Wall clock time and date at job start Tue Mar 31 2020 05:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99781 * 2 1 4 4 H 1.48498 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47573 * 300.00522 * 3 2 1 6 6 H 1.48501 * 109.47045 * 60.00802 * 3 2 1 7 7 C 1.38816 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00226 * 158.11035 * 7 2 1 9 9 N 1.36943 * 119.99739 * 338.10647 * 7 2 1 10 10 C 1.46497 * 119.99728 * 324.73362 * 9 7 2 11 11 C 1.50700 * 109.47157 * 269.99960 * 10 9 7 12 12 C 1.38311 * 119.88136 * 90.00718 * 11 10 9 13 13 C 1.38033 * 120.11448 * 180.02562 * 12 11 10 14 14 C 1.39299 * 119.88353 * 359.97438 * 13 12 11 15 15 C 1.48461 * 120.11371 * 179.97438 * 14 13 12 16 16 N 1.34045 * 126.67820 * 0.02562 * 15 14 13 17 17 N 1.28983 * 107.27080 * 179.97438 * 16 15 14 18 18 N 1.28738 * 108.94069 * 359.97438 * 17 16 15 19 19 H 0.96999 * 125.33943 * 180.02562 * 18 17 16 20 20 N 1.28866 * 109.31681 * 359.97438 * 18 17 16 21 21 C 1.39298 * 119.76573 * 0.25128 * 14 13 12 22 22 C 1.38030 * 119.87940 * 359.53733 * 21 14 13 23 23 C 1.46495 * 119.99793 * 144.73467 * 9 7 2 24 24 C 1.53005 * 117.49935 * 3.23883 * 23 9 7 25 25 C 1.52995 * 117.50023 * 294.58126 * 23 9 7 26 26 H 0.96990 * 120.00129 * 355.90279 * 1 2 3 27 27 H 1.08998 * 109.46659 * 150.00156 * 10 9 7 28 28 H 1.08993 * 109.47394 * 30.00269 * 10 9 7 29 29 H 1.07997 * 119.94172 * 359.97438 * 12 11 10 30 30 H 1.08008 * 120.05644 * 179.97438 * 13 12 11 31 31 H 1.07995 * 120.06144 * 179.74842 * 21 14 13 32 32 H 1.08005 * 119.94161 * 180.18659 * 22 21 14 33 33 H 1.08996 * 115.55015 * 148.91115 * 23 9 7 34 34 H 1.08996 * 117.49649 * 0.02562 * 24 23 9 35 35 H 1.09005 * 117.49882 * 145.01934 * 24 23 9 36 36 H 1.09002 * 117.50155 * 214.98237 * 25 23 9 37 37 H 1.09003 * 117.49898 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0319 -1.2357 -0.3492 9 7 1.3997 -2.3455 0.4412 10 6 0.4449 -2.2842 1.5506 11 6 1.1769 -2.4723 2.8543 12 6 1.6777 -1.3732 3.5282 13 6 2.3495 -1.5399 4.7224 14 6 2.5220 -2.8179 5.2491 15 6 3.2442 -3.0033 6.5329 16 7 3.7826 -2.0408 7.2949 17 7 4.3145 -2.6161 8.3195 18 7 4.1303 -3.8869 8.2275 19 1 4.4336 -4.5459 8.8715 20 7 3.4789 -4.1461 7.1462 21 6 2.0197 -3.9219 4.5640 22 6 1.3458 -3.7435 3.3727 23 6 1.7013 -3.6299 -0.1957 24 6 2.7627 -3.6400 -1.2977 25 6 1.2843 -3.8091 -1.6567 26 1 -0.4850 0.8378 0.0600 27 1 -0.2984 -3.0730 1.4341 28 1 -0.0517 -1.3140 1.5494 29 1 1.5437 -0.3828 3.1188 30 1 2.7405 -0.6810 5.2476 31 1 2.1544 -4.9152 4.9658 32 1 0.9532 -4.5985 2.8421 33 1 1.6430 -4.5024 0.4550 34 1 3.2367 -2.6912 -1.5485 35 1 3.4024 -4.5194 -1.3722 36 1 0.9520 -4.7997 -1.9674 37 1 0.7852 -2.9716 -2.1441 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592677451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:01 Heat of formation + Delta-G solvation = 198.041702 kcal Electronic energy + Delta-G solvation = -21569.102461 eV Core-core repulsion = 18351.054170 eV Total energy + Delta-G solvation = -3218.048290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.38254 -38.86071 -36.93070 -34.45725 -33.92562 -33.12591 -31.33471 -30.46765 -29.52991 -26.12718 -24.62248 -24.19895 -22.75603 -21.88144 -21.40270 -20.58783 -19.73755 -19.11681 -17.08281 -16.69127 -16.19233 -15.51425 -14.78644 -14.70292 -14.45402 -13.96642 -13.70410 -13.12677 -12.99277 -12.92335 -12.39622 -12.27858 -11.89794 -11.53865 -11.32024 -11.18935 -11.15639 -10.83115 -10.68777 -10.65016 -10.60650 -10.28989 -10.10431 -9.85120 -9.67401 -9.33085 -8.55028 -8.44317 -8.00637 -6.66354 -5.88028 -3.46137 0.94810 1.35804 1.92745 2.25679 2.64120 3.30755 3.41383 3.44452 3.85213 4.27221 4.32222 4.43977 4.90412 5.25082 5.31463 5.35129 5.41398 5.45886 5.53857 5.79483 5.88924 5.99460 6.05605 6.09633 6.22369 6.34365 6.42429 6.46523 6.47917 6.60272 6.67920 6.84538 6.96862 7.01770 7.19361 7.29039 7.44921 7.60198 7.74435 8.20512 8.39177 9.05393 9.68144 10.23443 11.08298 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.004642 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.257321 B = 6030.334643 C = 6959.492985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.012 3.988 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.542 5.542 10 C 0.168 3.832 11 C -0.044 4.044 12 C -0.102 4.102 13 C -0.077 4.077 14 C -0.054 4.054 15 C 0.238 3.762 16 N -0.272 5.272 17 N -0.058 5.058 18 N -0.235 5.235 19 H 0.472 0.528 20 N -0.305 5.305 21 C -0.082 4.082 22 C -0.127 4.127 23 C 0.121 3.879 24 C -0.196 4.196 25 C -0.219 4.219 26 H 0.256 0.744 27 H 0.040 0.960 28 H 0.112 0.888 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 -8.574 11.426 14.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.188 4.188 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.257 5.257 10 C 0.042 3.958 11 C -0.048 4.048 12 C -0.121 4.121 13 C -0.097 4.097 14 C -0.058 4.058 15 C -0.041 4.041 16 N -0.146 5.146 17 N -0.053 5.053 18 N -0.080 5.080 19 H 0.325 0.675 20 N -0.156 5.156 21 C -0.102 4.102 22 C -0.146 4.146 23 C 0.013 3.987 24 C -0.234 4.234 25 C -0.260 4.260 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.129 0.871 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.013 -8.194 11.897 14.993 hybrid contribution 0.578 0.231 0.045 0.624 sum 4.591 -7.963 11.943 15.070 Atomic orbital electron populations 1.70037 1.05484 1.26179 1.50490 1.25092 0.94941 0.98682 1.00092 0.86417 0.80040 0.84009 0.77594 1.19915 1.21578 1.21051 1.19119 0.94500 0.85491 1.39051 0.91549 1.43313 1.49448 1.01755 1.31204 1.20179 0.90121 1.04247 0.81205 1.21462 0.95135 0.92070 0.96182 1.21074 0.97596 0.99893 0.93576 1.21124 0.97316 0.95404 0.95853 1.17083 1.03583 0.95006 0.90107 1.23902 0.98814 0.83838 0.97537 1.76089 1.12164 1.26271 1.00043 1.78862 1.16940 0.91367 1.18128 1.47684 1.35959 1.07614 1.16763 0.67464 1.74936 1.15512 1.26424 0.98726 1.20972 0.96978 0.97232 0.95049 1.20977 1.00652 0.97367 0.95617 1.21192 1.00521 0.89940 0.87087 1.23041 0.91945 1.01904 1.06525 1.23362 0.97348 1.00722 1.04559 0.93387 0.94152 0.87072 0.85323 0.85637 0.86101 0.86206 0.89497 0.88454 0.90786 0.91178 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.53 11.33 55.49 0.63 -22.90 16 2 C 0.01 0.32 4.97 -17.43 -0.09 0.23 16 3 Si 0.89 20.54 29.61 -169.99 -5.03 15.50 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.25 -6.41 8.62 -15.05 -0.13 -6.54 16 8 H 0.07 1.73 6.56 -52.49 -0.34 1.39 16 9 N -0.54 -12.53 2.76 -167.03 -0.46 -12.99 16 10 C 0.17 3.62 5.45 -5.20 -0.03 3.59 16 11 C -0.04 -0.84 5.47 -104.57 -0.57 -1.42 16 12 C -0.10 -1.94 9.68 -39.63 -0.38 -2.32 16 13 C -0.08 -1.31 9.70 -39.26 -0.38 -1.69 16 14 C -0.05 -0.88 5.88 -104.89 -0.62 -1.49 16 15 C 0.24 3.67 7.94 -156.31 -1.24 2.43 16 16 N -0.27 -4.24 12.23 32.15 0.39 -3.84 16 17 N -0.06 -0.74 13.47 60.35 0.81 0.07 16 18 N -0.23 -2.35 7.90 60.35 0.48 -1.87 16 19 H 0.47 2.19 8.96 -340.37 -3.05 -0.86 16 20 N -0.30 -3.97 12.08 32.17 0.39 -3.58 16 21 C -0.08 -1.27 9.70 -39.26 -0.38 -1.65 16 22 C -0.13 -2.10 9.68 -39.63 -0.38 -2.49 16 23 C 0.12 2.48 6.56 -67.93 -0.45 2.03 16 24 C -0.20 -3.76 9.80 -26.69 -0.26 -4.02 16 25 C -0.22 -4.29 10.36 -26.70 -0.28 -4.57 16 26 H 0.26 6.62 8.32 -40.82 -0.34 6.29 16 27 H 0.04 0.82 8.01 -51.93 -0.42 0.41 16 28 H 0.11 2.70 5.30 -51.93 -0.28 2.43 16 29 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 30 H 0.13 2.01 7.89 -52.48 -0.41 1.59 16 31 H 0.12 1.63 7.88 -52.49 -0.41 1.22 16 32 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 34 H 0.10 2.05 6.37 -51.93 -0.33 1.72 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 322.50 15.07 4.86 4.86 Total: -1.00 -28.97 322.50 -10.04 -39.01 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.92 Total: 3.65 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -5.19 Total: -17.90 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 2.24 Total: -45.12 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.97 -10.04 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.049 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds