Wall clock time and date at job start Tue Mar 31 2020 05:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99759 * 2 1 4 4 H 1.48496 * 109.47036 * 240.00332 * 3 2 1 5 5 H 1.48498 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47015 * 120.00367 * 3 2 1 7 7 C 1.37873 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00353 * 173.37598 * 7 2 1 9 9 C 1.50702 * 120.00049 * 353.36521 * 7 2 1 10 10 C 1.53002 * 115.54521 * 85.35880 * 9 7 2 11 11 N 1.46495 * 109.47431 * 65.12567 * 10 9 7 12 12 C 1.39558 * 120.00407 * 180.71987 * 11 10 9 13 13 C 1.39015 * 119.95895 * 179.97438 * 12 11 10 14 14 C 1.37867 * 120.04315 * 180.02562 * 13 12 11 15 15 C 1.39369 * 119.95658 * 359.97438 * 14 13 12 16 16 C 1.48410 * 120.03868 * 179.97438 * 15 14 13 17 17 N 1.34063 * 126.68136 * 0.02898 * 16 15 14 18 18 N 1.28988 * 107.26525 * 179.97438 * 17 16 15 19 19 N 1.28726 * 108.95071 * 359.97438 * 18 17 16 20 20 H 0.97000 * 125.33439 * 179.97438 * 19 18 17 21 21 N 1.28868 * 109.32664 * 0.02562 * 19 18 17 22 22 C 1.39368 * 119.91226 * 0.25382 * 15 14 13 23 23 C 1.37860 * 119.96131 * 359.53470 * 22 15 14 24 24 C 1.52997 * 117.50561 * 231.02862 * 9 7 2 25 25 C 1.53001 * 117.50243 * 299.69426 * 9 7 2 26 26 H 0.96993 * 119.99967 * 5.05543 * 1 2 3 27 27 H 1.09006 * 109.47506 * 305.12306 * 10 9 7 28 28 H 1.08997 * 109.47092 * 185.12848 * 10 9 7 29 29 H 0.97005 * 119.99473 * 0.71718 * 11 10 9 30 30 H 1.08008 * 119.97879 * 0.02562 * 13 12 11 31 31 H 1.08005 * 120.01804 * 179.97438 * 14 13 12 32 32 H 1.08007 * 120.01609 * 179.71986 * 22 15 14 33 33 H 1.07995 * 119.98010 * 180.21136 * 23 22 15 34 34 H 1.08996 * 117.50199 * 215.00788 * 24 9 7 35 35 H 1.09000 * 117.49457 * 0.02562 * 24 9 7 36 36 H 1.08997 * 117.49569 * 359.97133 * 25 9 7 37 37 H 1.08998 * 117.50413 * 144.97090 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0792 -1.1971 -0.1084 9 6 1.2588 -2.4948 0.1497 10 6 0.6981 -3.0872 -1.1448 11 7 1.8040 -3.4603 -2.0303 12 6 1.5382 -4.0116 -3.2845 13 6 2.5883 -4.3647 -4.1242 14 6 2.3278 -4.9090 -5.3638 15 6 1.0106 -5.1056 -5.7747 16 6 0.7280 -5.6908 -7.1089 17 7 1.6309 -6.0771 -8.0215 18 7 0.9784 -6.5292 -9.0381 19 7 -0.2832 -6.4415 -8.7978 20 1 -0.9900 -6.7147 -9.4034 21 7 -0.4600 -5.9328 -7.6270 22 6 -0.0408 -4.7464 -4.9333 23 6 0.2237 -4.2065 -3.6927 24 6 1.7513 -3.4724 1.2186 25 6 0.4468 -2.6999 1.4301 26 1 -0.4850 0.8367 -0.0740 27 1 0.0694 -2.3475 -1.6406 28 1 0.1045 -3.9714 -0.9126 29 1 2.7210 -3.3240 -1.7448 30 1 3.6090 -4.2127 -3.8053 31 1 3.1439 -5.1829 -6.0160 32 1 -1.0623 -4.8938 -5.2518 33 1 -0.5907 -3.9313 -3.0391 34 1 1.6760 -4.5375 0.9997 35 1 2.6146 -3.1744 1.8136 36 1 0.4524 -1.8941 2.1641 37 1 -0.4870 -3.2565 1.3503 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592675954.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:54 Heat of formation + Delta-G solvation = 153.719797 kcal Electronic energy + Delta-G solvation = -20943.149653 eV Core-core repulsion = 17723.179421 eV Total energy + Delta-G solvation = -3219.970232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.31458 -40.36211 -38.65326 -36.12033 -35.09463 -34.01914 -33.81220 -31.85474 -30.30683 -27.76341 -26.84561 -25.63031 -24.53058 -23.22544 -22.90620 -22.00232 -21.01452 -20.02264 -18.28600 -18.01096 -17.97665 -17.29176 -16.63190 -16.31271 -15.64329 -15.28352 -15.12934 -14.70227 -14.44689 -14.29110 -14.17870 -13.59072 -13.54400 -13.32133 -12.93458 -12.82055 -12.79382 -12.39488 -12.29763 -12.15563 -12.04967 -11.97605 -11.71970 -11.39386 -10.88917 -10.50730 -10.41490 -10.00598 -9.83769 -8.15162 -8.08213 -6.20914 -0.01432 0.34823 0.60526 1.42794 1.44772 1.50217 1.53408 1.55244 2.42455 2.65193 2.88535 3.05537 3.19244 3.32714 3.56687 4.07598 4.15765 4.27489 4.38091 4.55110 4.57680 4.58519 4.66820 4.71053 4.78294 4.82912 5.01725 5.07540 5.19816 5.29382 5.46411 5.50138 5.64179 5.64955 5.65940 5.73419 5.79064 5.95357 6.37816 6.56208 6.84075 7.02577 7.24990 7.47895 8.97354 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.025639 B = 0.003276 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.822962 B = 8544.922008 C = 8877.301766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.031 3.969 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.507 4.507 8 H 0.055 0.945 9 C 0.008 3.992 10 C 0.180 3.820 11 N -0.715 5.715 12 C 0.238 3.762 13 C -0.209 4.209 14 C -0.021 4.021 15 C -0.115 4.115 16 C 0.231 3.769 17 N -0.302 5.302 18 N -0.060 5.060 19 N -0.205 5.205 20 H 0.492 0.508 21 N -0.311 5.311 22 C -0.022 4.022 23 C -0.220 4.220 24 C -0.183 4.183 25 C -0.158 4.158 26 H 0.259 0.741 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.404 0.596 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 -11.800 -12.563 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.170 4.170 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.007 3.993 10 C 0.056 3.944 11 N -0.338 5.338 12 C 0.128 3.872 13 C -0.232 4.232 14 C -0.042 4.042 15 C -0.121 4.121 16 C -0.047 4.047 17 N -0.174 5.174 18 N -0.055 5.055 19 N -0.055 5.055 20 H 0.351 0.649 21 N -0.163 5.163 22 C -0.043 4.043 23 C -0.243 4.243 24 C -0.220 4.220 25 C -0.196 4.196 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.239 0.761 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.140 0.860 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.909 -11.863 -12.941 17.579 hybrid contribution -0.122 1.336 0.365 1.390 sum -1.031 -10.527 -12.576 16.433 Atomic orbital electron populations 1.70051 1.06896 1.27324 1.49801 1.25576 0.95459 1.01583 0.94431 0.85857 0.78547 0.80029 0.78630 1.19947 1.21476 1.19922 1.20608 0.92937 0.90022 1.50893 0.92669 1.19040 0.99384 0.94053 0.86793 1.20662 0.87996 0.95561 0.90215 1.44866 1.09514 1.65258 1.14119 1.18374 0.94217 0.89192 0.85371 1.20655 0.98526 1.08782 0.95213 1.20922 0.95283 0.93347 0.94684 1.17002 0.94598 1.10976 0.89564 1.23755 0.84324 0.99606 0.97053 1.76039 1.27022 1.15810 0.98560 1.78774 0.90819 1.16050 1.19906 1.47715 1.08074 1.38265 1.11481 0.64934 1.74919 1.25236 1.18543 0.97643 1.20880 0.98769 0.93068 0.91600 1.20639 0.95167 1.09786 0.98695 1.22997 0.97343 0.96460 1.05180 1.22435 0.93800 1.01221 1.02135 0.93169 0.94493 0.93853 0.76117 0.84112 0.83999 0.84437 0.86037 0.89152 0.90351 0.92229 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.20 12.92 21.45 0.28 -48.92 16 2 C 0.03 1.59 5.39 84.65 0.46 2.04 16 3 Si 0.94 41.88 29.55 68.60 2.03 43.90 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.51 -25.48 8.66 25.60 0.22 -25.26 16 8 H 0.06 2.75 7.82 -2.91 -0.02 2.73 16 9 C 0.01 0.35 1.37 -52.93 -0.07 0.28 16 10 C 0.18 7.31 4.73 86.38 0.41 7.72 16 11 N -0.71 -25.38 5.64 -339.34 -1.91 -27.29 16 12 C 0.24 7.70 6.65 38.28 0.25 7.95 16 13 C -0.21 -5.85 9.88 22.37 0.22 -5.63 16 14 C -0.02 -0.57 9.69 22.45 0.22 -0.36 16 15 C -0.12 -3.21 5.88 -20.02 -0.12 -3.33 16 16 C 0.23 6.19 7.93 137.35 1.09 7.28 16 17 N -0.30 -8.11 12.23 -52.19 -0.64 -8.74 16 18 N -0.06 -1.33 13.47 37.02 0.50 -0.83 16 19 N -0.20 -3.36 7.90 37.02 0.29 -3.06 16 20 H 0.49 2.82 8.96 -347.54 -3.12 -0.29 16 21 N -0.31 -7.05 12.08 -52.14 -0.63 -7.68 16 22 C -0.02 -0.62 9.69 22.45 0.22 -0.41 16 23 C -0.22 -6.90 9.29 22.37 0.21 -6.69 16 24 C -0.18 -7.04 9.96 30.62 0.30 -6.73 16 25 C -0.16 -6.84 9.43 30.62 0.29 -6.55 16 26 H 0.26 13.72 8.32 -92.71 -0.77 12.95 16 27 H 0.04 1.73 7.91 -2.38 -0.02 1.71 16 28 H 0.04 1.64 7.93 -2.39 -0.02 1.62 16 29 H 0.40 13.96 8.40 -92.70 -0.78 13.18 16 30 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.14 3.35 7.88 -2.91 -0.02 3.33 16 32 H 0.14 3.40 7.88 -2.91 -0.02 3.38 16 33 H 0.12 3.91 6.71 -2.91 -0.02 3.89 16 34 H 0.09 3.05 8.14 -2.39 -0.02 3.04 16 35 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -59.99 326.08 0.84 -59.16 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -2.77 Total: 23.16 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 3.70 Total: -29.69 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -2.11 Total: -96.53 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -59.99 0.84 -59.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592675954.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.875 kcal (2) G-P(sol) polarization free energy of solvation -59.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds