Wall clock time and date at job start Tue Mar 31 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47424 * 2 1 4 4 C 1.50706 * 109.47074 * 239.99375 * 2 1 3 5 5 O 1.21293 * 120.00104 * 259.37668 * 4 2 1 6 6 N 1.34771 * 119.99590 * 79.37597 * 4 2 1 7 7 C 1.37099 * 120.00249 * 4.29474 * 6 4 2 8 8 H 1.07999 * 120.00066 * 318.90192 * 7 6 4 9 9 C 1.38946 * 120.00109 * 138.90411 * 7 6 4 10 10 N 1.31415 * 120.00056 * 160.09198 * 9 7 6 11 11 Si 1.86793 * 120.00334 * 340.09697 * 9 7 6 12 12 H 1.48504 * 109.47650 * 93.79100 * 11 9 7 13 13 H 1.48504 * 109.47605 * 213.79625 * 11 9 7 14 14 H 1.48504 * 109.46940 * 333.79466 * 11 9 7 15 15 C 1.46500 * 120.00062 * 184.28890 * 6 4 2 16 16 C 1.53001 * 109.47121 * 84.08493 * 15 6 4 17 17 C 1.50699 * 109.46852 * 180.02562 * 16 15 6 18 18 O 1.20824 * 120.00604 * 0.02562 * 17 16 15 19 19 O 1.34226 * 119.99486 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.46678 * 119.99817 * 2 1 3 21 21 C 1.53782 * 113.61717 * 299.99783 * 20 2 1 22 22 C 1.53778 * 87.08311 * 220.02086 * 21 20 2 23 23 C 1.53786 * 87.17309 * 25.39126 * 22 21 20 24 24 H 1.09007 * 109.47469 * 300.00640 * 1 2 3 25 25 H 1.09003 * 109.47066 * 59.99765 * 1 2 3 26 26 H 1.08996 * 109.48005 * 180.02562 * 1 2 3 27 27 H 0.96698 * 113.99633 * 180.02562 * 3 2 1 28 28 H 0.96999 * 120.00666 * 179.97438 * 10 9 7 29 29 H 1.08995 * 109.47513 * 204.09076 * 15 6 4 30 30 H 1.09009 * 109.46822 * 324.08508 * 15 6 4 31 31 H 1.08999 * 109.46940 * 300.00670 * 16 15 6 32 32 H 1.08997 * 109.46837 * 60.00326 * 16 15 6 33 33 H 0.96700 * 116.99968 * 180.02562 * 19 17 16 34 34 H 1.08998 * 112.90703 * 71.25092 * 20 2 1 35 35 H 1.08999 * 113.61426 * 105.46712 * 21 20 2 36 36 H 1.09007 * 113.61174 * 334.56708 * 21 20 2 37 37 H 1.08998 * 113.61584 * 139.97764 * 22 21 20 38 38 H 1.08998 * 113.61417 * 270.80330 * 22 21 20 39 39 H 1.08999 * 113.61903 * 89.15788 * 23 22 21 40 40 H 1.09002 * 113.61030 * 220.06236 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0323 -0.7106 -1.2304 5 8 2.4170 -1.8583 -1.1534 6 7 2.0540 -0.0707 -2.4163 7 6 1.7028 1.2526 -2.4878 8 1 0.8617 1.6196 -1.9184 9 6 2.4289 2.1217 -3.2929 10 7 1.8972 3.2602 -3.6775 11 14 4.1608 1.6716 -3.8287 12 1 4.1116 1.0072 -5.1559 13 1 4.9860 2.9028 -3.9217 14 1 4.7620 0.7468 -2.8343 15 6 2.4531 -0.7891 -3.6291 16 6 1.2464 -1.5378 -4.1987 17 6 1.6571 -2.2773 -5.4459 18 8 2.7979 -2.2127 -5.8387 19 8 0.7555 -3.0079 -6.1204 20 6 2.0399 -0.7212 1.2493 21 6 1.5810 -0.0722 2.5658 22 6 2.9920 -0.3572 3.1067 23 6 3.4747 -0.3292 1.6468 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 2.9703 1.4235 -0.0004 28 1 2.4042 3.8671 -4.2392 29 1 2.8213 -0.0778 -4.3683 30 1 3.2415 -1.5017 -3.3865 31 1 0.8782 -2.2492 -3.4594 32 1 0.4582 -0.8252 -4.4413 33 1 1.0659 -3.4647 -6.9142 34 1 1.8770 -1.7984 1.2135 35 1 0.7964 -0.6298 3.0772 36 1 1.3552 0.9902 2.4734 37 1 3.3974 0.4504 3.7161 38 1 3.0891 -1.3343 3.5800 39 1 3.7675 0.6627 1.3027 40 1 4.2167 -1.0941 1.4176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593374962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:31 Heat of formation + Delta-G solvation = -144.888804 kcal Electronic energy + Delta-G solvation = -24365.672527 eV Core-core repulsion = 20760.859232 eV Total energy + Delta-G solvation = -3604.813295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.21507 -39.84328 -38.02975 -35.98074 -35.28185 -34.98287 -32.22023 -31.02451 -30.37336 -25.80207 -25.14961 -24.92225 -24.76006 -21.96839 -20.77637 -19.22088 -18.71969 -17.96782 -17.53897 -16.80133 -16.34548 -15.93468 -15.51475 -15.03060 -14.77695 -14.45534 -14.15986 -13.33480 -13.26760 -13.03357 -12.71221 -12.62185 -12.28922 -12.06492 -11.95489 -11.88811 -11.63870 -11.41711 -11.32813 -11.15050 -10.99713 -10.82341 -10.59065 -10.33280 -10.21406 -10.05899 -9.99446 -9.94812 -9.43151 -9.18543 -8.33606 -7.79121 -6.41165 -4.03251 2.48229 3.10105 3.18840 3.26604 3.32359 3.59236 4.15204 4.26745 4.86969 4.89152 4.93638 5.00607 5.06508 5.17669 5.34138 5.48576 5.60072 5.69398 5.83900 5.90324 5.98020 6.02651 6.03249 6.07170 6.11544 6.23584 6.25811 6.31752 6.40106 6.49390 6.57605 6.68336 6.70751 6.85413 7.31513 8.06617 8.12704 8.27553 8.40666 8.95578 9.30280 9.58470 10.68321 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.006867 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.355318 B = 4076.380807 C = 4937.333877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.147 3.853 3 O -0.519 6.519 4 C 0.456 3.544 5 O -0.592 6.592 6 N -0.455 5.455 7 C -0.327 4.327 8 H 0.121 0.879 9 C 0.070 3.930 10 N -0.860 5.860 11 Si 0.859 3.141 12 H -0.272 1.272 13 H -0.288 1.288 14 H -0.264 1.264 15 C 0.110 3.890 16 C -0.122 4.122 17 C 0.484 3.516 18 O -0.519 6.519 19 O -0.520 6.520 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.140 4.140 23 C -0.140 4.140 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.367 0.633 28 H 0.273 0.727 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.403 0.597 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.909 -6.451 5.122 8.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.103 3.897 3 O -0.325 6.325 4 C 0.245 3.755 5 O -0.476 6.476 6 N -0.175 5.175 7 C -0.454 4.454 8 H 0.139 0.861 9 C -0.137 4.137 10 N -0.495 5.495 11 Si 0.686 3.314 12 H -0.198 1.198 13 H -0.214 1.214 14 H -0.188 1.188 15 C -0.014 4.014 16 C -0.161 4.161 17 C 0.327 3.673 18 O -0.408 6.408 19 O -0.332 6.332 20 C -0.139 4.139 21 C -0.167 4.167 22 C -0.177 4.177 23 C -0.177 4.177 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.216 0.784 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.261 0.739 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.161 -6.443 5.291 8.613 hybrid contribution 1.806 -0.494 -1.132 2.188 sum -0.355 -6.937 4.159 8.096 Atomic orbital electron populations 1.21671 0.91972 1.01726 1.03561 1.20800 0.95417 0.83058 0.90455 1.86704 1.26098 1.23249 1.96404 1.21329 0.81411 0.87328 0.85482 1.90546 1.51629 1.19356 1.86115 1.43820 1.59699 1.10730 1.03293 1.19265 1.15461 0.80614 1.30015 0.86135 1.25294 0.97348 0.95185 0.95886 1.69722 1.36610 1.10752 1.32441 0.87210 0.86175 0.78052 0.79929 1.19808 1.21423 1.18793 1.21473 0.94715 0.96292 0.88908 1.21756 1.02748 0.99834 0.91759 1.23719 0.82909 0.75865 0.84829 1.90702 1.21213 1.60797 1.68055 1.84579 1.45274 1.61086 1.42224 1.23075 0.96257 1.00857 0.93727 1.22906 0.96239 1.01636 0.95954 1.22746 0.97381 1.01222 0.96360 1.22949 0.96933 1.01747 0.96097 0.91734 0.90573 0.91991 0.78398 0.91653 0.90111 0.90764 0.87619 0.86757 0.73866 0.88168 0.92058 0.89314 0.91834 0.90724 0.90024 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.46 37.16 0.31 -1.89 16 2 C 0.15 2.70 0.54 -91.77 -0.05 2.65 16 3 O -0.52 -10.03 9.37 -35.23 -0.33 -10.36 16 4 C 0.46 9.85 6.55 -10.99 -0.07 9.78 16 5 O -0.59 -13.79 15.53 5.55 0.09 -13.70 16 6 N -0.46 -10.30 2.13 -114.81 -0.24 -10.54 16 7 C -0.33 -7.96 7.44 -14.93 -0.11 -8.08 16 8 H 0.12 3.12 5.52 -52.49 -0.29 2.83 16 9 C 0.07 1.78 5.28 -17.47 -0.09 1.69 16 10 N -0.86 -23.21 13.96 55.50 0.77 -22.43 16 11 Si 0.86 20.44 25.12 -169.99 -4.27 16.17 16 12 H -0.27 -6.56 6.66 56.52 0.38 -6.18 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 14 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.11 2.41 3.24 -4.04 -0.01 2.40 16 16 C -0.12 -2.24 6.09 -27.88 -0.17 -2.41 16 17 C 0.48 8.38 8.33 36.01 0.30 8.68 16 18 O -0.52 -10.54 16.74 -18.75 -0.31 -10.85 16 19 O -0.52 -6.95 13.42 -39.25 -0.53 -7.48 16 20 C -0.12 -1.92 2.67 -89.71 -0.24 -2.16 16 21 C -0.13 -1.73 6.58 -25.92 -0.17 -1.90 16 22 C -0.14 -1.73 8.08 -25.92 -0.21 -1.94 16 23 C -0.14 -2.08 7.41 -25.82 -0.19 -2.27 16 24 H 0.06 0.96 7.45 -51.93 -0.39 0.58 16 25 H 0.08 1.40 6.56 -51.93 -0.34 1.06 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.37 6.72 6.82 45.56 0.31 7.03 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.08 1.90 3.81 -51.93 -0.20 1.70 16 30 H 0.07 1.70 7.51 -51.92 -0.39 1.31 16 31 H 0.11 1.86 8.14 -51.93 -0.42 1.43 16 32 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 33 H 0.40 3.45 9.10 45.56 0.41 3.87 16 34 H 0.10 1.70 7.64 -51.93 -0.40 1.30 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.23 7.77 -51.93 -0.40 0.83 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.20 5.91 -51.93 -0.31 0.89 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 321.20 15.07 4.84 4.84 Total: -1.00 -30.31 321.20 -4.79 -35.11 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -4.11 Total: 14.71 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.70 Total: 4.54 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.53 Total: -32.98 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -1.08 Total: -42.40 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.27 Total: 16.17 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.31 -4.79 -35.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593374962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.782 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds