Wall clock time and date at job start Tue Mar 31 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42906 * 109.46798 * 2 1 4 4 C 1.50700 * 109.47323 * 119.99604 * 2 1 3 5 5 O 1.21289 * 119.99877 * 105.51315 * 4 2 1 6 6 N 1.34776 * 120.00390 * 285.51583 * 4 2 1 7 7 C 1.37106 * 119.99904 * 5.21875 * 6 4 2 8 8 H 1.08002 * 119.99377 * 314.66717 * 7 6 4 9 9 C 1.38944 * 120.00103 * 134.66444 * 7 6 4 10 10 N 1.31410 * 120.00281 * 348.70295 * 9 7 6 11 11 Si 1.86802 * 119.99906 * 168.70693 * 9 7 6 12 12 H 1.48501 * 109.47026 * 90.00060 * 11 9 7 13 13 H 1.48500 * 109.46895 * 209.99951 * 11 9 7 14 14 H 1.48502 * 109.46999 * 329.99737 * 11 9 7 15 15 C 1.46492 * 120.00444 * 185.21534 * 6 4 2 16 16 C 1.52999 * 109.46942 * 90.00042 * 15 6 4 17 17 C 1.50704 * 109.47008 * 180.02562 * 16 15 6 18 18 O 1.20817 * 120.00495 * 359.97438 * 17 16 15 19 19 O 1.34233 * 119.99606 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47502 * 240.00134 * 2 1 3 21 21 C 1.53783 * 113.61577 * 157.49542 * 20 2 1 22 22 C 1.53781 * 87.08137 * 220.02076 * 21 20 2 23 23 C 1.53778 * 113.61575 * 59.99682 * 20 2 1 24 24 H 1.09003 * 109.46585 * 180.02562 * 1 2 3 25 25 H 1.08990 * 109.47211 * 299.99985 * 1 2 3 26 26 H 1.09000 * 109.46742 * 60.00659 * 1 2 3 27 27 H 0.96697 * 113.99872 * 173.46131 * 3 2 1 28 28 H 0.97000 * 120.00518 * 185.02913 * 10 9 7 29 29 H 1.09003 * 109.47459 * 210.00060 * 15 6 4 30 30 H 1.08998 * 109.47150 * 329.99962 * 15 6 4 31 31 H 1.09000 * 109.47287 * 299.99780 * 16 15 6 32 32 H 1.08994 * 109.47523 * 60.00413 * 16 15 6 33 33 H 0.96701 * 116.99685 * 179.97438 * 19 17 16 34 34 H 1.09000 * 112.90567 * 288.74856 * 20 2 1 35 35 H 1.09002 * 113.61307 * 334.56787 * 21 20 2 36 36 H 1.08994 * 113.61596 * 105.46775 * 21 20 2 37 37 H 1.09006 * 113.61235 * 270.88878 * 22 21 20 38 38 H 1.09001 * 113.61686 * 139.98058 * 22 21 20 39 39 H 1.09005 * 113.61488 * 254.53456 * 23 20 2 40 40 H 1.09002 * 113.61256 * 25.34826 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.4995 -1.8259 1.1385 6 7 1.9627 -0.1060 2.4332 7 6 1.3387 1.1087 2.5549 8 1 1.5361 1.8914 1.8374 9 6 0.4523 1.3326 3.6012 10 7 0.0405 0.3271 4.3402 11 14 -0.1542 3.0632 3.9573 12 1 -1.3930 3.3231 3.1808 13 1 -0.4417 3.1982 5.4079 14 1 0.8902 4.0439 3.5663 15 6 2.5537 -0.7470 3.6104 16 6 4.0100 -0.3014 3.7566 17 6 4.6181 -0.9613 4.9674 18 8 3.9548 -1.7107 5.6441 19 8 5.8969 -0.7164 5.2939 20 6 2.0401 -0.7212 -1.2492 21 6 3.4728 -0.3275 -1.6460 22 6 2.9924 -0.3571 -3.1065 23 6 1.5813 -0.0723 -2.5657 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 2.9649 1.4257 0.1006 28 1 -0.6332 0.4709 5.0230 29 1 1.9943 -0.4586 4.5004 30 1 2.5152 -1.8299 3.4922 31 1 4.5694 -0.5898 2.8667 32 1 4.0485 0.7815 3.8749 33 1 6.2426 -1.1624 6.0792 34 1 1.8773 -1.7984 -1.2134 35 1 3.7640 0.6650 -1.3022 36 1 4.2153 -1.0912 -1.4150 37 1 3.0898 -1.3348 -3.5785 38 1 3.3977 0.4506 -3.7160 39 1 0.7967 -0.6300 -3.0772 40 1 1.3539 0.9897 -2.4730 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593374964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:32 Heat of formation + Delta-G solvation = -175.285400 kcal Electronic energy + Delta-G solvation = -24284.234635 eV Core-core repulsion = 20678.103245 eV Total energy + Delta-G solvation = -3606.131390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58946 -41.15465 -39.32799 -37.21961 -36.90559 -36.49012 -33.78900 -32.52133 -31.67026 -27.10688 -26.91068 -26.11702 -25.90302 -23.31407 -21.89497 -20.96484 -20.04058 -19.48713 -19.05050 -18.13412 -17.56278 -17.19934 -16.88028 -16.51008 -16.20878 -15.93755 -15.72059 -14.90143 -14.68079 -14.32830 -14.10147 -13.92866 -13.55744 -13.34828 -13.24942 -13.05472 -12.94993 -12.81265 -12.73146 -12.63984 -12.57471 -12.32652 -12.06851 -11.96476 -11.69946 -11.57227 -11.31313 -11.12952 -10.91036 -10.73977 -9.98104 -9.30605 -8.19009 -6.03968 1.18197 1.45740 1.51730 1.61911 1.87363 2.06093 2.42030 2.97031 3.14131 3.47558 3.76122 3.82452 3.94643 3.99462 4.05662 4.13207 4.33672 4.43502 4.52383 4.63501 4.75033 4.86342 4.88974 4.96528 4.98253 5.03816 5.09471 5.15337 5.18570 5.38740 5.44308 5.49240 5.58160 5.70672 5.73455 6.12833 6.56713 6.80478 6.99187 7.22223 7.59660 8.02522 8.84360 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.007461 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.422635 B = 3751.785149 C = 5278.618692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.161 3.839 3 O -0.534 6.534 4 C 0.441 3.559 5 O -0.627 6.627 6 N -0.438 5.438 7 C -0.336 4.336 8 H 0.129 0.871 9 C -0.004 4.004 10 N -0.908 5.908 11 Si 0.977 3.023 12 H -0.276 1.276 13 H -0.293 1.293 14 H -0.253 1.253 15 C 0.127 3.873 16 C -0.113 4.113 17 C 0.493 3.507 18 O -0.552 6.552 19 O -0.506 6.506 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.126 4.126 23 C -0.121 4.121 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.377 0.623 28 H 0.266 0.734 29 H 0.087 0.913 30 H 0.030 0.970 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.426 0.574 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.148 4.201 -8.192 11.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.117 3.883 3 O -0.341 6.341 4 C 0.230 3.770 5 O -0.514 6.514 6 N -0.156 5.156 7 C -0.463 4.463 8 H 0.146 0.854 9 C -0.205 4.205 10 N -0.546 5.546 11 Si 0.802 3.198 12 H -0.202 1.202 13 H -0.220 1.220 14 H -0.176 1.176 15 C 0.003 3.997 16 C -0.152 4.152 17 C 0.337 3.663 18 O -0.443 6.443 19 O -0.320 6.320 20 C -0.146 4.146 21 C -0.175 4.175 22 C -0.163 4.163 23 C -0.158 4.158 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.226 0.774 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.049 0.951 31 H 0.122 0.878 32 H 0.139 0.861 33 H 0.288 0.712 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.350 3.780 -8.238 11.067 hybrid contribution 0.123 -0.344 1.578 1.620 sum 6.473 3.436 -6.660 9.903 Atomic orbital electron populations 1.21596 0.91888 1.01441 1.03597 1.20741 0.95628 0.82000 0.89933 1.86533 1.27672 1.24458 1.95420 1.22119 0.81319 0.86045 0.87482 1.90505 1.52112 1.21316 1.87468 1.43614 1.47796 1.19277 1.04940 1.20378 1.22356 0.90369 1.13224 0.85446 1.26385 0.96058 1.01461 0.96607 1.69970 1.29132 1.32769 1.22743 0.85156 0.79103 0.78955 0.76620 1.20158 1.21962 1.17611 1.20935 0.90995 0.95369 0.92430 1.21601 0.96557 1.03051 0.93942 1.23449 0.79643 0.77850 0.85374 1.90707 1.63132 1.36951 1.53492 1.84503 1.27457 1.69158 1.50875 1.22982 0.98316 0.99497 0.93837 1.22930 0.95319 1.01600 0.97660 1.22703 0.95974 1.02401 0.95222 1.22870 0.97469 1.01402 0.94086 0.93009 0.92047 0.89714 0.77387 0.92476 0.89461 0.95133 0.87846 0.86132 0.71210 0.90502 0.89122 0.92796 0.90000 0.89799 0.91090 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.50 71.98 0.61 -4.20 16 2 C 0.16 5.98 0.53 -11.54 -0.01 5.97 16 3 O -0.53 -17.92 9.19 -148.98 -1.37 -19.29 16 4 C 0.44 20.40 6.55 87.66 0.57 20.98 16 5 O -0.63 -32.32 15.39 -3.06 -0.05 -32.36 16 6 N -0.44 -21.01 2.47 -635.56 -1.57 -22.58 16 7 C -0.34 -15.85 6.73 84.04 0.57 -15.29 16 8 H 0.13 5.67 5.44 -2.91 -0.02 5.65 16 9 C 0.00 -0.18 5.14 84.93 0.44 0.26 16 10 N -0.91 -49.30 11.42 21.66 0.25 -49.06 16 11 Si 0.98 39.36 29.57 68.60 2.03 41.39 16 12 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 13 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 14 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 15 C 0.13 6.19 4.32 86.38 0.37 6.56 16 16 C -0.11 -4.28 6.14 29.85 0.18 -4.10 16 17 C 0.49 17.64 8.33 71.24 0.59 18.23 16 18 O -0.55 -23.98 16.74 21.99 0.37 -23.62 16 19 O -0.51 -13.06 13.42 -51.44 -0.69 -13.75 16 20 C -0.13 -4.04 2.62 -10.27 -0.03 -4.07 16 21 C -0.14 -3.69 7.41 31.12 0.23 -3.46 16 22 C -0.13 -2.71 8.08 31.12 0.25 -2.46 16 23 C -0.12 -2.96 6.58 31.12 0.20 -2.76 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 25 H 0.06 2.66 6.52 -2.39 -0.02 2.65 16 26 H 0.08 2.65 7.45 -2.39 -0.02 2.63 16 27 H 0.38 10.85 7.12 -74.06 -0.53 10.32 16 28 H 0.27 13.92 8.32 -92.71 -0.77 13.15 16 29 H 0.09 4.74 5.69 -2.39 -0.01 4.73 16 30 H 0.03 1.64 7.31 -2.39 -0.02 1.63 16 31 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 32 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 33 H 0.43 6.77 9.10 -74.06 -0.67 6.10 16 34 H 0.08 2.80 7.67 -2.39 -0.02 2.78 16 35 H 0.09 2.20 6.05 -2.39 -0.01 2.18 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.09 2.20 7.77 -2.39 -0.02 2.18 16 Total: -1.00 -66.84 325.87 2.84 -64.00 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -0.12 Total: 39.59 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 3.99 Total: 15.67 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -1.32 Total: -71.64 kcal Atomic # 8 Polarization: -87.28 SS G_CDS: -1.74 Total: -89.01 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -66.84 2.84 -64.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593374964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.281 kcal (2) G-P(sol) polarization free energy of solvation -66.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds