Wall clock time and date at job start Tue Mar 31 2020 05:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99781 * 2 1 4 4 H 1.48498 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47573 * 300.00522 * 3 2 1 6 6 H 1.48501 * 109.47045 * 60.00802 * 3 2 1 7 7 C 1.38816 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00226 * 158.11035 * 7 2 1 9 9 N 1.36943 * 119.99739 * 338.10647 * 7 2 1 10 10 C 1.46497 * 119.99728 * 324.73362 * 9 7 2 11 11 C 1.50700 * 109.47157 * 269.99960 * 10 9 7 12 12 C 1.38311 * 119.88136 * 90.00718 * 11 10 9 13 13 C 1.38033 * 120.11448 * 180.02562 * 12 11 10 14 14 C 1.39299 * 119.88353 * 359.97438 * 13 12 11 15 15 C 1.48461 * 120.11371 * 179.97438 * 14 13 12 16 16 N 1.34045 * 126.67820 * 0.02562 * 15 14 13 17 17 N 1.28983 * 107.27080 * 179.97438 * 16 15 14 18 18 N 1.28738 * 108.94069 * 359.97438 * 17 16 15 19 19 H 0.96999 * 125.33943 * 180.02562 * 18 17 16 20 20 N 1.28866 * 109.31681 * 359.97438 * 18 17 16 21 21 C 1.39298 * 119.76573 * 0.25128 * 14 13 12 22 22 C 1.38030 * 119.87940 * 359.53733 * 21 14 13 23 23 C 1.46495 * 119.99793 * 144.73467 * 9 7 2 24 24 C 1.53005 * 117.49935 * 3.23883 * 23 9 7 25 25 C 1.52995 * 117.50023 * 294.58126 * 23 9 7 26 26 H 0.96990 * 120.00129 * 355.90279 * 1 2 3 27 27 H 1.08998 * 109.46659 * 150.00156 * 10 9 7 28 28 H 1.08993 * 109.47394 * 30.00269 * 10 9 7 29 29 H 1.07997 * 119.94172 * 359.97438 * 12 11 10 30 30 H 1.08008 * 120.05644 * 179.97438 * 13 12 11 31 31 H 1.07995 * 120.06144 * 179.74842 * 21 14 13 32 32 H 1.08005 * 119.94161 * 180.18659 * 22 21 14 33 33 H 1.08996 * 115.55015 * 148.91115 * 23 9 7 34 34 H 1.08996 * 117.49649 * 0.02562 * 24 23 9 35 35 H 1.09005 * 117.49882 * 145.01934 * 24 23 9 36 36 H 1.09002 * 117.50155 * 214.98237 * 25 23 9 37 37 H 1.09003 * 117.49898 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0319 -1.2357 -0.3492 9 7 1.3997 -2.3455 0.4412 10 6 0.4449 -2.2842 1.5506 11 6 1.1769 -2.4723 2.8543 12 6 1.6777 -1.3732 3.5282 13 6 2.3495 -1.5399 4.7224 14 6 2.5220 -2.8179 5.2491 15 6 3.2442 -3.0033 6.5329 16 7 3.7826 -2.0408 7.2949 17 7 4.3145 -2.6161 8.3195 18 7 4.1303 -3.8869 8.2275 19 1 4.4336 -4.5459 8.8715 20 7 3.4789 -4.1461 7.1462 21 6 2.0197 -3.9219 4.5640 22 6 1.3458 -3.7435 3.3727 23 6 1.7013 -3.6299 -0.1957 24 6 2.7627 -3.6400 -1.2977 25 6 1.2843 -3.8091 -1.6567 26 1 -0.4850 0.8378 0.0600 27 1 -0.2984 -3.0730 1.4341 28 1 -0.0517 -1.3140 1.5494 29 1 1.5437 -0.3828 3.1188 30 1 2.7405 -0.6810 5.2476 31 1 2.1544 -4.9152 4.9658 32 1 0.9532 -4.5985 2.8421 33 1 1.6430 -4.5024 0.4550 34 1 3.2367 -2.6912 -1.5485 35 1 3.4024 -4.5194 -1.3722 36 1 0.9520 -4.7997 -1.9674 37 1 0.7852 -2.9716 -2.1441 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:59 Heat of formation + Delta-G solvation = 181.916867 kcal Electronic energy + Delta-G solvation = -21569.801686 eV Core-core repulsion = 18351.054170 eV Total energy + Delta-G solvation = -3218.747516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -45.42440 -40.24462 -38.54038 -35.73980 -35.23449 -34.50651 -32.93794 -31.80501 -31.07750 -27.74975 -25.83286 -25.67723 -24.09857 -23.20885 -22.95165 -21.95068 -21.41710 -20.13456 -18.37660 -18.10589 -17.57717 -17.21681 -16.45098 -16.09673 -15.96675 -15.49227 -15.05751 -14.61349 -14.45812 -14.23927 -13.86243 -13.55711 -13.38263 -13.14297 -12.94574 -12.64746 -12.41504 -12.36479 -12.24274 -12.16875 -11.88866 -11.81061 -11.73560 -11.56458 -11.32943 -10.87734 -10.45361 -9.77523 -9.35407 -8.51887 -7.79295 -5.41659 -0.19327 0.22790 0.59298 1.39222 1.44047 1.46492 1.49579 1.57033 2.50595 2.72421 2.94069 3.18950 3.21647 3.45869 3.69442 4.09862 4.13543 4.19965 4.32957 4.37914 4.47100 4.53799 4.58909 4.67348 4.68439 4.94308 4.98256 5.07813 5.10071 5.25210 5.39994 5.53006 5.55025 5.58079 5.65303 5.67676 5.77739 5.98686 6.10999 6.48856 7.15018 7.16484 7.86150 8.35463 9.12368 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.004642 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.257321 B = 6030.334643 C = 6959.492985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.026 4.026 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.251 4.251 8 H 0.055 0.945 9 N -0.558 5.558 10 C 0.173 3.827 11 C -0.060 4.060 12 C -0.117 4.117 13 C -0.080 4.080 14 C -0.049 4.049 15 C 0.220 3.780 16 N -0.300 5.300 17 N -0.058 5.058 18 N -0.200 5.200 19 H 0.494 0.506 20 N -0.294 5.294 21 C -0.072 4.072 22 C -0.119 4.119 23 C 0.105 3.895 24 C -0.186 4.186 25 C -0.214 4.214 26 H 0.252 0.748 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.130 0.870 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 -11.276 13.107 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.224 4.224 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.073 0.927 9 N -0.274 5.274 10 C 0.048 3.952 11 C -0.064 4.064 12 C -0.136 4.136 13 C -0.100 4.100 14 C -0.052 4.052 15 C -0.060 4.060 16 N -0.172 5.172 17 N -0.053 5.053 18 N -0.051 5.051 19 H 0.354 0.646 20 N -0.146 5.146 21 C -0.092 4.092 22 C -0.138 4.138 23 C -0.003 4.003 24 C -0.225 4.225 25 C -0.255 4.255 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.252 -10.916 13.609 18.220 hybrid contribution 0.264 0.927 -0.323 1.017 sum 5.516 -9.989 13.287 17.514 Atomic orbital electron populations 1.70131 1.06397 1.26226 1.52438 1.25552 0.95403 1.00668 1.00774 0.85683 0.79108 0.81511 0.77075 1.19758 1.22127 1.21043 1.19155 0.94020 0.86703 1.38226 0.92714 1.43473 1.49400 1.02136 1.32376 1.19967 0.90204 1.02702 0.82320 1.21189 0.96088 0.93406 0.95723 1.20929 0.98991 0.99025 0.94692 1.21110 0.97272 0.96430 0.95225 1.17218 1.02757 0.94749 0.90506 1.23728 0.99959 0.84559 0.97734 1.76085 1.13090 1.27220 1.00831 1.78819 1.16872 0.92178 1.17460 1.47757 1.33760 1.07509 1.16068 0.64642 1.74879 1.15196 1.25461 0.99111 1.21214 0.95639 0.98172 0.94190 1.21131 1.00043 0.96696 0.95890 1.21521 1.01401 0.89648 0.87736 1.23037 0.91966 1.02108 1.05348 1.23275 0.97522 1.00992 1.03715 0.93855 0.93404 0.90299 0.87726 0.85176 0.83303 0.83950 0.86676 0.91000 0.87315 0.87894 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.64 11.33 21.65 0.25 -50.40 16 2 C -0.03 -1.40 4.97 84.86 0.42 -0.97 16 3 Si 0.94 43.71 29.61 68.60 2.03 45.74 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 7 C -0.25 -13.10 8.62 84.03 0.72 -12.37 16 8 H 0.06 2.94 6.56 -2.91 -0.02 2.92 16 9 N -0.56 -26.04 2.76 -682.37 -1.88 -27.93 16 10 C 0.17 7.61 5.45 85.63 0.47 8.08 16 11 C -0.06 -2.29 5.47 -19.83 -0.11 -2.40 16 12 C -0.12 -4.54 9.68 22.24 0.22 -4.33 16 13 C -0.08 -2.73 9.70 22.48 0.22 -2.51 16 14 C -0.05 -1.49 5.88 -20.04 -0.12 -1.61 16 15 C 0.22 6.23 7.94 137.38 1.09 7.32 16 16 N -0.30 -8.78 12.23 -52.18 -0.64 -9.42 16 17 N -0.06 -1.35 13.47 37.02 0.50 -0.85 16 18 N -0.20 -3.29 7.90 37.02 0.29 -3.00 16 19 H 0.49 2.62 8.96 -347.54 -3.12 -0.50 16 20 N -0.29 -6.63 12.08 -52.13 -0.63 -7.26 16 21 C -0.07 -2.01 9.70 22.48 0.22 -1.79 16 22 C -0.12 -3.65 9.68 22.24 0.22 -3.44 16 23 C 0.10 4.13 6.56 44.99 0.30 4.43 16 24 C -0.19 -6.88 9.80 30.62 0.30 -6.58 16 25 C -0.21 -8.15 10.36 30.62 0.32 -7.84 16 26 H 0.25 13.65 8.32 -92.72 -0.77 12.88 16 27 H 0.05 1.95 8.01 -2.39 -0.02 1.93 16 28 H 0.08 4.03 5.30 -2.39 -0.01 4.01 16 29 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 30 H 0.13 4.20 7.89 -2.91 -0.02 4.18 16 31 H 0.15 3.34 7.88 -2.91 -0.02 3.32 16 32 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 33 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 34 H 0.07 3.03 6.37 -2.39 -0.02 3.01 16 35 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 36 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -63.95 322.50 2.17 -61.78 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -2.00 Total: 15.36 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: 4.26 Total: -24.02 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -2.12 Total: -98.85 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -63.95 2.17 -61.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.695 kcal (2) G-P(sol) polarization free energy of solvation -63.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds