Wall clock time and date at job start Tue Mar 31 2020 05:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00186 * 2 1 4 4 H 1.48502 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47160 * 299.99954 * 3 2 1 6 6 H 1.48503 * 109.46793 * 59.99831 * 3 2 1 7 7 C 1.38816 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99546 * 200.30477 * 7 2 1 9 9 N 1.36934 * 120.00263 * 20.03307 * 7 2 1 10 10 C 1.46506 * 119.99828 * 35.34558 * 9 7 2 11 11 C 1.50699 * 109.46721 * 84.05922 * 10 9 7 12 12 C 1.38056 * 120.05744 * 265.80798 * 11 10 9 13 13 C 1.38290 * 120.11380 * 179.77281 * 12 11 10 14 14 C 1.38341 * 120.23928 * 0.51386 * 13 12 11 15 15 C 1.38009 * 120.11477 * 359.74666 * 14 13 12 16 16 C 1.39276 * 120.06190 * 86.09568 * 11 10 9 17 17 C 1.48469 * 120.11349 * 359.97438 * 16 11 10 18 18 N 1.34042 * 126.67382 * 6.99956 * 17 16 11 19 19 N 1.28991 * 107.26501 * 179.83684 * 18 17 16 20 20 N 1.28724 * 108.94654 * 0.43547 * 19 18 17 21 21 H 0.96996 * 125.34575 * 179.74315 * 20 19 18 22 22 N 1.28876 * 109.31610 * 359.72695 * 20 19 18 23 23 C 1.46493 * 120.00260 * 215.34513 * 9 7 2 24 24 C 1.53009 * 117.49621 * 4.00699 * 23 9 7 25 25 C 1.53000 * 60.00063 * 252.50713 * 24 23 9 26 26 H 0.96996 * 119.99524 * 4.98247 * 1 2 3 27 27 H 1.08997 * 109.46732 * 204.05780 * 10 9 7 28 28 H 1.08993 * 109.46719 * 324.06120 * 10 9 7 29 29 H 1.07996 * 119.93784 * 0.02562 * 12 11 10 30 30 H 1.07994 * 119.88309 * 180.27620 * 13 12 11 31 31 H 1.07995 * 119.94733 * 179.76564 * 14 13 12 32 32 H 1.07997 * 120.05665 * 179.97438 * 15 14 13 33 33 H 1.09002 * 115.55300 * 149.71351 * 23 9 7 34 34 H 1.08994 * 117.49739 * 0.02562 * 24 23 9 35 35 H 1.08999 * 117.49361 * 145.01893 * 24 23 9 36 36 H 1.08998 * 117.50119 * 252.51055 * 25 24 23 37 37 H 1.08999 * 117.51165 * 107.47731 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0399 -1.2311 0.3251 9 7 1.3876 -2.3524 -0.4052 10 6 0.4032 -2.3092 -1.4894 11 6 1.1145 -2.3734 -2.8164 12 6 1.4367 -1.2095 -3.4853 13 6 2.0936 -1.2669 -4.7008 14 6 2.4219 -2.4898 -5.2583 15 6 2.0996 -3.6595 -4.6005 16 6 1.4426 -3.6072 -3.3731 17 6 1.0934 -4.8623 -2.6610 18 7 0.3533 -4.9724 -1.5488 19 7 0.2842 -6.2271 -1.2576 20 7 0.9531 -6.8962 -2.1305 21 1 1.0617 -7.8600 -2.1360 22 7 1.4557 -6.0845 -2.9962 23 6 1.7059 -3.6261 0.2448 24 6 2.6710 -3.5917 1.4317 25 6 3.1303 -4.1626 0.0885 26 1 -0.4849 0.8369 -0.0730 27 1 -0.2744 -3.1581 -1.3988 28 1 -0.1658 -1.3817 -1.4266 29 1 1.1790 -0.2524 -3.0564 30 1 2.3478 -0.3540 -5.2187 31 1 2.9315 -2.5292 -6.2096 32 1 2.3560 -4.6136 -5.0367 33 1 0.8947 -4.3535 0.2763 34 1 3.0687 -2.6214 1.7290 35 1 2.4947 -4.2966 2.2442 36 1 3.2562 -5.2429 0.0174 37 1 3.8303 -3.5679 -0.4984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:53 Heat of formation + Delta-G solvation = 202.509256 kcal Electronic energy + Delta-G solvation = -23129.974984 eV Core-core repulsion = 19912.120421 eV Total energy + Delta-G solvation = -3217.854563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.25962 -40.23573 -38.53769 -35.48757 -35.26189 -34.40462 -33.12775 -31.36477 -31.11917 -27.54140 -25.66896 -25.52071 -24.71723 -23.06193 -22.59999 -21.85563 -21.60063 -19.91092 -18.33204 -17.98509 -17.51588 -17.22549 -16.35314 -16.14109 -15.93551 -15.43588 -15.02816 -14.75869 -14.44254 -14.04200 -13.87488 -13.45440 -13.21189 -12.99708 -12.71286 -12.70078 -12.38463 -12.32892 -12.21273 -12.09819 -11.99350 -11.74621 -11.71422 -11.43179 -11.10189 -10.74773 -10.35070 -9.59469 -9.33644 -8.49535 -7.68437 -5.39349 -0.07298 0.40346 0.64468 1.44076 1.48507 1.54463 1.57356 1.62784 2.52442 2.90351 2.99480 3.18288 3.41056 3.46648 3.69484 4.16573 4.23552 4.28832 4.34343 4.43777 4.48886 4.59176 4.61808 4.66485 4.78040 4.81750 5.00206 5.12226 5.19075 5.35278 5.39370 5.45347 5.58179 5.65857 5.69740 5.80094 5.90292 6.02436 6.18510 6.51190 7.20861 7.35256 7.91171 8.43835 9.18179 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.008209 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.134473 B = 3410.136345 C = 4525.880170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.027 4.027 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.293 1.293 7 C -0.250 4.250 8 H 0.047 0.953 9 N -0.546 5.546 10 C 0.159 3.841 11 C -0.050 4.050 12 C -0.126 4.126 13 C -0.101 4.101 14 C -0.130 4.130 15 C -0.085 4.085 16 C -0.042 4.042 17 C 0.223 3.777 18 N -0.276 5.276 19 N -0.072 5.072 20 N -0.204 5.204 21 H 0.491 0.509 22 N -0.297 5.297 23 C 0.123 3.877 24 C -0.195 4.195 25 C -0.209 4.209 26 H 0.252 0.748 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.145 0.855 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 -11.475 -10.020 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.224 4.224 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.221 1.221 7 C -0.381 4.381 8 H 0.065 0.935 9 N -0.262 5.262 10 C 0.034 3.966 11 C -0.055 4.055 12 C -0.145 4.145 13 C -0.120 4.120 14 C -0.148 4.148 15 C -0.105 4.105 16 C -0.046 4.046 17 C -0.056 4.056 18 N -0.147 5.147 19 N -0.066 5.066 20 N -0.054 5.054 21 H 0.349 0.651 22 N -0.150 5.150 23 C 0.014 3.986 24 C -0.234 4.234 25 C -0.250 4.250 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.163 0.837 31 H 0.179 0.821 32 H 0.163 0.837 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.862 -11.718 -9.421 15.305 hybrid contribution 0.739 0.817 0.133 1.110 sum 3.601 -10.901 -9.288 14.767 Atomic orbital electron populations 1.70114 1.06384 1.26126 1.52463 1.25570 0.95466 1.00563 1.00851 0.85595 0.78721 0.81258 0.77222 1.20109 1.20647 1.22063 1.19073 0.93107 0.86655 1.39246 0.93488 1.43307 1.47094 1.01774 1.33988 1.20312 0.91043 1.03199 0.82084 1.21014 0.96314 0.91829 0.96311 1.21035 1.00256 0.97348 0.95897 1.21562 0.96416 0.99503 0.94527 1.21296 1.01276 0.90957 1.01317 1.21296 0.96339 1.00168 0.92702 1.17396 1.04565 0.86931 0.95751 1.23641 0.97007 0.92310 0.92610 1.76358 1.18663 1.06975 1.12720 1.78872 1.13285 0.99245 1.15215 1.47653 1.30369 1.13294 1.14087 0.65109 1.74790 1.21830 1.00546 1.17788 1.21573 0.90412 0.90371 0.96264 1.23091 1.06731 1.01716 0.91834 1.23135 1.02882 0.98229 1.00769 0.93857 0.91137 0.90426 0.87997 0.83703 0.82120 0.83710 0.87181 0.90431 0.88332 0.90186 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.01 11.15 21.65 0.24 -51.77 16 2 C -0.03 -1.48 5.06 84.86 0.43 -1.05 16 3 Si 0.94 44.42 29.60 68.60 2.03 46.45 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 7 C -0.25 -13.77 8.42 84.03 0.71 -13.06 16 8 H 0.05 2.67 6.83 -2.91 -0.02 2.65 16 9 N -0.55 -27.84 2.78 -682.32 -1.90 -29.74 16 10 C 0.16 7.79 5.00 85.63 0.43 8.21 16 11 C -0.05 -2.11 5.45 -19.66 -0.11 -2.22 16 12 C -0.13 -5.00 9.67 22.24 0.22 -4.79 16 13 C -0.10 -3.06 10.04 22.31 0.22 -2.84 16 14 C -0.13 -3.38 10.04 22.24 0.22 -3.16 16 15 C -0.09 -2.49 9.70 22.48 0.22 -2.27 16 16 C -0.04 -1.56 5.88 -20.04 -0.12 -1.67 16 17 C 0.22 7.81 7.52 137.38 1.03 8.84 16 18 N -0.28 -10.22 5.53 -52.18 -0.29 -10.51 16 19 N -0.07 -2.14 13.29 37.02 0.49 -1.64 16 20 N -0.20 -4.53 7.90 37.02 0.29 -4.23 16 21 H 0.49 5.30 8.96 -347.54 -3.12 2.18 16 22 N -0.30 -8.25 12.11 -52.13 -0.63 -8.88 16 23 C 0.12 5.57 4.95 45.00 0.22 5.79 16 24 C -0.20 -8.26 9.77 30.60 0.30 -7.96 16 25 C -0.21 -8.57 10.35 30.60 0.32 -8.25 16 26 H 0.25 13.90 8.32 -92.71 -0.77 13.13 16 27 H 0.07 3.42 5.23 -2.39 -0.01 3.41 16 28 H 0.08 4.29 5.19 -2.39 -0.01 4.28 16 29 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 30 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 32 H 0.15 3.49 7.90 -2.91 -0.02 3.47 16 33 H 0.11 4.96 5.73 -2.39 -0.01 4.95 16 34 H 0.08 3.60 6.54 -2.39 -0.02 3.58 16 35 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 36 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -66.95 308.84 2.34 -64.60 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -1.99 Total: 20.14 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 4.09 Total: -24.42 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -1.79 Total: -106.77 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -66.95 2.34 -64.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 267.114 kcal (2) G-P(sol) polarization free energy of solvation -66.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds