 C 0.12 2.65 6.09 -2.41 -0.01 2.63 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.92 5.96 -51.93 -0.31 0.61 16 27 H 0.08 1.32 5.95 -51.93 -0.31 1.01 16 28 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.41 1.46 9.10 45.56 0.41 1.87 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.87 7.55 -51.93 -0.39 1.48 16 36 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 37 H 0.38 9.43 7.57 45.56 0.34 9.78 16 38 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 39 H 0.07 1.52 8.03 -51.93 -0.42 1.11 16 40 H 0.07 1.66 8.03 -51.93 -0.42 1.24 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -31.05 329.58 -6.14 -37.19 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -4.41 Total: 11.74 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -0.52 Total: 3.62 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.03 Total: -34.17 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.19 Total: -38.27 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.05 -6.14 -37.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592374699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.735 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds