Wall clock time and date at job start Tue Mar 31 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47424 * 2 1 4 4 C 1.50706 * 109.47074 * 239.99375 * 2 1 3 5 5 O 1.21293 * 120.00104 * 259.37668 * 4 2 1 6 6 N 1.34771 * 119.99590 * 79.37597 * 4 2 1 7 7 C 1.37099 * 120.00249 * 4.29474 * 6 4 2 8 8 H 1.07999 * 120.00066 * 318.90192 * 7 6 4 9 9 C 1.38946 * 120.00109 * 138.90411 * 7 6 4 10 10 N 1.31415 * 120.00056 * 160.09198 * 9 7 6 11 11 Si 1.86793 * 120.00334 * 340.09697 * 9 7 6 12 12 H 1.48504 * 109.47650 * 93.79100 * 11 9 7 13 13 H 1.48504 * 109.47605 * 213.79625 * 11 9 7 14 14 H 1.48504 * 109.46940 * 333.79466 * 11 9 7 15 15 C 1.46500 * 120.00062 * 184.28890 * 6 4 2 16 16 C 1.53001 * 109.47121 * 84.08493 * 15 6 4 17 17 C 1.50699 * 109.46852 * 180.02562 * 16 15 6 18 18 O 1.20824 * 120.00604 * 0.02562 * 17 16 15 19 19 O 1.34226 * 119.99486 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.46678 * 119.99817 * 2 1 3 21 21 C 1.53782 * 113.61717 * 299.99783 * 20 2 1 22 22 C 1.53778 * 87.08311 * 220.02086 * 21 20 2 23 23 C 1.53786 * 87.17309 * 25.39126 * 22 21 20 24 24 H 1.09007 * 109.47469 * 300.00640 * 1 2 3 25 25 H 1.09003 * 109.47066 * 59.99765 * 1 2 3 26 26 H 1.08996 * 109.48005 * 180.02562 * 1 2 3 27 27 H 0.96698 * 113.99633 * 180.02562 * 3 2 1 28 28 H 0.96999 * 120.00666 * 179.97438 * 10 9 7 29 29 H 1.08995 * 109.47513 * 204.09076 * 15 6 4 30 30 H 1.09009 * 109.46822 * 324.08508 * 15 6 4 31 31 H 1.08999 * 109.46940 * 300.00670 * 16 15 6 32 32 H 1.08997 * 109.46837 * 60.00326 * 16 15 6 33 33 H 0.96700 * 116.99968 * 180.02562 * 19 17 16 34 34 H 1.08998 * 112.90703 * 71.25092 * 20 2 1 35 35 H 1.08999 * 113.61426 * 105.46712 * 21 20 2 36 36 H 1.09007 * 113.61174 * 334.56708 * 21 20 2 37 37 H 1.08998 * 113.61584 * 139.97764 * 22 21 20 38 38 H 1.08998 * 113.61417 * 270.80330 * 22 21 20 39 39 H 1.08999 * 113.61903 * 89.15788 * 23 22 21 40 40 H 1.09002 * 113.61030 * 220.06236 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0323 -0.7106 -1.2304 5 8 2.4170 -1.8583 -1.1534 6 7 2.0540 -0.0707 -2.4163 7 6 1.7028 1.2526 -2.4878 8 1 0.8617 1.6196 -1.9184 9 6 2.4289 2.1217 -3.2929 10 7 1.8972 3.2602 -3.6775 11 14 4.1608 1.6716 -3.8287 12 1 4.1116 1.0072 -5.1559 13 1 4.9860 2.9028 -3.9217 14 1 4.7620 0.7468 -2.8343 15 6 2.4531 -0.7891 -3.6291 16 6 1.2464 -1.5378 -4.1987 17 6 1.6571 -2.2773 -5.4459 18 8 2.7979 -2.2127 -5.8387 19 8 0.7555 -3.0079 -6.1204 20 6 2.0399 -0.7212 1.2493 21 6 1.5810 -0.0722 2.5658 22 6 2.9920 -0.3572 3.1067 23 6 3.4747 -0.3292 1.6468 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 2.9703 1.4235 -0.0004 28 1 2.4042 3.8671 -4.2392 29 1 2.8213 -0.0778 -4.3683 30 1 3.2415 -1.5017 -3.3865 31 1 0.8782 -2.2492 -3.4594 32 1 0.4582 -0.8252 -4.4413 33 1 1.0659 -3.4647 -6.9142 34 1 1.8770 -1.7984 1.2135 35 1 0.7964 -0.6298 3.0772 36 1 1.3552 0.9902 2.4734 37 1 3.3974 0.4504 3.7161 38 1 3.0891 -1.3343 3.5800 39 1 3.7675 0.6627 1.3027 40 1 4.2167 -1.0941 1.4176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593374962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:30 Heat of formation + Delta-G solvation = -166.575153 kcal Electronic energy + Delta-G solvation = -24366.612918 eV Core-core repulsion = 20760.859232 eV Total energy + Delta-G solvation = -3605.753685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.73627 -41.22598 -39.49682 -37.31882 -36.97842 -36.49203 -34.12141 -32.63498 -31.86754 -27.11082 -26.85311 -26.47370 -26.06535 -23.38705 -22.19257 -20.87925 -20.02375 -19.48490 -19.08270 -18.35469 -17.90042 -17.39870 -16.99790 -16.54262 -16.42236 -15.98743 -15.77898 -14.95795 -14.82276 -14.49776 -14.31902 -14.13690 -13.84428 -13.57706 -13.34595 -13.22549 -13.06321 -12.94183 -12.73497 -12.64272 -12.58850 -12.39119 -12.14459 -11.86470 -11.75722 -11.72621 -11.34015 -11.19611 -11.06705 -10.81574 -10.09794 -9.63397 -8.41062 -6.01691 1.09835 1.18338 1.31013 1.37659 1.71274 1.96576 2.20327 2.65693 3.00698 3.50081 3.69643 3.75335 3.79895 3.84010 3.90529 4.01526 4.20719 4.30044 4.38404 4.54503 4.59893 4.63380 4.81710 4.82676 4.88308 4.95038 4.99264 5.05566 5.10304 5.16089 5.32261 5.42139 5.44727 5.51110 5.69393 6.18693 6.36973 6.79382 6.92162 7.05467 7.42630 7.73432 8.71760 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.006867 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.355318 B = 4076.380807 C = 4937.333877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.146 3.854 3 O -0.528 6.528 4 C 0.455 3.545 5 O -0.608 6.608 6 N -0.466 5.466 7 C -0.302 4.302 8 H 0.107 0.893 9 C 0.039 3.961 10 N -0.894 5.894 11 Si 0.901 3.099 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.107 3.893 16 C -0.116 4.116 17 C 0.496 3.504 18 O -0.554 6.554 19 O -0.504 6.504 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.149 4.149 24 H 0.085 0.915 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.369 0.631 28 H 0.275 0.725 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.429 0.571 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 -7.369 6.280 10.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.102 3.898 3 O -0.334 6.334 4 C 0.245 3.755 5 O -0.493 6.493 6 N -0.187 5.187 7 C -0.430 4.430 8 H 0.125 0.875 9 C -0.164 4.164 10 N -0.533 5.533 11 Si 0.729 3.271 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.196 1.196 15 C -0.016 4.016 16 C -0.155 4.155 17 C 0.339 3.661 18 O -0.445 6.445 19 O -0.317 6.317 20 C -0.144 4.144 21 C -0.156 4.156 22 C -0.162 4.162 23 C -0.187 4.187 24 H 0.104 0.896 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.218 0.782 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.290 0.710 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.847 -7.389 6.436 10.205 hybrid contribution 1.976 -0.337 -1.501 2.505 sum -0.871 -7.727 4.935 9.210 Atomic orbital electron populations 1.21666 0.90623 1.02611 1.03605 1.20965 0.96401 0.82558 0.89868 1.86695 1.26414 1.23946 1.96372 1.22032 0.80272 0.87167 0.86061 1.90530 1.52089 1.20184 1.86484 1.43909 1.60319 1.10317 1.04111 1.19061 1.14214 0.81176 1.28514 0.87519 1.25600 0.98941 0.95289 0.96588 1.69764 1.37539 1.11784 1.34173 0.86569 0.84222 0.77382 0.78972 1.20586 1.21202 1.19637 1.21384 0.96016 0.95793 0.88432 1.21567 1.01082 1.00106 0.92748 1.23325 0.82542 0.75685 0.84506 1.90703 1.22664 1.62173 1.68941 1.84499 1.43802 1.60266 1.43156 1.23085 0.97402 1.00201 0.93739 1.22848 0.97420 1.01316 0.94019 1.22705 0.96209 1.02547 0.94786 1.23023 0.96061 1.01221 0.98368 0.89609 0.92563 0.90672 0.78169 0.91530 0.91781 0.92153 0.86677 0.86047 0.70951 0.89050 0.90150 0.89672 0.90302 0.89425 0.90218 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.46 71.98 0.61 -3.47 16 2 C 0.15 5.22 0.54 -11.54 -0.01 5.22 16 3 O -0.53 -20.11 9.37 -148.98 -1.40 -21.51 16 4 C 0.45 19.49 6.55 87.66 0.57 20.06 16 5 O -0.61 -28.06 15.53 -3.07 -0.05 -28.11 16 6 N -0.47 -21.08 2.13 -635.54 -1.35 -22.43 16 7 C -0.30 -14.79 7.44 84.04 0.63 -14.16 16 8 H 0.11 5.56 5.52 -2.91 -0.02 5.55 16 9 C 0.04 2.02 5.28 84.92 0.45 2.47 16 10 N -0.89 -48.72 13.96 21.66 0.30 -48.42 16 11 Si 0.90 42.81 25.12 68.60 1.72 44.53 16 12 H -0.28 -13.50 6.66 99.48 0.66 -12.83 16 13 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 14 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 15 C 0.11 4.73 3.24 86.38 0.28 5.01 16 16 C -0.12 -4.17 6.09 29.85 0.18 -3.99 16 17 C 0.50 16.51 8.33 71.24 0.59 17.11 16 18 O -0.55 -22.14 16.74 21.97 0.37 -21.77 16 19 O -0.50 -12.16 13.42 -51.38 -0.69 -12.85 16 20 C -0.13 -3.79 2.67 -10.21 -0.03 -3.82 16 21 C -0.12 -2.81 6.58 31.12 0.20 -2.60 16 22 C -0.13 -2.74 8.08 31.12 0.25 -2.49 16 23 C -0.15 -4.24 7.41 31.18 0.23 -4.01 16 24 H 0.09 2.36 7.45 -2.38 -0.02 2.34 16 25 H 0.06 2.02 6.56 -2.39 -0.02 2.00 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 27 H 0.37 13.45 6.82 -74.06 -0.50 12.95 16 28 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.06 3.04 3.81 -2.39 -0.01 3.03 16 30 H 0.06 2.80 7.51 -2.38 -0.02 2.78 16 31 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 32 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 33 H 0.43 6.05 9.10 -74.06 -0.67 5.37 16 34 H 0.09 2.95 7.64 -2.39 -0.02 2.93 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 2.12 7.77 -2.38 -0.02 2.10 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 2.27 5.91 -2.39 -0.01 2.26 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -64.44 321.20 2.74 -61.70 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.14 Total: 33.56 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 3.97 Total: 15.31 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -1.05 Total: -70.85 kcal Atomic # 8 Polarization: -82.48 SS G_CDS: -1.77 Total: -84.25 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.72 Total: 44.53 kcal Total: -64.44 2.74 -61.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593374962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.875 kcal (2) G-P(sol) polarization free energy of solvation -64.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds