Wall clock time and date at job start Tue Mar 31 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47042 * 2 1 4 4 C 1.52996 * 109.47319 * 120.00143 * 2 1 3 5 5 C 1.50706 * 109.47215 * 295.00377 * 4 2 1 6 6 O 1.20825 * 119.99859 * 359.97438 * 5 4 2 7 7 O 1.34224 * 120.00295 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47173 * 240.00315 * 2 1 3 9 9 C 1.50700 * 109.46949 * 64.99847 * 8 2 1 10 10 O 1.21277 * 120.00278 * 359.97438 * 9 8 2 11 11 N 1.34777 * 119.99583 * 179.97438 * 9 8 2 12 12 C 1.47026 * 125.65212 * 0.02759 * 11 9 8 13 13 C 1.54321 * 107.27407 * 181.02003 * 12 11 9 14 14 C 1.55160 * 102.94044 * 22.19138 * 13 12 11 15 15 O 1.42901 * 111.00453 * 82.57591 * 14 13 12 16 16 C 1.50699 * 111.00166 * 206.42199 * 14 13 12 17 17 H 1.08004 * 119.99725 * 118.54691 * 16 14 13 18 18 C 1.37871 * 120.00276 * 298.54648 * 16 14 13 19 19 N 1.31511 * 119.99967 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99919 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47118 * 90.00427 * 20 18 16 22 22 H 1.48504 * 109.46940 * 209.99866 * 20 18 16 23 23 H 1.48494 * 109.47371 * 329.99902 * 20 18 16 24 24 C 1.47426 * 125.64830 * 179.71500 * 11 9 8 25 25 H 1.09003 * 109.46805 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47480 * 299.99512 * 1 2 3 27 27 H 1.08998 * 109.47112 * 60.00226 * 1 2 3 28 28 H 1.08997 * 109.47192 * 175.00463 * 4 2 1 29 29 H 1.09000 * 109.47459 * 55.00543 * 4 2 1 30 30 H 0.96700 * 117.00196 * 179.97438 * 7 5 4 31 31 H 1.09003 * 109.46860 * 184.99798 * 8 2 1 32 32 H 1.08996 * 109.47360 * 304.99160 * 8 2 1 33 33 H 1.09001 * 109.87805 * 300.43678 * 12 11 9 34 34 H 1.09004 * 109.88255 * 61.44638 * 12 11 9 35 35 H 1.08995 * 110.72113 * 140.55538 * 13 12 11 36 36 H 1.09003 * 110.71954 * 263.83138 * 13 12 11 37 37 H 0.96693 * 113.99996 * 61.44563 * 15 14 13 38 38 H 0.97006 * 119.99871 * 179.97438 * 19 18 16 39 39 H 1.09002 * 110.36943 * 274.74986 * 24 11 9 40 40 H 1.09003 * 110.36406 * 37.07161 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 8 1.0139 1.0834 2.3637 7 8 1.9839 -0.3896 3.6951 8 6 2.0400 -0.7212 -1.2493 9 6 1.6413 0.0572 -2.4766 10 8 1.0108 1.0870 -2.3633 11 7 1.9853 -0.3912 -3.7001 12 6 2.7446 -1.6186 -3.9808 13 6 2.9207 -1.7086 -5.5113 14 6 2.7414 -0.2368 -5.9688 15 8 3.9576 0.4982 -5.8183 16 6 2.2446 -0.1698 -7.3900 17 1 1.2921 0.2904 -7.6079 18 6 3.0060 -0.6958 -8.4120 19 7 4.1656 -1.2565 -8.1465 20 14 2.3899 -0.6132 -10.1735 21 1 2.8613 0.6457 -10.8043 22 1 2.9135 -1.7751 -10.9360 23 1 0.9053 -0.6449 -10.1807 24 6 1.6570 0.2644 -4.9791 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.7994 1.2055 29 1 1.6055 -1.7199 1.2951 30 1 1.7060 0.1438 4.4523 31 1 3.1263 -0.7994 -1.2056 32 1 1.6055 -1.7198 -1.2952 33 1 3.7204 -1.5694 -3.4976 34 1 2.1942 -2.4863 -3.6170 35 1 3.9165 -2.0724 -5.7641 36 1 2.1531 -2.3454 -5.9510 37 1 4.6916 0.1564 -6.3468 38 1 4.7012 -1.6269 -8.8655 39 1 0.6648 -0.0361 -5.3158 40 1 1.7111 1.3480 -4.8748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592374699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:20 Heat of formation + Delta-G solvation = -213.594188 kcal Electronic energy + Delta-G solvation = -23007.242743 eV Core-core repulsion = 19399.450159 eV Total energy + Delta-G solvation = -3607.792584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44218 -40.92227 -39.10181 -37.30510 -36.21154 -35.95296 -34.20748 -31.74114 -30.32254 -29.60768 -28.58537 -26.72714 -24.13311 -23.24047 -21.63456 -20.93817 -20.05281 -19.08665 -18.91882 -18.20030 -17.44953 -16.99225 -16.93346 -16.77988 -16.40097 -15.94581 -15.45505 -15.26288 -14.75270 -14.32262 -14.12519 -13.91156 -13.61784 -13.47270 -13.22425 -13.19089 -12.97180 -12.86710 -12.65780 -12.54829 -12.44064 -12.25080 -12.12315 -12.00233 -11.81565 -11.68711 -11.35898 -11.24083 -10.75038 -10.58611 -10.12973 -9.49542 -8.23179 -6.37599 1.30295 1.41914 1.45517 1.53602 1.73063 2.01770 2.33669 2.42804 3.01830 3.53541 3.79251 3.91523 3.97155 4.01332 4.10469 4.39557 4.41465 4.51887 4.59132 4.63695 4.67866 4.71372 4.73770 4.79572 4.93377 4.95433 5.15538 5.21534 5.31385 5.39538 5.48517 5.50092 5.58277 5.74602 5.79308 6.11081 6.64756 6.73676 7.07735 7.26695 7.32783 7.41764 8.82433 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.047788 B = 0.003154 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.786197 B = 8876.387377 C = 9100.528405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.062 4.062 3 H 0.053 0.947 4 C -0.104 4.104 5 C 0.479 3.521 6 O -0.553 6.553 7 O -0.514 6.514 8 C -0.119 4.119 9 C 0.512 3.488 10 O -0.592 6.592 11 N -0.613 5.613 12 C 0.105 3.895 13 C -0.127 4.127 14 C 0.233 3.767 15 O -0.593 6.593 16 C -0.563 4.563 17 H 0.050 0.950 18 C 0.039 3.961 19 N -0.904 5.904 20 Si 0.957 3.043 21 H -0.281 1.281 22 H -0.276 1.276 23 H -0.273 1.273 24 C 0.125 3.875 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.425 0.575 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.377 0.623 38 H 0.271 0.729 39 H 0.068 0.932 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.408 -7.654 17.812 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.081 4.081 3 H 0.072 0.928 4 C -0.141 4.141 5 C 0.324 3.676 6 O -0.444 6.444 7 O -0.327 6.327 8 C -0.159 4.159 9 C 0.303 3.697 10 O -0.474 6.474 11 N -0.346 5.346 12 C -0.016 4.016 13 C -0.166 4.166 14 C 0.193 3.807 15 O -0.401 6.401 16 C -0.601 4.601 17 H 0.069 0.931 18 C -0.163 4.163 19 N -0.543 5.543 20 Si 0.783 3.217 21 H -0.207 1.207 22 H -0.201 1.201 23 H -0.198 1.198 24 C 0.001 3.999 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.286 0.714 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.227 0.773 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.016 -6.819 17.933 19.212 hybrid contribution -0.230 0.669 -1.300 1.480 sum -1.245 -6.150 16.633 17.777 Atomic orbital electron populations 1.22005 0.95315 1.02002 1.01971 1.20606 0.96482 0.98971 0.92075 0.92826 1.21495 1.05727 1.00475 0.86362 1.23892 0.74718 0.83324 0.85679 1.90738 1.39358 1.26768 1.87584 1.84501 1.74442 1.56579 1.17188 1.21730 1.04633 1.00451 0.89037 1.21209 0.78628 0.85412 0.84411 1.90640 1.43005 1.27126 1.86647 1.48759 1.54566 1.25959 1.05303 1.22251 0.96216 0.86050 0.97109 1.22948 1.02322 0.98738 0.92588 1.19821 0.81734 0.87889 0.91280 1.86129 1.23000 1.59995 1.71023 1.21670 1.05757 1.39774 0.92925 0.93128 1.25560 0.94922 0.93330 1.02502 1.69768 1.12094 1.38315 1.34089 0.85577 0.78613 0.77656 0.79856 1.20730 1.20109 1.19814 1.22113 0.97963 0.96405 0.83382 0.91188 0.92745 0.93878 0.84668 0.84283 0.71406 0.86093 0.85382 0.90327 0.88773 0.90549 0.92066 0.77335 0.91960 0.91384 0.94221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 8.68 71.98 0.62 -3.43 16 2 C -0.06 -1.40 1.68 -10.80 -0.02 -1.41 16 3 H 0.05 1.59 7.77 -2.39 -0.02 1.57 16 4 C -0.10 -1.37 5.29 29.85 0.16 -1.21 16 5 C 0.48 8.62 8.05 71.24 0.57 9.19 16 6 O -0.55 -15.03 14.73 21.97 0.32 -14.71 16 7 O -0.51 -6.16 13.42 -51.35 -0.69 -6.85 16 8 C -0.12 -2.53 4.37 29.85 0.13 -2.40 16 9 C 0.51 17.87 7.57 87.66 0.66 18.53 16 10 O -0.59 -25.93 14.22 -3.02 -0.04 -25.97 16 11 N -0.61 -22.76 3.33 -811.34 -2.70 -25.45 16 12 C 0.11 3.27 6.48 86.73 0.56 3.83 16 13 C -0.13 -5.13 5.38 31.78 0.17 -4.96 16 14 C 0.23 11.14 0.87 -10.07 -0.01 11.13 16 15 O -0.59 -30.11 13.17 -148.98 -1.96 -32.08 16 16 C -0.56 -29.48 8.27 25.60 0.21 -29.27 16 17 H 0.05 2.70 7.79 -2.91 -0.02 2.68 16 18 C 0.04 1.95 5.29 84.65 0.45 2.40 16 19 N -0.90 -45.27 10.76 21.44 0.23 -45.04 16 20 Si 0.96 40.89 29.54 68.60 2.03 42.91 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 C 0.12 5.64 6.09 86.93 0.53 6.17 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 1.53 5.96 -2.39 -0.01 1.51 16 27 H 0.04 1.44 5.95 -2.39 -0.01 1.42 16 28 H 0.14 1.10 8.14 -2.39 -0.02 1.09 16 29 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.42 2.03 9.10 -74.06 -0.67 1.35 16 31 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.08 3.22 7.55 -2.39 -0.02 3.20 16 36 H 0.06 2.51 8.03 -2.39 -0.02 2.49 16 37 H 0.38 19.01 7.57 -74.06 -0.56 18.45 16 38 H 0.27 12.92 8.31 -92.70 -0.77 12.15 16 39 H 0.07 3.04 8.03 -2.39 -0.02 3.03 16 40 H 0.04 1.98 8.03 -2.39 -0.02 1.97 16 Total: -1.00 -71.21 329.58 1.07 -70.15 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.17 Total: 28.46 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 4.04 Total: 8.57 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -2.47 Total: -70.49 kcal Atomic # 8 Polarization: -77.23 SS G_CDS: -2.37 Total: -79.60 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Total: -71.21 1.07 -70.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592374699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.449 kcal (2) G-P(sol) polarization free energy of solvation -71.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds