Wall clock time and date at job start Tue Mar 31 2020 05:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99759 * 2 1 4 4 H 1.48496 * 109.47036 * 240.00332 * 3 2 1 5 5 H 1.48498 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47015 * 120.00367 * 3 2 1 7 7 C 1.37873 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00353 * 173.37598 * 7 2 1 9 9 C 1.50702 * 120.00049 * 353.36521 * 7 2 1 10 10 C 1.53002 * 115.54521 * 85.35880 * 9 7 2 11 11 N 1.46495 * 109.47431 * 65.12567 * 10 9 7 12 12 C 1.39558 * 120.00407 * 180.71987 * 11 10 9 13 13 C 1.39015 * 119.95895 * 179.97438 * 12 11 10 14 14 C 1.37867 * 120.04315 * 180.02562 * 13 12 11 15 15 C 1.39369 * 119.95658 * 359.97438 * 14 13 12 16 16 C 1.48410 * 120.03868 * 179.97438 * 15 14 13 17 17 N 1.34063 * 126.68136 * 0.02898 * 16 15 14 18 18 N 1.28988 * 107.26525 * 179.97438 * 17 16 15 19 19 N 1.28726 * 108.95071 * 359.97438 * 18 17 16 20 20 H 0.97000 * 125.33439 * 179.97438 * 19 18 17 21 21 N 1.28868 * 109.32664 * 0.02562 * 19 18 17 22 22 C 1.39368 * 119.91226 * 0.25382 * 15 14 13 23 23 C 1.37860 * 119.96131 * 359.53470 * 22 15 14 24 24 C 1.52997 * 117.50561 * 231.02862 * 9 7 2 25 25 C 1.53001 * 117.50243 * 299.69426 * 9 7 2 26 26 H 0.96993 * 119.99967 * 5.05543 * 1 2 3 27 27 H 1.09006 * 109.47506 * 305.12306 * 10 9 7 28 28 H 1.08997 * 109.47092 * 185.12848 * 10 9 7 29 29 H 0.97005 * 119.99473 * 0.71718 * 11 10 9 30 30 H 1.08008 * 119.97879 * 0.02562 * 13 12 11 31 31 H 1.08005 * 120.01804 * 179.97438 * 14 13 12 32 32 H 1.08007 * 120.01609 * 179.71986 * 22 15 14 33 33 H 1.07995 * 119.98010 * 180.21136 * 23 22 15 34 34 H 1.08996 * 117.50199 * 215.00788 * 24 9 7 35 35 H 1.09000 * 117.49457 * 0.02562 * 24 9 7 36 36 H 1.08997 * 117.49569 * 359.97133 * 25 9 7 37 37 H 1.08998 * 117.50413 * 144.97090 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0792 -1.1971 -0.1084 9 6 1.2588 -2.4948 0.1497 10 6 0.6981 -3.0872 -1.1448 11 7 1.8040 -3.4603 -2.0303 12 6 1.5382 -4.0116 -3.2845 13 6 2.5883 -4.3647 -4.1242 14 6 2.3278 -4.9090 -5.3638 15 6 1.0106 -5.1056 -5.7747 16 6 0.7280 -5.6908 -7.1089 17 7 1.6309 -6.0771 -8.0215 18 7 0.9784 -6.5292 -9.0381 19 7 -0.2832 -6.4415 -8.7978 20 1 -0.9900 -6.7147 -9.4034 21 7 -0.4600 -5.9328 -7.6270 22 6 -0.0408 -4.7464 -4.9333 23 6 0.2237 -4.2065 -3.6927 24 6 1.7513 -3.4724 1.2186 25 6 0.4468 -2.6999 1.4301 26 1 -0.4850 0.8367 -0.0740 27 1 0.0694 -2.3475 -1.6406 28 1 0.1045 -3.9714 -0.9126 29 1 2.7210 -3.3240 -1.7448 30 1 3.6090 -4.2127 -3.8053 31 1 3.1439 -5.1829 -6.0160 32 1 -1.0623 -4.8938 -5.2518 33 1 -0.5907 -3.9313 -3.0391 34 1 1.6760 -4.5375 0.9997 35 1 2.6146 -3.1744 1.8136 36 1 0.4524 -1.8941 2.1641 37 1 -0.4870 -3.2565 1.3503 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592675954.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:55 Heat of formation + Delta-G solvation = 170.380024 kcal Electronic energy + Delta-G solvation = -20942.427212 eV Core-core repulsion = 17723.179421 eV Total energy + Delta-G solvation = -3219.247791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.33504 -39.13035 -37.05596 -34.84470 -34.05922 -32.77300 -32.03246 -30.68850 -29.05514 -26.06588 -25.21729 -24.63011 -23.39600 -22.03168 -21.27671 -20.79362 -19.36778 -18.98713 -17.04544 -16.96306 -16.39460 -15.99390 -14.95765 -14.71930 -14.17843 -14.01723 -13.77797 -13.46561 -13.07521 -13.05517 -12.72588 -12.40722 -12.17554 -11.78059 -11.53782 -11.30148 -11.13548 -11.04763 -11.02123 -10.84116 -10.59063 -10.57046 -10.31880 -9.64902 -9.41774 -8.91202 -8.68049 -8.55234 -8.28607 -6.84285 -6.14443 -4.22589 1.01036 1.41299 1.77168 2.29413 2.66509 3.24289 3.29929 3.32131 3.89568 4.04803 4.23630 4.31716 4.35927 5.13812 5.20241 5.26758 5.28861 5.48238 5.57190 5.71054 5.86366 5.91113 6.03462 6.23923 6.29265 6.35471 6.37749 6.45582 6.59436 6.64809 6.70518 6.74839 6.81603 6.99633 7.13730 7.31824 7.39230 7.75672 7.91733 8.24238 8.26972 8.35639 8.78032 9.44712 10.93380 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.025639 B = 0.003276 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.822962 B = 8544.922008 C = 8877.301766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.030 3.970 10 C 0.160 3.840 11 N -0.708 5.708 12 C 0.258 3.742 13 C -0.214 4.214 14 C -0.021 4.021 15 C -0.117 4.117 16 C 0.248 3.752 17 N -0.281 5.281 18 N -0.059 5.059 19 N -0.236 5.236 20 H 0.471 0.529 21 N -0.312 5.312 22 C -0.023 4.023 23 C -0.210 4.210 24 C -0.210 4.210 25 C -0.148 4.148 26 H 0.263 0.737 27 H 0.071 0.929 28 H 0.033 0.967 29 H 0.403 0.597 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 -10.620 -11.245 15.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.029 3.971 10 C 0.037 3.963 11 N -0.329 5.329 12 C 0.146 3.854 13 C -0.238 4.238 14 C -0.042 4.042 15 C -0.123 4.123 16 C -0.031 4.031 17 N -0.154 5.154 18 N -0.055 5.055 19 N -0.081 5.081 20 H 0.324 0.676 21 N -0.163 5.163 22 C -0.044 4.044 23 C -0.234 4.234 24 C -0.248 4.248 25 C -0.186 4.186 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.238 0.762 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.357 -10.657 -11.581 15.796 hybrid contribution 0.065 1.073 0.118 1.081 sum -1.292 -9.584 -11.463 14.998 Atomic orbital electron populations 1.69947 1.05883 1.27115 1.48290 1.24961 0.94818 0.98947 0.94167 0.86687 0.79708 0.83086 0.78726 1.20162 1.21240 1.20195 1.20305 0.92892 0.88627 1.52016 0.92275 1.18969 0.98581 0.93947 0.85622 1.21101 0.87775 0.96277 0.91167 1.45094 1.10312 1.63885 1.13591 1.18195 0.93469 0.88258 0.85528 1.20474 0.98133 1.09681 0.95471 1.20741 0.94905 0.93780 0.94761 1.16826 0.94361 1.11858 0.89292 1.23812 0.83764 0.98571 0.96925 1.76055 1.26289 1.14957 0.98095 1.78825 0.90137 1.16055 1.20459 1.47654 1.07977 1.40355 1.12120 0.67552 1.74960 1.25771 1.18738 0.96862 1.20780 0.97964 0.93472 0.92162 1.20579 0.95345 1.09315 0.98125 1.23027 0.98639 0.95683 1.07412 1.22500 0.92277 1.01098 1.02772 0.92765 0.91126 0.94903 0.76174 0.85738 0.85474 0.85775 0.85401 0.91577 0.90367 0.89828 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.41 12.92 55.43 0.72 -22.69 16 2 C 0.08 1.94 5.39 -17.82 -0.10 1.84 16 3 Si 0.89 20.25 29.55 -169.99 -5.02 15.23 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.50 -12.53 8.66 -34.44 -0.30 -12.83 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.06 16 9 C 0.03 0.66 1.37 -155.66 -0.21 0.44 16 10 C 0.16 3.24 4.73 -4.04 -0.02 3.22 16 11 N -0.71 -12.69 5.64 -58.61 -0.33 -13.02 16 12 C 0.26 4.24 6.65 -83.77 -0.56 3.69 16 13 C -0.21 -3.15 9.88 -39.43 -0.39 -3.54 16 14 C -0.02 -0.29 9.69 -39.30 -0.38 -0.68 16 15 C -0.12 -1.72 5.88 -104.87 -0.62 -2.34 16 16 C 0.25 3.54 7.93 -156.29 -1.24 2.31 16 17 N -0.28 -4.04 12.23 32.15 0.39 -3.64 16 18 N -0.06 -0.72 13.47 60.35 0.81 0.09 16 19 N -0.24 -2.24 7.90 60.35 0.48 -1.77 16 20 H 0.47 2.06 8.96 -340.37 -3.05 -0.99 16 21 N -0.31 -3.90 12.08 32.17 0.39 -3.51 16 22 C -0.02 -0.33 9.69 -39.30 -0.38 -0.71 16 23 C -0.21 -3.34 9.29 -39.43 -0.37 -3.71 16 24 C -0.21 -4.19 9.96 -26.69 -0.27 -4.46 16 25 C -0.15 -3.22 9.43 -26.69 -0.25 -3.47 16 26 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 27 H 0.07 1.61 7.91 -51.93 -0.41 1.20 16 28 H 0.03 0.62 7.93 -51.93 -0.41 0.21 16 29 H 0.40 7.08 8.40 -40.82 -0.34 6.73 16 30 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 31 H 0.13 1.63 7.88 -52.48 -0.41 1.21 16 32 H 0.12 1.62 7.88 -52.48 -0.41 1.21 16 33 H 0.13 2.03 6.71 -52.49 -0.35 1.68 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -28.41 326.08 -9.78 -38.19 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.05 Total: 6.43 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -5.08 Total: -20.23 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 2.46 Total: -44.54 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.41 -9.78 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592675954.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.568 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds