Wall clock time and date at job start Tue Mar 31 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.82064 * 2 1 4 4 C 1.54379 * 109.83258 * 120.88606 * 2 1 3 5 5 C 1.55307 * 102.24916 * 98.15841 * 4 2 1 6 6 C 1.54946 * 100.94568 * 34.13325 * 5 4 2 7 7 H 1.09001 * 110.31043 * 82.56504 * 6 5 4 8 8 C 1.50699 * 110.31275 * 204.63708 * 6 5 4 9 9 O 1.21296 * 119.99590 * 113.53546 * 8 6 5 10 10 N 1.34775 * 120.00231 * 293.53519 * 8 6 5 11 11 C 1.37094 * 119.99954 * 354.93804 * 10 8 6 12 12 H 1.08000 * 119.99990 * 322.84819 * 11 10 8 13 13 C 1.38956 * 120.00127 * 142.84051 * 11 10 8 14 14 N 1.31401 * 119.99944 * 158.73472 * 13 11 10 15 15 Si 1.86800 * 119.99961 * 338.73946 * 13 11 10 16 16 H 1.48496 * 109.47220 * 95.27209 * 15 13 11 17 17 H 1.48497 * 109.47124 * 215.27464 * 15 13 11 18 18 H 1.48502 * 109.47202 * 335.27657 * 15 13 11 19 19 C 1.46499 * 119.99711 * 174.93495 * 10 8 6 20 20 C 1.52996 * 109.47159 * 90.00456 * 19 10 8 21 21 C 1.50701 * 109.47379 * 179.97438 * 20 19 10 22 22 O 1.20819 * 119.99917 * 0.02562 * 21 20 19 23 23 O 1.34226 * 119.99957 * 179.97438 * 21 20 19 24 24 O 1.43244 * 109.82857 * 239.02644 * 2 1 3 25 25 H 1.09000 * 109.47486 * 299.10658 * 1 2 3 26 26 H 1.08998 * 109.47502 * 59.11213 * 1 2 3 27 27 H 1.09006 * 109.46753 * 179.11159 * 1 2 3 28 28 H 1.09000 * 109.47038 * 180.89065 * 3 2 1 29 29 H 1.09009 * 109.47431 * 300.88760 * 3 2 1 30 30 H 1.08996 * 109.47415 * 60.88628 * 3 2 1 31 31 H 1.08997 * 110.84797 * 339.97345 * 4 2 1 32 32 H 1.08996 * 111.02122 * 216.42272 * 4 2 1 33 33 H 1.09004 * 111.12977 * 276.21216 * 5 4 2 34 34 H 1.09004 * 111.16103 * 152.06575 * 5 4 2 35 35 H 0.97005 * 120.00088 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47640 * 330.00337 * 19 10 8 37 37 H 1.09003 * 109.46903 * 209.99855 * 19 10 8 38 38 H 1.09007 * 109.47179 * 300.00089 * 20 19 10 39 39 H 1.09009 * 109.47265 * 59.99120 * 20 19 10 40 40 H 0.96700 * 116.99837 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4393 0.0000 4 6 2.0538 -0.7455 1.2463 5 6 2.3682 -2.1564 0.6784 6 6 2.8407 -1.7987 -0.7532 7 1 3.8904 -1.5051 -0.7429 8 6 2.6351 -2.9692 -1.6798 9 8 1.8271 -2.8943 -2.5814 10 7 3.3488 -4.0993 -1.5067 11 6 4.3343 -4.1486 -0.5549 12 1 4.9526 -3.2821 -0.3724 13 6 4.5374 -5.3133 0.1752 14 7 5.6925 -5.5264 0.7642 15 14 3.1685 -6.5761 0.3192 16 1 3.3496 -7.6230 -0.7182 17 1 3.2110 -7.2009 1.6657 18 1 1.8565 -5.9083 0.1245 19 6 3.0715 -5.2749 -2.3356 20 6 3.9369 -5.2257 -3.5964 21 6 3.6521 -6.4354 -4.4488 22 8 2.8399 -7.2527 -4.0855 23 8 4.3000 -6.6042 -5.6121 24 8 2.0159 -0.6935 -1.1554 25 1 -0.3634 0.4999 0.8979 26 1 -0.3634 0.5275 -0.8819 27 1 -0.3633 -1.0276 -0.0159 28 1 3.1386 1.4327 -0.0160 29 1 1.6757 1.9601 -0.8820 30 1 1.7016 1.9507 0.8978 31 1 1.2851 -0.8001 2.0172 32 1 2.9565 -0.2733 1.6336 33 1 1.4731 -2.7780 0.6528 34 1 3.1636 -2.6404 1.2451 35 1 5.8345 -6.3397 1.2736 36 1 2.0186 -5.2806 -2.6177 37 1 3.3016 -6.1792 -1.7722 38 1 3.7069 -4.3213 -4.1599 39 1 4.9898 -5.2200 -3.3143 40 1 4.0840 -7.3956 -6.1241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593871580.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:53 Heat of formation + Delta-G solvation = -169.858040 kcal Electronic energy + Delta-G solvation = -23923.590356 eV Core-core repulsion = 20317.694314 eV Total energy + Delta-G solvation = -3605.896042 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09520 -39.75898 -38.22971 -35.94989 -35.12032 -32.85909 -32.33338 -31.74643 -30.53858 -27.16775 -26.52617 -25.12900 -24.01648 -21.76365 -20.81831 -19.76598 -19.11521 -17.94066 -17.15688 -16.71155 -16.31247 -15.90923 -15.47127 -14.96445 -14.76289 -14.34130 -14.09419 -13.55983 -13.22414 -13.19285 -12.96489 -12.78501 -12.66377 -12.19944 -12.00596 -11.93540 -11.81403 -11.47250 -11.38118 -11.29270 -11.23812 -10.95694 -10.86144 -10.40855 -10.35636 -10.30126 -10.18453 -9.93123 -9.37778 -9.16335 -8.47306 -7.98701 -6.60937 -4.22600 2.51258 3.03444 3.18022 3.22091 3.26056 3.61441 3.84371 4.04789 4.60346 4.76528 4.93740 5.04750 5.17947 5.33607 5.39170 5.50933 5.57922 5.63234 5.74480 5.77107 5.85871 5.92184 5.99622 6.05827 6.06829 6.11613 6.12634 6.28781 6.33802 6.46887 6.51072 6.59260 6.61366 6.73162 7.17800 7.52369 7.91689 8.09970 8.15953 8.83033 9.20939 9.53865 10.48468 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017075 B = 0.006050 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.387558 B = 4626.609549 C = 5587.840012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.097 3.903 3 C -0.151 4.151 4 C -0.147 4.147 5 C -0.131 4.131 6 C 0.087 3.913 7 H 0.090 0.910 8 C 0.484 3.516 9 O -0.576 6.576 10 N -0.463 5.463 11 C -0.351 4.351 12 H 0.108 0.892 13 C 0.073 3.927 14 N -0.853 5.853 15 Si 0.866 3.134 16 H -0.268 1.268 17 H -0.286 1.286 18 H -0.260 1.260 19 C 0.117 3.883 20 C -0.124 4.124 21 C 0.485 3.515 22 O -0.521 6.521 23 O -0.520 6.520 24 O -0.352 6.352 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.277 0.723 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 5.481 -0.917 6.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.057 3.943 3 C -0.208 4.208 4 C -0.185 4.185 5 C -0.169 4.169 6 C 0.027 3.973 7 H 0.107 0.893 8 C 0.273 3.727 9 O -0.459 6.459 10 N -0.185 5.185 11 C -0.478 4.478 12 H 0.125 0.875 13 C -0.136 4.136 14 N -0.487 5.487 15 Si 0.693 3.307 16 H -0.195 1.195 17 H -0.213 1.213 18 H -0.184 1.184 19 C -0.006 4.006 20 C -0.162 4.162 21 C 0.327 3.673 22 O -0.409 6.409 23 O -0.331 6.331 24 O -0.271 6.271 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -3.639 5.599 -1.110 6.769 hybrid contribution -0.492 -1.484 0.066 1.565 sum -4.131 4.115 -1.044 5.924 Atomic orbital electron populations 1.22044 0.94529 1.02569 1.01545 1.22062 0.94008 0.92300 0.85914 1.22078 1.01563 0.95378 1.01803 1.23230 1.01641 0.96217 0.97383 1.23057 1.02926 0.96212 0.94714 1.22479 0.95375 0.86040 0.93409 0.89284 1.20312 0.81172 0.84961 0.86262 1.90576 1.37457 1.83068 1.34800 1.43644 1.32645 1.10160 1.32055 1.19064 1.10773 1.02610 1.15313 0.87488 1.25302 0.95704 0.97503 0.95079 1.69743 1.20890 1.26658 1.31431 0.87096 0.84142 0.82019 0.77412 1.19523 1.21311 1.18387 1.21395 0.99051 0.90145 0.90046 1.21768 1.04927 0.93959 0.95580 1.23734 0.76947 0.87437 0.79157 1.90693 1.33571 1.45052 1.71614 1.84584 1.65222 1.49222 1.34065 1.88497 1.67453 1.42197 1.28978 0.92101 0.92190 0.92107 0.92178 0.92195 0.91913 0.90398 0.90437 0.90962 0.87741 0.91277 0.90339 0.90677 0.87363 0.86614 0.73895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.73 37.16 0.32 -1.74 16 2 C 0.10 1.47 1.27 -89.90 -0.11 1.35 16 3 C -0.15 -1.88 8.75 37.16 0.33 -1.56 16 4 C -0.15 -2.07 6.08 -24.79 -0.15 -2.23 16 5 C -0.13 -2.32 5.92 -24.48 -0.14 -2.47 16 6 C 0.09 1.74 3.05 -26.86 -0.08 1.66 16 7 H 0.09 1.73 7.36 -51.93 -0.38 1.34 16 8 C 0.48 11.20 7.03 -10.99 -0.08 11.13 16 9 O -0.58 -14.77 16.18 -13.80 -0.22 -15.00 16 10 N -0.46 -10.64 2.19 -114.81 -0.25 -10.89 16 11 C -0.35 -8.37 7.76 -14.93 -0.12 -8.49 16 12 H 0.11 2.63 7.13 -52.49 -0.37 2.26 16 13 C 0.07 1.80 5.33 -17.47 -0.09 1.70 16 14 N -0.85 -22.02 13.96 55.50 0.77 -21.25 16 15 Si 0.87 20.01 24.95 -169.99 -4.24 15.77 16 16 H -0.27 -6.30 6.68 56.52 0.38 -5.92 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 19 C 0.12 2.60 3.46 -4.04 -0.01 2.58 16 20 C -0.12 -2.33 6.13 -27.88 -0.17 -2.50 16 21 C 0.48 8.57 8.33 36.01 0.30 8.87 16 22 O -0.52 -10.67 16.74 -18.74 -0.31 -10.98 16 23 O -0.52 -7.16 13.42 -39.25 -0.53 -7.69 16 24 O -0.35 -6.94 9.93 -54.57 -0.54 -7.48 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.95 7.82 -51.93 -0.41 0.54 16 32 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 33 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 34 H 0.10 1.91 7.35 -51.93 -0.38 1.52 16 35 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.08 1.81 7.46 -51.93 -0.39 1.42 16 37 H 0.08 1.75 3.08 -51.93 -0.16 1.59 16 38 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 39 H 0.12 2.13 8.14 -51.92 -0.42 1.70 16 40 H 0.40 3.58 9.10 45.56 0.41 3.99 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -30.69 328.75 -5.43 -36.12 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.04 Total: 8.12 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.01 Total: 8.32 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.52 Total: -32.14 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -1.61 Total: -41.15 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.24 Total: 15.77 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.69 -5.43 -36.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593871580.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.739 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds