Wall clock time and date at job start Tue Mar 31 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42906 * 109.46798 * 2 1 4 4 C 1.50700 * 109.47323 * 119.99604 * 2 1 3 5 5 O 1.21289 * 119.99877 * 105.51315 * 4 2 1 6 6 N 1.34776 * 120.00390 * 285.51583 * 4 2 1 7 7 C 1.37106 * 119.99904 * 5.21875 * 6 4 2 8 8 H 1.08002 * 119.99377 * 314.66717 * 7 6 4 9 9 C 1.38944 * 120.00103 * 134.66444 * 7 6 4 10 10 N 1.31410 * 120.00281 * 348.70295 * 9 7 6 11 11 Si 1.86802 * 119.99906 * 168.70693 * 9 7 6 12 12 H 1.48501 * 109.47026 * 90.00060 * 11 9 7 13 13 H 1.48500 * 109.46895 * 209.99951 * 11 9 7 14 14 H 1.48502 * 109.46999 * 329.99737 * 11 9 7 15 15 C 1.46492 * 120.00444 * 185.21534 * 6 4 2 16 16 C 1.52999 * 109.46942 * 90.00042 * 15 6 4 17 17 C 1.50704 * 109.47008 * 180.02562 * 16 15 6 18 18 O 1.20817 * 120.00495 * 359.97438 * 17 16 15 19 19 O 1.34233 * 119.99606 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47502 * 240.00134 * 2 1 3 21 21 C 1.53783 * 113.61577 * 157.49542 * 20 2 1 22 22 C 1.53781 * 87.08137 * 220.02076 * 21 20 2 23 23 C 1.53778 * 113.61575 * 59.99682 * 20 2 1 24 24 H 1.09003 * 109.46585 * 180.02562 * 1 2 3 25 25 H 1.08990 * 109.47211 * 299.99985 * 1 2 3 26 26 H 1.09000 * 109.46742 * 60.00659 * 1 2 3 27 27 H 0.96697 * 113.99872 * 173.46131 * 3 2 1 28 28 H 0.97000 * 120.00518 * 185.02913 * 10 9 7 29 29 H 1.09003 * 109.47459 * 210.00060 * 15 6 4 30 30 H 1.08998 * 109.47150 * 329.99962 * 15 6 4 31 31 H 1.09000 * 109.47287 * 299.99780 * 16 15 6 32 32 H 1.08994 * 109.47523 * 60.00413 * 16 15 6 33 33 H 0.96701 * 116.99685 * 179.97438 * 19 17 16 34 34 H 1.09000 * 112.90567 * 288.74856 * 20 2 1 35 35 H 1.09002 * 113.61307 * 334.56787 * 21 20 2 36 36 H 1.08994 * 113.61596 * 105.46775 * 21 20 2 37 37 H 1.09006 * 113.61235 * 270.88878 * 22 21 20 38 38 H 1.09001 * 113.61686 * 139.98058 * 22 21 20 39 39 H 1.09005 * 113.61488 * 254.53456 * 23 20 2 40 40 H 1.09002 * 113.61256 * 25.34826 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.4995 -1.8259 1.1385 6 7 1.9627 -0.1060 2.4332 7 6 1.3387 1.1087 2.5549 8 1 1.5361 1.8914 1.8374 9 6 0.4523 1.3326 3.6012 10 7 0.0405 0.3271 4.3402 11 14 -0.1542 3.0632 3.9573 12 1 -1.3930 3.3231 3.1808 13 1 -0.4417 3.1982 5.4079 14 1 0.8902 4.0439 3.5663 15 6 2.5537 -0.7470 3.6104 16 6 4.0100 -0.3014 3.7566 17 6 4.6181 -0.9613 4.9674 18 8 3.9548 -1.7107 5.6441 19 8 5.8969 -0.7164 5.2939 20 6 2.0401 -0.7212 -1.2492 21 6 3.4728 -0.3275 -1.6460 22 6 2.9924 -0.3571 -3.1065 23 6 1.5813 -0.0723 -2.5657 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 2.9649 1.4257 0.1006 28 1 -0.6332 0.4709 5.0230 29 1 1.9943 -0.4586 4.5004 30 1 2.5152 -1.8299 3.4922 31 1 4.5694 -0.5898 2.8667 32 1 4.0485 0.7815 3.8749 33 1 6.2426 -1.1624 6.0792 34 1 1.8773 -1.7984 -1.2134 35 1 3.7640 0.6650 -1.3022 36 1 4.2153 -1.0912 -1.4150 37 1 3.0898 -1.3348 -3.5785 38 1 3.3977 0.4506 -3.7160 39 1 0.7967 -0.6300 -3.0772 40 1 1.3539 0.9897 -2.4730 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593374964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:33 Heat of formation + Delta-G solvation = -154.290000 kcal Electronic energy + Delta-G solvation = -24283.324206 eV Core-core repulsion = 20678.103245 eV Total energy + Delta-G solvation = -3605.220961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.04390 -39.71254 -37.81009 -35.81987 -35.30066 -34.84885 -31.96429 -30.87556 -30.07355 -25.72304 -25.20696 -24.82562 -24.30164 -21.84874 -20.41085 -19.23161 -18.76111 -17.88159 -17.57819 -16.59859 -16.03532 -15.69012 -15.36690 -14.89480 -14.63225 -14.31715 -14.13007 -13.27434 -13.17734 -12.82585 -12.63263 -12.43882 -12.13485 -11.89788 -11.68134 -11.57479 -11.33433 -11.22772 -11.17602 -11.09748 -11.04616 -10.94370 -10.37180 -10.33641 -10.16301 -10.15129 -9.96688 -9.87514 -9.34581 -9.05138 -8.22981 -7.42118 -6.31374 -4.11685 2.65094 3.14024 3.23910 3.26464 3.38112 3.74370 4.15493 4.57781 4.91686 4.95435 4.99833 5.01716 5.11632 5.24883 5.57538 5.70825 5.75920 5.90223 5.94501 6.01126 6.08368 6.13661 6.14772 6.15811 6.29799 6.32917 6.42738 6.58109 6.64417 6.80278 6.86190 6.88056 7.09165 7.34486 7.63174 7.96388 8.16838 8.28895 8.48493 9.09643 9.43136 9.87238 10.71471 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.007461 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.422635 B = 3751.785149 C = 5278.618692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.151 3.849 3 O -0.536 6.536 4 C 0.451 3.549 5 O -0.598 6.598 6 N -0.429 5.429 7 C -0.343 4.343 8 H 0.117 0.883 9 C 0.042 3.958 10 N -0.867 5.867 11 Si 0.915 3.085 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.123 3.877 16 C -0.123 4.123 17 C 0.482 3.518 18 O -0.513 6.513 19 O -0.525 6.525 20 C -0.117 4.117 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.131 4.131 24 H 0.058 0.942 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.366 0.634 28 H 0.269 0.731 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.401 0.599 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.980 2.195 -6.488 9.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.108 3.892 3 O -0.341 6.341 4 C 0.239 3.761 5 O -0.483 6.483 6 N -0.147 5.147 7 C -0.470 4.470 8 H 0.134 0.866 9 C -0.164 4.164 10 N -0.504 5.504 11 Si 0.742 3.258 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.193 1.193 15 C -0.001 4.001 16 C -0.162 4.162 17 C 0.324 3.676 18 O -0.401 6.401 19 O -0.337 6.337 20 C -0.136 4.136 21 C -0.174 4.174 22 C -0.178 4.178 23 C -0.168 4.168 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.213 0.787 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.259 0.741 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.130 1.753 -6.528 8.486 hybrid contribution 0.418 0.346 1.021 1.156 sum 5.548 2.099 -5.508 8.095 Atomic orbital electron populations 1.21644 0.91645 1.01881 1.03675 1.20850 0.95897 0.81630 0.90841 1.86575 1.26500 1.25462 1.95579 1.21295 0.82057 0.86164 0.86568 1.90533 1.50951 1.19905 1.86916 1.43395 1.47499 1.19111 1.04698 1.20108 1.23094 0.90392 1.13440 0.86597 1.25614 0.95759 0.98331 0.96718 1.69814 1.28113 1.30666 1.21803 0.86112 0.79373 0.82825 0.77499 1.20261 1.21125 1.19260 1.21198 0.88324 0.97358 0.93250 1.21860 0.99311 1.02251 0.92761 1.23800 0.78761 0.78831 0.86180 1.90705 1.61817 1.35225 1.52317 1.84590 1.30018 1.69498 1.49589 1.22994 0.96049 1.00859 0.93731 1.22874 0.97062 1.01457 0.95996 1.22754 0.97467 1.01143 0.96398 1.22902 0.96177 1.01517 0.96198 0.92303 0.89179 0.92622 0.78693 0.92032 0.86819 0.91767 0.88864 0.87657 0.74140 0.88232 0.90272 0.91673 0.90736 0.91967 0.92152 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.50 37.16 0.32 -2.19 16 2 C 0.15 2.87 0.53 -91.77 -0.05 2.82 16 3 O -0.54 -9.55 9.19 -35.23 -0.32 -9.87 16 4 C 0.45 10.29 6.55 -10.99 -0.07 10.22 16 5 O -0.60 -14.97 15.39 5.55 0.09 -14.89 16 6 N -0.43 -10.11 2.47 -114.82 -0.28 -10.39 16 7 C -0.34 -8.11 6.73 -14.93 -0.10 -8.21 16 8 H 0.12 2.66 5.44 -52.49 -0.29 2.38 16 9 C 0.04 1.02 5.14 -17.47 -0.09 0.93 16 10 N -0.87 -22.82 11.42 55.50 0.63 -22.18 16 11 Si 0.92 19.32 29.57 -169.99 -5.03 14.30 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 15 C 0.12 2.89 4.32 -4.05 -0.02 2.87 16 16 C -0.12 -2.34 6.14 -27.88 -0.17 -2.52 16 17 C 0.48 8.75 8.33 36.01 0.30 9.05 16 18 O -0.51 -10.96 16.74 -18.74 -0.31 -11.28 16 19 O -0.53 -7.38 13.42 -39.27 -0.53 -7.91 16 20 C -0.12 -1.94 2.62 -89.81 -0.24 -2.17 16 21 C -0.14 -1.97 7.41 -25.92 -0.19 -2.16 16 22 C -0.14 -1.74 8.08 -25.92 -0.21 -1.95 16 23 C -0.13 -1.79 6.58 -25.92 -0.17 -1.96 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.09 1.95 6.52 -51.93 -0.34 1.62 16 26 H 0.05 0.92 7.45 -51.93 -0.39 0.53 16 27 H 0.37 5.71 7.12 45.56 0.32 6.03 16 28 H 0.27 6.80 8.32 -40.82 -0.34 6.47 16 29 H 0.11 2.95 5.69 -51.93 -0.30 2.66 16 30 H 0.06 1.64 7.31 -51.93 -0.38 1.26 16 31 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 32 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 33 H 0.40 3.72 9.10 45.56 0.41 4.14 16 34 H 0.10 1.81 7.67 -51.93 -0.40 1.41 16 35 H 0.08 1.07 6.05 -51.93 -0.31 0.75 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.22 7.77 -51.93 -0.40 0.82 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -30.07 325.87 -5.69 -35.77 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -4.16 Total: 16.82 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.69 Total: 4.72 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.35 Total: -32.57 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -1.08 Total: -43.94 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.07 -5.69 -35.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593374964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.524 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds