Wall clock time and date at job start Tue Mar 31 2020 05:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.98688 * 2 1 4 4 C 1.54093 * 109.87843 * 121.08425 * 2 1 3 5 5 C 1.54814 * 104.18952 * 117.39917 * 4 2 1 6 6 C 1.54995 * 102.08659 * 339.11838 * 5 4 2 7 7 H 1.09003 * 110.61903 * 278.36170 * 6 5 4 8 8 C 1.50704 * 110.61781 * 155.52765 * 6 5 4 9 9 O 1.21297 * 119.99768 * 245.00135 * 8 6 5 10 10 N 1.34776 * 120.00328 * 64.99273 * 8 6 5 11 11 C 1.37100 * 119.99587 * 0.02562 * 10 8 6 12 12 H 1.07998 * 120.00371 * 34.03092 * 11 10 8 13 13 C 1.38958 * 119.99744 * 213.75452 * 11 10 8 14 14 N 1.31408 * 119.99897 * 22.59396 * 13 11 10 15 15 Si 1.86803 * 119.99736 * 202.59541 * 13 11 10 16 16 H 1.48498 * 109.47161 * 89.99937 * 15 13 11 17 17 H 1.48503 * 109.46672 * 209.99931 * 15 13 11 18 18 H 1.48501 * 109.47173 * 329.99618 * 15 13 11 19 19 C 1.46492 * 120.00315 * 180.02562 * 10 8 6 20 20 C 1.53003 * 109.47206 * 274.08041 * 19 10 8 21 21 C 1.50697 * 109.47079 * 179.97438 * 20 19 10 22 22 O 1.20826 * 120.00408 * 0.02562 * 21 20 19 23 23 O 1.34236 * 120.00109 * 179.97438 * 21 20 19 24 24 O 1.43746 * 109.88145 * 238.91901 * 2 1 3 25 25 H 1.09001 * 109.47374 * 298.91155 * 1 2 3 26 26 H 1.08996 * 109.47058 * 58.91881 * 1 2 3 27 27 H 1.09007 * 109.46697 * 178.91412 * 1 2 3 28 28 H 1.09004 * 109.46851 * 181.08460 * 3 2 1 29 29 H 1.09004 * 109.47378 * 301.08658 * 3 2 1 30 30 H 1.09003 * 109.47048 * 61.08390 * 3 2 1 31 31 H 1.08994 * 110.49184 * 358.72227 * 4 2 1 32 32 H 1.09006 * 110.59862 * 236.12817 * 4 2 1 33 33 H 1.08993 * 110.90784 * 220.92142 * 5 4 2 34 34 H 1.08999 * 110.90823 * 97.30886 * 5 4 2 35 35 H 0.97001 * 119.99518 * 179.97438 * 14 13 11 36 36 H 1.09001 * 109.47239 * 34.08276 * 19 10 8 37 37 H 1.09004 * 109.47280 * 154.08256 * 19 10 8 38 38 H 1.08994 * 109.47291 * 299.99862 * 20 19 10 39 39 H 1.09002 * 109.46821 * 60.00474 * 20 19 10 40 40 H 0.96698 * 117.00210 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4379 0.0000 4 6 2.0540 -0.7482 1.2410 5 6 2.8326 -1.9524 0.6576 6 6 2.2282 -2.0712 -0.7647 7 1 1.2828 -2.6132 -0.7360 8 6 3.1980 -2.7485 -1.6986 9 8 3.6669 -2.1359 -2.6345 10 7 3.5443 -4.0348 -1.4936 11 6 3.0140 -4.7272 -0.4359 12 1 2.0034 -4.5273 -0.1117 13 6 3.7748 -5.6905 0.2154 14 7 5.0864 -5.6489 0.1467 15 14 2.9329 -7.0446 1.1887 16 1 2.6752 -8.2060 0.2999 17 1 3.8092 -7.4652 2.3114 18 1 1.6452 -6.5390 1.7284 19 6 4.4874 -4.6929 -2.4010 20 6 3.7278 -5.2627 -3.6007 21 6 4.6981 -5.9392 -4.5344 22 8 5.8762 -5.9636 -4.2676 23 8 4.2534 -6.5156 -5.6622 24 8 2.0189 -0.6979 -1.1577 25 1 -0.3634 0.4968 0.8996 26 1 -0.3633 0.5305 -0.8801 27 1 -0.3633 -1.0276 -0.0195 28 1 3.1428 1.4281 -0.0195 29 1 1.6785 1.9607 -0.8801 30 1 1.7102 1.9492 0.8996 31 1 1.2238 -1.0931 1.8573 32 1 2.7192 -0.1090 1.8217 33 1 2.6434 -2.8557 1.2373 34 1 3.9004 -1.7389 0.6098 35 1 5.6174 -6.3211 0.6017 36 1 5.2237 -3.9680 -2.7481 37 1 4.9941 -5.5017 -1.8744 38 1 2.9916 -5.9876 -3.2536 39 1 3.2212 -4.4539 -4.1274 40 1 4.9132 -6.9375 -6.2294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593871579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:49 Heat of formation + Delta-G solvation = -196.728938 kcal Electronic energy + Delta-G solvation = -23814.389005 eV Core-core repulsion = 20207.327754 eV Total energy + Delta-G solvation = -3607.061252 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47996 -41.11468 -39.69460 -37.24509 -36.81608 -34.05337 -33.78290 -33.21454 -31.90974 -28.27732 -27.79571 -27.10520 -25.20221 -23.06690 -22.03568 -21.04411 -20.88196 -19.35562 -18.74268 -18.12462 -17.61376 -17.14464 -16.82911 -16.40230 -16.21548 -16.00398 -15.43054 -15.03928 -14.69930 -14.38941 -14.33808 -14.21181 -14.02965 -13.47510 -13.16368 -13.08975 -12.96946 -12.84968 -12.67054 -12.58182 -12.55383 -12.51438 -12.25493 -12.03522 -11.94796 -11.68354 -11.55186 -11.46794 -11.02248 -10.67772 -10.22703 -9.59675 -8.29959 -6.05418 1.16371 1.44388 1.53150 1.63073 1.86051 1.99959 2.35227 2.58058 3.05331 3.35982 3.73919 3.92003 3.96275 3.97746 4.09424 4.18140 4.26736 4.31968 4.44543 4.55873 4.66098 4.72601 4.79749 4.81989 4.93729 4.96034 5.00030 5.04241 5.22757 5.25016 5.32572 5.33588 5.46378 5.49086 5.57265 5.89655 6.12168 6.39905 6.98035 7.10715 7.51193 7.94467 8.72269 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.006144 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.460463 B = 4556.491201 C = 5916.996666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.077 3.923 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.122 4.122 6 C 0.087 3.913 7 H 0.096 0.904 8 C 0.459 3.541 9 O -0.628 6.628 10 N -0.439 5.439 11 C -0.354 4.354 12 H 0.110 0.890 13 C 0.007 3.993 14 N -0.887 5.887 15 Si 0.979 3.021 16 H -0.275 1.275 17 H -0.289 1.289 18 H -0.248 1.248 19 C 0.130 3.870 20 C -0.118 4.118 21 C 0.495 3.505 22 O -0.549 6.549 23 O -0.506 6.506 24 O -0.380 6.380 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.041 0.959 35 H 0.272 0.728 36 H 0.029 0.971 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.392 2.547 2.028 9.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 C -0.195 4.195 4 C -0.174 4.174 5 C -0.160 4.160 6 C 0.027 3.973 7 H 0.113 0.887 8 C 0.249 3.751 9 O -0.515 6.515 10 N -0.158 5.158 11 C -0.480 4.480 12 H 0.128 0.872 13 C -0.197 4.197 14 N -0.523 5.523 15 Si 0.802 3.198 16 H -0.201 1.201 17 H -0.215 1.215 18 H -0.172 1.172 19 C 0.006 3.994 20 C -0.156 4.156 21 C 0.339 3.661 22 O -0.440 6.440 23 O -0.320 6.320 24 O -0.299 6.299 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.121 0.879 38 H 0.139 0.861 39 H 0.116 0.884 40 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -8.933 3.013 1.758 9.590 hybrid contribution 0.834 -1.115 -0.122 1.397 sum -8.099 1.898 1.637 8.478 Atomic orbital electron populations 1.22217 0.93051 1.02619 1.03354 1.22528 0.95098 0.93644 0.84957 1.21901 1.00780 0.93492 1.03371 1.23089 1.00928 0.96055 0.97340 1.22805 0.98884 1.00257 0.94030 1.22549 0.97196 0.83930 0.93614 0.88688 1.20891 0.85436 0.81960 0.86813 1.90515 1.59790 1.65555 1.35617 1.43560 1.39994 1.07746 1.24466 1.19799 0.98781 1.19696 1.09769 0.87237 1.26178 0.94996 1.01038 0.97478 1.70056 1.06093 1.34293 1.41892 0.85142 0.78917 0.78287 0.77444 1.20085 1.21546 1.17154 1.21005 0.91078 0.98160 0.89151 1.21619 0.98143 1.01313 0.94559 1.23339 0.87973 0.74565 0.80243 1.90703 1.20376 1.57978 1.74931 1.84503 1.46604 1.67702 1.33183 1.88965 1.86358 1.19991 1.34621 0.88843 0.92402 0.92536 0.93658 0.92378 0.88288 0.87982 0.89360 0.88381 0.93966 0.91815 0.95246 0.87917 0.86068 0.88364 0.71130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 8.61 71.98 0.62 -2.90 16 2 C 0.08 2.22 1.19 -10.42 -0.01 2.21 16 3 C -0.14 -3.46 8.68 71.98 0.62 -2.84 16 4 C -0.14 -3.67 6.27 31.58 0.20 -3.47 16 5 C -0.12 -4.47 5.80 31.90 0.18 -4.28 16 6 C 0.09 3.61 2.81 30.53 0.09 3.69 16 7 H 0.10 3.57 7.56 -2.39 -0.02 3.55 16 8 C 0.46 23.20 7.07 87.66 0.62 23.82 16 9 O -0.63 -36.14 16.21 15.15 0.25 -35.90 16 10 N -0.44 -21.70 2.55 -635.53 -1.62 -23.33 16 11 C -0.35 -16.37 7.21 84.04 0.61 -15.77 16 12 H 0.11 4.63 6.69 -2.91 -0.02 4.61 16 13 C 0.01 0.33 4.93 84.93 0.42 0.75 16 14 N -0.89 -45.87 11.33 21.67 0.25 -45.62 16 15 Si 0.98 36.39 29.61 68.60 2.03 38.42 16 16 H -0.28 -10.19 7.11 99.48 0.71 -9.48 16 17 H -0.29 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.25 -8.42 7.11 99.48 0.71 -7.71 16 19 C 0.13 6.46 4.22 86.38 0.36 6.83 16 20 C -0.12 -4.71 6.11 29.85 0.18 -4.53 16 21 C 0.50 18.31 8.33 71.23 0.59 18.90 16 22 O -0.55 -24.10 16.74 21.96 0.37 -23.73 16 23 O -0.51 -13.69 13.42 -51.48 -0.69 -14.38 16 24 O -0.38 -15.59 10.13 -130.75 -1.33 -16.92 16 25 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.31 8.12 -2.38 -0.02 1.29 16 28 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.10 2.17 7.70 -2.39 -0.02 2.15 16 32 H 0.09 2.11 7.70 -2.38 -0.02 2.09 16 33 H 0.10 3.54 6.96 -2.39 -0.02 3.52 16 34 H 0.04 1.79 8.05 -2.39 -0.02 1.77 16 35 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 36 H 0.03 1.62 7.51 -2.39 -0.02 1.60 16 37 H 0.10 5.48 5.29 -2.38 -0.01 5.47 16 38 H 0.12 4.41 8.14 -2.39 -0.02 4.39 16 39 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 40 H 0.43 7.14 9.10 -74.06 -0.67 6.46 16 Total: -1.00 -69.97 332.52 4.12 -65.85 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.38 Total: 33.19 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 4.48 Total: 22.41 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: -1.38 Total: -68.95 kcal Atomic # 8 Polarization: -89.52 SS G_CDS: -1.40 Total: -90.92 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -69.97 4.12 -65.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593871579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.875 kcal (2) G-P(sol) polarization free energy of solvation -69.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds